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PI0024659 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0024659
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr10:1516284..1516785
RNA-Seq ExpressionPI0024659
SyntenyPI0024659
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047075.1 retrotransposon protein [Cucumis melo var. makuwa]9.3e-4258.74Show/hide
Query:  MRSPSCSGFGWNDELKCVIIEKDLYDIWVKSHQVAKGLLNKPFSHYDDLCYVFGRDRATGGRAETFVDVGSNVPREYDGFFAYDGNDMEFPTMNSQGLDI
        MR P+CSGFGWNDE KC+++EK+L+D WVKSH +AKGLLNK F HYD+L YVFG+DRATGGRAE+F D+GSN P  YD F A    D  F  M S GL++
Subjt:  MRSPSCSGFGWNDELKCVIIEKDLYDIWVKSHQVAKGLLNKPFSHYDDLCYVFGRDRATGGRAETFVDVGSNVPREYDGFFAYDGNDMEFPTMNSQGLDI

Query:  SPDNIMGTRPGRLSEDRTGSSGSKKKWGGQELETAEIIRSAME
        SPD++M TR  R+SE R  SSGSK+K  G   ++ +I+ +A+E
Subjt:  SPDNIMGTRPGRLSEDRTGSSGSKKKWGGQELETAEIIRSAME

KAA0048374.1 retrotransposon protein [Cucumis melo var. makuwa]2.2e-4358.74Show/hide
Query:  MRSPSCSGFGWNDELKCVIIEKDLYDIWVKSHQVAKGLLNKPFSHYDDLCYVFGRDRATGGRAETFVDVGSNVPREYDGFFAYDGNDMEFPTMNSQGLDI
        MR P+CSGFGWNDE KC++ EK+++D WV+SH  AKGLLNK F HYD+L YVF +D ATGGRAE+F DVGSN P  YD F A   +D +F  M S+GL++
Subjt:  MRSPSCSGFGWNDELKCVIIEKDLYDIWVKSHQVAKGLLNKPFSHYDDLCYVFGRDRATGGRAETFVDVGSNVPREYDGFFAYDGNDMEFPTMNSQGLDI

Query:  SPDNIMGTRPGRLSEDRTGSSGSKKKWGGQELETAEIIRSAME
        SPD +MGTR  R+SE R  SSGSK+K GG  +++ +I+R+A+E
Subjt:  SPDNIMGTRPGRLSEDRTGSSGSKKKWGGQELETAEIIRSAME

KAA0050782.1 retrotransposon protein [Cucumis melo var. makuwa]1.9e-4260.14Show/hide
Query:  MRSPSCSGFGWNDELKCVIIEKDLYDIWVKSHQVAKGLLNKPFSHYDDLCYVFGRDRATGGRAETFVDVGSNVPREYDGFFAYDGNDMEFPTMNSQGLDI
        MR P+CSGFGWNDE KC+I EK+++D WVKSH  AKGLLNK F HYD+L YVFG+DRATGGRAE+F D+GSN P  YD F A    D +FP M S GL++
Subjt:  MRSPSCSGFGWNDELKCVIIEKDLYDIWVKSHQVAKGLLNKPFSHYDDLCYVFGRDRATGGRAETFVDVGSNVPREYDGFFAYDGNDMEFPTMNSQGLDI

Query:  SPDNIMGTRPGRLSEDRTGSSGSKKKWGGQELETAEIIRSAME
        SPD++M TR  R+SE R  SSGSK K  G   ++ +I+R+A+E
Subjt:  SPDNIMGTRPGRLSEDRTGSSGSKKKWGGQELETAEIIRSAME

KAA0066208.1 retrotransposon protein [Cucumis melo var. makuwa]1.2e-4162.07Show/hide
Query:  MRSPSCSGFGWNDELKCVIIEKDLYDIWVKSHQVAKGLLNKPFSHYDDLCYVFGRDRATGGRAETFVDVGSNVP-REYDGFFAYDGNDMEFPTMNSQGLD
        MR P+CSGFGWNDE KC+I EK+L+D WV+SH  AKGLLNKPF +YD+L YVFGRDRATG  AETF DVGSN P   YD F   DGN+ +FP + SQG+D
Subjt:  MRSPSCSGFGWNDELKCVIIEKDLYDIWVKSHQVAKGLLNKPFSHYDDLCYVFGRDRATGGRAETFVDVGSNVP-REYDGFFAYDGNDMEFPTMNSQGLD

Query:  ISPDNIMGTRPGRLSEDRTGSSGSKKKWGGQELETAEIIRSAMEQ
        IS D++  +RP R SE RTGSSGSK+K G Q     E I  A++Q
Subjt:  ISPDNIMGTRPGRLSEDRTGSSGSKKKWGGQELETAEIIRSAMEQ

TYK05082.1 retrotransposon protein [Cucumis melo var. makuwa]1.4e-4259.44Show/hide
Query:  MRSPSCSGFGWNDELKCVIIEKDLYDIWVKSHQVAKGLLNKPFSHYDDLCYVFGRDRATGGRAETFVDVGSNVPREYDGFFAYDGNDMEFPTMNSQGLDI
        MR P+CSGFGWNDE KC+++EK+L+D WVKSH  AKGLLNK F HYD+L YVFG+DRATGGRAE+F D+GSN P  YD   A    D +FP M S GL++
Subjt:  MRSPSCSGFGWNDELKCVIIEKDLYDIWVKSHQVAKGLLNKPFSHYDDLCYVFGRDRATGGRAETFVDVGSNVPREYDGFFAYDGNDMEFPTMNSQGLDI

Query:  SPDNIMGTRPGRLSEDRTGSSGSKKKWGGQELETAEIIRSAME
        SPD++M TR  R+SE R  SSGSK+K  G   ++ +I+R+A+E
Subjt:  SPDNIMGTRPGRLSEDRTGSSGSKKKWGGQELETAEIIRSAME

TrEMBL top hitse value%identityAlignment
A0A5A7TZA5 Retrotransposon protein1.1e-4358.74Show/hide
Query:  MRSPSCSGFGWNDELKCVIIEKDLYDIWVKSHQVAKGLLNKPFSHYDDLCYVFGRDRATGGRAETFVDVGSNVPREYDGFFAYDGNDMEFPTMNSQGLDI
        MR P+CSGFGWNDE KC++ EK+++D WV+SH  AKGLLNK F HYD+L YVF +D ATGGRAE+F DVGSN P  YD F A   +D +F  M S+GL++
Subjt:  MRSPSCSGFGWNDELKCVIIEKDLYDIWVKSHQVAKGLLNKPFSHYDDLCYVFGRDRATGGRAETFVDVGSNVPREYDGFFAYDGNDMEFPTMNSQGLDI

Query:  SPDNIMGTRPGRLSEDRTGSSGSKKKWGGQELETAEIIRSAME
        SPD +MGTR  R+SE R  SSGSK+K GG  +++ +I+R+A+E
Subjt:  SPDNIMGTRPGRLSEDRTGSSGSKKKWGGQELETAEIIRSAME

A0A5A7U098 Retrotransposon protein4.5e-4258.74Show/hide
Query:  MRSPSCSGFGWNDELKCVIIEKDLYDIWVKSHQVAKGLLNKPFSHYDDLCYVFGRDRATGGRAETFVDVGSNVPREYDGFFAYDGNDMEFPTMNSQGLDI
        MR P+CSGFGWNDE KC+++EK+L+D WVKSH +AKGLLNK F HYD+L YVFG+DRATGGRAE+F D+GSN P  YD F A    D  F  M S GL++
Subjt:  MRSPSCSGFGWNDELKCVIIEKDLYDIWVKSHQVAKGLLNKPFSHYDDLCYVFGRDRATGGRAETFVDVGSNVPREYDGFFAYDGNDMEFPTMNSQGLDI

Query:  SPDNIMGTRPGRLSEDRTGSSGSKKKWGGQELETAEIIRSAME
        SPD++M TR  R+SE R  SSGSK+K  G   ++ +I+ +A+E
Subjt:  SPDNIMGTRPGRLSEDRTGSSGSKKKWGGQELETAEIIRSAME

A0A5A7U4M2 Retrotransposon protein9.1e-4360.14Show/hide
Query:  MRSPSCSGFGWNDELKCVIIEKDLYDIWVKSHQVAKGLLNKPFSHYDDLCYVFGRDRATGGRAETFVDVGSNVPREYDGFFAYDGNDMEFPTMNSQGLDI
        MR P+CSGFGWNDE KC+I EK+++D WVKSH  AKGLLNK F HYD+L YVFG+DRATGGRAE+F D+GSN P  YD F A    D +FP M S GL++
Subjt:  MRSPSCSGFGWNDELKCVIIEKDLYDIWVKSHQVAKGLLNKPFSHYDDLCYVFGRDRATGGRAETFVDVGSNVPREYDGFFAYDGNDMEFPTMNSQGLDI

Query:  SPDNIMGTRPGRLSEDRTGSSGSKKKWGGQELETAEIIRSAME
        SPD++M TR  R+SE R  SSGSK K  G   ++ +I+R+A+E
Subjt:  SPDNIMGTRPGRLSEDRTGSSGSKKKWGGQELETAEIIRSAME

A0A5A7VES2 Retrotransposon protein5.9e-4262.07Show/hide
Query:  MRSPSCSGFGWNDELKCVIIEKDLYDIWVKSHQVAKGLLNKPFSHYDDLCYVFGRDRATGGRAETFVDVGSNVP-REYDGFFAYDGNDMEFPTMNSQGLD
        MR P+CSGFGWNDE KC+I EK+L+D WV+SH  AKGLLNKPF +YD+L YVFGRDRATG  AETF DVGSN P   YD F   DGN+ +FP + SQG+D
Subjt:  MRSPSCSGFGWNDELKCVIIEKDLYDIWVKSHQVAKGLLNKPFSHYDDLCYVFGRDRATGGRAETFVDVGSNVP-REYDGFFAYDGNDMEFPTMNSQGLD

Query:  ISPDNIMGTRPGRLSEDRTGSSGSKKKWGGQELETAEIIRSAMEQ
        IS D++  +RP R SE RTGSSGSK+K G Q     E I  A++Q
Subjt:  ISPDNIMGTRPGRLSEDRTGSSGSKKKWGGQELETAEIIRSAMEQ

A0A5D3C1M0 Retrotransposon protein7.0e-4359.44Show/hide
Query:  MRSPSCSGFGWNDELKCVIIEKDLYDIWVKSHQVAKGLLNKPFSHYDDLCYVFGRDRATGGRAETFVDVGSNVPREYDGFFAYDGNDMEFPTMNSQGLDI
        MR P+CSGFGWNDE KC+++EK+L+D WVKSH  AKGLLNK F HYD+L YVFG+DRATGGRAE+F D+GSN P  YD   A    D +FP M S GL++
Subjt:  MRSPSCSGFGWNDELKCVIIEKDLYDIWVKSHQVAKGLLNKPFSHYDDLCYVFGRDRATGGRAETFVDVGSNVPREYDGFFAYDGNDMEFPTMNSQGLDI

Query:  SPDNIMGTRPGRLSEDRTGSSGSKKKWGGQELETAEIIRSAME
        SPD++M TR  R+SE R  SSGSK+K  G   ++ +I+R+A+E
Subjt:  SPDNIMGTRPGRLSEDRTGSSGSKKKWGGQELETAEIIRSAME

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G02210.1 unknown protein1.3e-0429.79Show/hide
Query:  GFGWNDELKCVIIEKDLYDIWVKSHQVAKGLLNKPFSHYDDLCYVFG
        GF W++E + V  + +++  ++K+H+ A+  + +P  +Y DLC + G
Subjt:  GFGWNDELKCVIIEKDLYDIWVKSHQVAKGLLNKPFSHYDDLCYVFG

AT4G02210.2 unknown protein1.3e-0429.79Show/hide
Query:  GFGWNDELKCVIIEKDLYDIWVKSHQVAKGLLNKPFSHYDDLCYVFG
        GF W++E + V  + +++  ++K+H+ A+  + +P  +Y DLC + G
Subjt:  GFGWNDELKCVIIEKDLYDIWVKSHQVAKGLLNKPFSHYDDLCYVFG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGAGTCCATCGTGTAGTGGGTTTGGTTGGAACGATGAGCTCAAATGCGTCATTATCGAGAAAGACTTGTACGACATTTGGGTGAAGAGTCATCAAGTTGCGAAGGG
CCTCCTAAATAAACCTTTTTCCCATTACGACGACCTATGCTATGTATTTGGAAGAGATCGTGCAACAGGAGGTCGCGCTGAAACCTTTGTCGATGTTGGGTCCAACGTGC
CTAGAGAGTACGATGGATTCTTCGCTTACGACGGGAACGATATGGAGTTCCCCACGATGAATAGTCAGGGACTGGACATCTCACCTGACAACATAATGGGCACACGACCC
GGTCGGTTGTCTGAGGATAGGACTGGTTCGAGCGGTTCGAAGAAGAAATGGGGAGGGCAGGAATTAGAGACGGCGGAAATTATTCGCAGTGCCATGGAACAATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGAGTCCATCGTGTAGTGGGTTTGGTTGGAACGATGAGCTCAAATGCGTCATTATCGAGAAAGACTTGTACGACATTTGGGTGAAGAGTCATCAAGTTGCGAAGGG
CCTCCTAAATAAACCTTTTTCCCATTACGACGACCTATGCTATGTATTTGGAAGAGATCGTGCAACAGGAGGTCGCGCTGAAACCTTTGTCGATGTTGGGTCCAACGTGC
CTAGAGAGTACGATGGATTCTTCGCTTACGACGGGAACGATATGGAGTTCCCCACGATGAATAGTCAGGGACTGGACATCTCACCTGACAACATAATGGGCACACGACCC
GGTCGGTTGTCTGAGGATAGGACTGGTTCGAGCGGTTCGAAGAAGAAATGGGGAGGGCAGGAATTAGAGACGGCGGAAATTATTCGCAGTGCCATGGAACAATGA
Protein sequenceShow/hide protein sequence
MRSPSCSGFGWNDELKCVIIEKDLYDIWVKSHQVAKGLLNKPFSHYDDLCYVFGRDRATGGRAETFVDVGSNVPREYDGFFAYDGNDMEFPTMNSQGLDISPDNIMGTRP
GRLSEDRTGSSGSKKKWGGQELETAEIIRSAMEQ