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PI0024657 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0024657
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase
Genome locationchr03:19069978..19070454
RNA-Seq ExpressionPI0024657
SyntenyPI0024657
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031722.1 uncharacterized protein E6C27_scaffold139G005100 [Cucumis melo var. makuwa]2.4e-5469.57Show/hide
Query:  MEFPDTVRFLEGRIEEISEKADAIDAVTGCLNGLLIKELLTRVDTLEAKAT---RINYERGDSSTGSVAHVEEQICELDSSKKSIVEMINDMSGDFRAPL
        +E PD++R+LE R+EEI +K + IDAVTG + G  I+EL+TRVD LE        +NYERGDSSTGSVAH+EE++ ELDSS+K+++EMIN MS DFRA L
Subjt:  MEFPDTVRFLEGRIEEISEKADAIDAVTGCLNGLLIKELLTRVDTLEAKAT---RINYERGDSSTGSVAHVEEQICELDSSKKSIVEMINDMSGDFRAPL

Query:  DVVRNEIADTSARVNLTMRAMANQAPTRGAIQVNRVKIPEPKPFCGVRDAKALENFIFDLE
        DVVRNEIAD +AR+NLTMRAMANQAP  GAI V+RVKIPEPKPFCG RDAKALEN+IFDLE
Subjt:  DVVRNEIADTSARVNLTMRAMANQAPTRGAIQVNRVKIPEPKPFCGVRDAKALENFIFDLE

KAA0032849.1 reverse transcriptase [Cucumis melo var. makuwa]3.1e-5469.57Show/hide
Query:  MEFPDTVRFLEGRIEEISEKADAIDAVTGCLNGLLIKELLTRVDTLEAKAT---RINYERGDSSTGSVAHVEEQICELDSSKKSIVEMINDMSGDFRAPL
        +E PD++R+LE R+EEISEK + IDAV G + G  I+EL+TRVD LE        +NYERGDSSTGSVAH+EE++ ELDSS+K+++EMIN MS DFRA L
Subjt:  MEFPDTVRFLEGRIEEISEKADAIDAVTGCLNGLLIKELLTRVDTLEAKAT---RINYERGDSSTGSVAHVEEQICELDSSKKSIVEMINDMSGDFRAPL

Query:  DVVRNEIADTSARVNLTMRAMANQAPTRGAIQVNRVKIPEPKPFCGVRDAKALENFIFDLE
        DVVRNEIAD +AR++LTMRAMANQAP  GAI V+RVKIPEPKPFCG RDAKALEN+IFDLE
Subjt:  DVVRNEIADTSARVNLTMRAMANQAPTRGAIQVNRVKIPEPKPFCGVRDAKALENFIFDLE

KAA0037220.1 reverse transcriptase [Cucumis melo var. makuwa]3.1e-5469.57Show/hide
Query:  MEFPDTVRFLEGRIEEISEKADAIDAVTGCLNGLLIKELLTRVDTLEAKAT---RINYERGDSSTGSVAHVEEQICELDSSKKSIVEMINDMSGDFRAPL
        +E PD++R+LE R+EEISEK + IDAV G + G  I+EL+TRVD LE        +NYERGDSSTGSVAH+EE++ ELDSS+K+++EMIN MS DFRA L
Subjt:  MEFPDTVRFLEGRIEEISEKADAIDAVTGCLNGLLIKELLTRVDTLEAKAT---RINYERGDSSTGSVAHVEEQICELDSSKKSIVEMINDMSGDFRAPL

Query:  DVVRNEIADTSARVNLTMRAMANQAPTRGAIQVNRVKIPEPKPFCGVRDAKALENFIFDLE
        DVVRNEIAD +AR++LTMRAMANQAP  GAI V+RVKIPEPKPFCG RDAKALEN+IFDLE
Subjt:  DVVRNEIADTSARVNLTMRAMANQAPTRGAIQVNRVKIPEPKPFCGVRDAKALENFIFDLE

KAA0053339.1 reverse transcriptase [Cucumis melo var. makuwa]1.1e-5470.19Show/hide
Query:  MEFPDTVRFLEGRIEEISEKADAIDAVTGCLNGLLIKELLTRVDTLEAKAT---RINYERGDSSTGSVAHVEEQICELDSSKKSIVEMINDMSGDFRAPL
        +E PD++R+LE R+EEISEK + IDAV G + G  I+EL+TRVD LE        +NYERGDSSTGSVAH+EE++ ELDSS+K+++EMIN MS DFRA L
Subjt:  MEFPDTVRFLEGRIEEISEKADAIDAVTGCLNGLLIKELLTRVDTLEAKAT---RINYERGDSSTGSVAHVEEQICELDSSKKSIVEMINDMSGDFRAPL

Query:  DVVRNEIADTSARVNLTMRAMANQAPTRGAIQVNRVKIPEPKPFCGVRDAKALENFIFDLE
        DVVRNEIAD +AR++LTMRAMANQAPT GAI V+RVKIPEPKPFCG RDAKALEN+IFDLE
Subjt:  DVVRNEIADTSARVNLTMRAMANQAPTRGAIQVNRVKIPEPKPFCGVRDAKALENFIFDLE

KAA0063412.1 reverse transcriptase [Cucumis melo var. makuwa]3.1e-5469.57Show/hide
Query:  MEFPDTVRFLEGRIEEISEKADAIDAVTGCLNGLLIKELLTRVDTLEAKAT---RINYERGDSSTGSVAHVEEQICELDSSKKSIVEMINDMSGDFRAPL
        +E PD++R+LE R+EEISEK + IDAV G + G  I+EL+TRVD LE        +NYERGDSSTGSVAH+EE++ ELDSS+K+++EMIN MS DFRA L
Subjt:  MEFPDTVRFLEGRIEEISEKADAIDAVTGCLNGLLIKELLTRVDTLEAKAT---RINYERGDSSTGSVAHVEEQICELDSSKKSIVEMINDMSGDFRAPL

Query:  DVVRNEIADTSARVNLTMRAMANQAPTRGAIQVNRVKIPEPKPFCGVRDAKALENFIFDLE
        DVVRNEIAD +AR++LTMRAMANQAP  GAI V+RVKIPEPKPFCG RDAKALEN+IFDLE
Subjt:  DVVRNEIADTSARVNLTMRAMANQAPTRGAIQVNRVKIPEPKPFCGVRDAKALENFIFDLE

TrEMBL top hitse value%identityAlignment
A0A5A7SKW3 Retrotrans_gag domain-containing protein1.1e-5469.57Show/hide
Query:  MEFPDTVRFLEGRIEEISEKADAIDAVTGCLNGLLIKELLTRVDTLEAKAT---RINYERGDSSTGSVAHVEEQICELDSSKKSIVEMINDMSGDFRAPL
        +E PD++R+LE R+EEI +K + IDAVTG + G  I+EL+TRVD LE        +NYERGDSSTGSVAH+EE++ ELDSS+K+++EMIN MS DFRA L
Subjt:  MEFPDTVRFLEGRIEEISEKADAIDAVTGCLNGLLIKELLTRVDTLEAKAT---RINYERGDSSTGSVAHVEEQICELDSSKKSIVEMINDMSGDFRAPL

Query:  DVVRNEIADTSARVNLTMRAMANQAPTRGAIQVNRVKIPEPKPFCGVRDAKALENFIFDLE
        DVVRNEIAD +AR+NLTMRAMANQAP  GAI V+RVKIPEPKPFCG RDAKALEN+IFDLE
Subjt:  DVVRNEIADTSARVNLTMRAMANQAPTRGAIQVNRVKIPEPKPFCGVRDAKALENFIFDLE

A0A5A7UIP7 Reverse transcriptase5.1e-5570.19Show/hide
Query:  MEFPDTVRFLEGRIEEISEKADAIDAVTGCLNGLLIKELLTRVDTLEAKAT---RINYERGDSSTGSVAHVEEQICELDSSKKSIVEMINDMSGDFRAPL
        +E PD++R+LE R+EEISEK + IDAV G + G  I+EL+TRVD LE        +NYERGDSSTGSVAH+EE++ ELDSS+K+++EMIN MS DFRA L
Subjt:  MEFPDTVRFLEGRIEEISEKADAIDAVTGCLNGLLIKELLTRVDTLEAKAT---RINYERGDSSTGSVAHVEEQICELDSSKKSIVEMINDMSGDFRAPL

Query:  DVVRNEIADTSARVNLTMRAMANQAPTRGAIQVNRVKIPEPKPFCGVRDAKALENFIFDLE
        DVVRNEIAD +AR++LTMRAMANQAPT GAI V+RVKIPEPKPFCG RDAKALEN+IFDLE
Subjt:  DVVRNEIADTSARVNLTMRAMANQAPTRGAIQVNRVKIPEPKPFCGVRDAKALENFIFDLE

A0A5D3BRZ6 Reverse transcriptase1.5e-5469.57Show/hide
Query:  MEFPDTVRFLEGRIEEISEKADAIDAVTGCLNGLLIKELLTRVDTLEAKAT---RINYERGDSSTGSVAHVEEQICELDSSKKSIVEMINDMSGDFRAPL
        +E PD++R+LE R+EEISEK + IDAV G + G  I+EL+TRVD LE        +NYERGDSSTGSVAH+EE++ ELDSS+K+++EMIN MS DFRA L
Subjt:  MEFPDTVRFLEGRIEEISEKADAIDAVTGCLNGLLIKELLTRVDTLEAKAT---RINYERGDSSTGSVAHVEEQICELDSSKKSIVEMINDMSGDFRAPL

Query:  DVVRNEIADTSARVNLTMRAMANQAPTRGAIQVNRVKIPEPKPFCGVRDAKALENFIFDLE
        DVVRNEIAD +AR++LTMRAMANQAP  GAI V+RVKIPEPKPFCG RDAKALEN+IFDLE
Subjt:  DVVRNEIADTSARVNLTMRAMANQAPTRGAIQVNRVKIPEPKPFCGVRDAKALENFIFDLE

A0A5D3C4R1 Reverse transcriptase1.5e-5469.57Show/hide
Query:  MEFPDTVRFLEGRIEEISEKADAIDAVTGCLNGLLIKELLTRVDTLEAKAT---RINYERGDSSTGSVAHVEEQICELDSSKKSIVEMINDMSGDFRAPL
        +E PD++R+LE R+EEISEK + IDAV G + G  I+EL+TRVD LE        +NYERGDSSTGSVAH+EE++ ELDSS+K+++EMIN MS DFRA L
Subjt:  MEFPDTVRFLEGRIEEISEKADAIDAVTGCLNGLLIKELLTRVDTLEAKAT---RINYERGDSSTGSVAHVEEQICELDSSKKSIVEMINDMSGDFRAPL

Query:  DVVRNEIADTSARVNLTMRAMANQAPTRGAIQVNRVKIPEPKPFCGVRDAKALENFIFDLE
        DVVRNEIAD +AR++LTMRAMANQAP  GAI V+RVKIPEPKPFCG RDAKALEN+IFDLE
Subjt:  DVVRNEIADTSARVNLTMRAMANQAPTRGAIQVNRVKIPEPKPFCGVRDAKALENFIFDLE

A0A5D3DQ20 Retrotrans_gag domain-containing protein1.5e-5469.57Show/hide
Query:  MEFPDTVRFLEGRIEEISEKADAIDAVTGCLNGLLIKELLTRVDTLEAKAT---RINYERGDSSTGSVAHVEEQICELDSSKKSIVEMINDMSGDFRAPL
        +E PD++R+LE R+EEISEK + IDAV G + G  I+EL+TRVD LE        +NYERGDSSTGSVAH+EE++ ELDSS+K+++EMIN MS DFRA L
Subjt:  MEFPDTVRFLEGRIEEISEKADAIDAVTGCLNGLLIKELLTRVDTLEAKAT---RINYERGDSSTGSVAHVEEQICELDSSKKSIVEMINDMSGDFRAPL

Query:  DVVRNEIADTSARVNLTMRAMANQAPTRGAIQVNRVKIPEPKPFCGVRDAKALENFIFDLE
        DVVRNEIAD +AR++LTMRAMANQAP  GAI V+RVKIPEPKPFCG RDAKALEN+IFDLE
Subjt:  DVVRNEIADTSARVNLTMRAMANQAPTRGAIQVNRVKIPEPKPFCGVRDAKALENFIFDLE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATTTCCAGACACCGTCCGCTTCTTGGAAGGTCGGATTGAAGAAATTTCTGAGAAAGCCGACGCTATTGATGCGGTGACCGGTTGCCTCAACGGATTACTTATAAA
GGAGTTGTTAACAAGAGTTGACACTTTAGAGGCAAAGGCTACAAGGATAAACTACGAGCGTGGGGACAGTTCAACGGGCTCTGTCGCCCATGTAGAGGAACAGATTTGCG
AGCTAGATAGCTCCAAAAAGTCGATTGTCGAGATGATAAACGACATGTCAGGGGATTTTCGTGCCCCCCTTGATGTTGTCAGGAATGAGATCGCAGACACGAGCGCGAGG
GTGAACCTCACGATGCGAGCCATGGCAAACCAAGCTCCAACTAGAGGAGCTATACAAGTTAACAGGGTGAAAATCCCCGAACCCAAACCCTTTTGTGGGGTGAGGGACGC
AAAAGCCTTGGAGAACTTCATATTTGACCTCGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGAATTTCCAGACACCGTCCGCTTCTTGGAAGGTCGGATTGAAGAAATTTCTGAGAAAGCCGACGCTATTGATGCGGTGACCGGTTGCCTCAACGGATTACTTATAAA
GGAGTTGTTAACAAGAGTTGACACTTTAGAGGCAAAGGCTACAAGGATAAACTACGAGCGTGGGGACAGTTCAACGGGCTCTGTCGCCCATGTAGAGGAACAGATTTGCG
AGCTAGATAGCTCCAAAAAGTCGATTGTCGAGATGATAAACGACATGTCAGGGGATTTTCGTGCCCCCCTTGATGTTGTCAGGAATGAGATCGCAGACACGAGCGCGAGG
GTGAACCTCACGATGCGAGCCATGGCAAACCAAGCTCCAACTAGAGGAGCTATACAAGTTAACAGGGTGAAAATCCCCGAACCCAAACCCTTTTGTGGGGTGAGGGACGC
AAAAGCCTTGGAGAACTTCATATTTGACCTCGAATAA
Protein sequenceShow/hide protein sequence
MEFPDTVRFLEGRIEEISEKADAIDAVTGCLNGLLIKELLTRVDTLEAKATRINYERGDSSTGSVAHVEEQICELDSSKKSIVEMINDMSGDFRAPLDVVRNEIADTSAR
VNLTMRAMANQAPTRGAIQVNRVKIPEPKPFCGVRDAKALENFIFDLE