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PI0024665 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0024665
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr07:2907019..2908293
RNA-Seq ExpressionPI0024665
SyntenyPI0024665
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN44034.1 hypothetical protein Csa_011882 [Cucumis sativus]8.8e-3753.72Show/hide
Query:  MGSHARVVWSLLGLDETYNPVIAVIQGKTDISWLDMQSELLIFEKRLEHQNTQRNVGNAGSNIMANVAQNRGIPDPKFPNQSYQNNSRSSNG--QRGGHN
        MGS  +V   LL LDE YNP+  VIQGK++ISWLDMQSELLIFEKRLEHQN+Q+N  N                D + P  SY +NS  SNG  QRGG+N
Subjt:  MGSHARVVWSLLGLDETYNPVIAVIQGKTDISWLDMQSELLIFEKRLEHQNTQRNVGNAGSNIMANVAQNRGIPDPKFPNQSYQNNSRSSNG--QRGGHN

Query:  FNN---KGRGRGRGNKPTCQICNKYGHSASACYNSPNKVGQNTNISTNQPTQTFQNPTAFVTAQGSNPFATPEIVMSRLLWEMVKNFK
        F+N   +G GRGR NKPTCQ+C KYGHSA              NI+T  P  + QNPT FVT   +NPFATPE V+S LL EMV ++K
Subjt:  FNN---KGRGRGRGNKPTCQICNKYGHSASACYNSPNKVGQNTNISTNQPTQTFQNPTAFVTAQGSNPFATPEIVMSRLLWEMVKNFK

TYK05754.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.4e-3453.71Show/hide
Query:  SLLGLDETYNPVIAVIQGKTDISWLDMQSELLIFEKRLEHQNTQRNVGNAGSNIMANVAQNRGIPD-PKFPNQSYQNNSR-SSNGQRGGHNFNNKGRGRG
        +LLGLDE YNPVIAVIQGK +ISW+DMQSELL FEKRLEHQ+TQ+N  N   N++ N+AQNR   D  K+ N  +  N+R +S GQRGG N   +GRG+G
Subjt:  SLLGLDETYNPVIAVIQGKTDISWLDMQSELLIFEKRLEHQNTQRNVGNAGSNIMANVAQNRGIPD-PKFPNQSYQNNSR-SSNGQRGGHNFNNKGRGRG

Query:  RGNKPTCQICNKYGHSASACYNSPNKV----------GQNTNISTNQPTQTFQNPTAFVTAQGSNPFATPEIVMS
        RGNKPTCQ+C KYGHSA  CYN  NK            Q++N S +       N T  VT Q  N FAT + V++
Subjt:  RGNKPTCQICNKYGHSASACYNSPNKV----------GQNTNISTNQPTQTFQNPTAFVTAQGSNPFATPEIVMS

XP_016902197.1 PREDICTED: uncharacterized protein LOC107991581 isoform X1 [Cucumis melo]1.3e-2448.52Show/hide
Query:  GLDETYNPVIAVIQGKTDISWLDMQSELLIFEKRLEHQNTQ-RNVGNAGSNIMANVAQNRGIPDPKFPNQS----YQNNSRSSNGQRGGHNFNNKGRGRG
        GLDE YN VI VIQGK DISWLDMQS+LLIFEKRL+HQNTQ +N GN   +   N+AQ   +   +  NQS    Y  N +  +GQRG  N         
Subjt:  GLDETYNPVIAVIQGKTDISWLDMQSELLIFEKRLEHQNTQ-RNVGNAGSNIMANVAQNRGIPDPKFPNQS----YQNNSRSSNGQRGGHNFNNKGRGRG

Query:  RGNKPTCQICNKYGHSASACYNSPNK-----VGQNTNISTNQPTQTFQNPTAFVTAQGSNPFATPEIVM
          N PTCQ+C KYGHSA  CYN  NK     + QN N  ++  + +  NP  FV+ Q + PFATP+ V+
Subjt:  RGNKPTCQICNKYGHSASACYNSPNK-----VGQNTNISTNQPTQTFQNPTAFVTAQGSNPFATPEIVM

XP_016902203.1 PREDICTED: uncharacterized protein LOC107991581 isoform X3 [Cucumis melo]1.3e-2448.52Show/hide
Query:  GLDETYNPVIAVIQGKTDISWLDMQSELLIFEKRLEHQNTQ-RNVGNAGSNIMANVAQNRGIPDPKFPNQS----YQNNSRSSNGQRGGHNFNNKGRGRG
        GLDE YN VI VIQGK DISWLDMQS+LLIFEKRL+HQNTQ +N GN   +   N+AQ   +   +  NQS    Y  N +  +GQRG  N         
Subjt:  GLDETYNPVIAVIQGKTDISWLDMQSELLIFEKRLEHQNTQ-RNVGNAGSNIMANVAQNRGIPDPKFPNQS----YQNNSRSSNGQRGGHNFNNKGRGRG

Query:  RGNKPTCQICNKYGHSASACYNSPNK-----VGQNTNISTNQPTQTFQNPTAFVTAQGSNPFATPEIVM
          N PTCQ+C KYGHSA  CYN  NK     + QN N  ++  + +  NP  FV+ Q + PFATP+ V+
Subjt:  RGNKPTCQICNKYGHSASACYNSPNK-----VGQNTNISTNQPTQTFQNPTAFVTAQGSNPFATPEIVM

XP_038905164.1 uncharacterized protein LOC120091275 isoform X4 [Benincasa hispida]1.1e-2345.56Show/hide
Query:  LLGLDETYNPVIAVIQGKTDISWLDMQSELLIFEKRLEHQNTQRNVGNAGSNIMANVAQNRGIPDPKFPNQSYQNNSRSSN---GQRGGHNFNNKGRGRG
        LLGLDE YN ++A+IQG+ D+SWLDMQSELL++E+RLEHQ+ Q+     G N ++N + N  + + +  NQ+ + NS + +   GQRGG   + +GRGRG
Subjt:  LLGLDETYNPVIAVIQGKTDISWLDMQSELLIFEKRLEHQNTQRNVGNAGSNIMANVAQNRGIPDPKFPNQSYQNNSRSSN---GQRGGHNFNNKGRGRG

Query:  RGN-KPTCQICNKYGHSASACY---------NSP-NKVGQNTNISTNQPTQTFQNPTAFVTAQGSNPFATPEIVMSRLLW
        R N KP CQ+C K GH A  C+         NSP NKV    N   NQ   T  +PTA   A GSNPF T +  M+   W
Subjt:  RGN-KPTCQICNKYGHSASACY---------NSP-NKVGQNTNISTNQPTQTFQNPTAFVTAQGSNPFATPEIVMSRLLW

TrEMBL top hitse value%identityAlignment
A0A0A0K542 Uncharacterized protein4.3e-3753.72Show/hide
Query:  MGSHARVVWSLLGLDETYNPVIAVIQGKTDISWLDMQSELLIFEKRLEHQNTQRNVGNAGSNIMANVAQNRGIPDPKFPNQSYQNNSRSSNG--QRGGHN
        MGS  +V   LL LDE YNP+  VIQGK++ISWLDMQSELLIFEKRLEHQN+Q+N  N                D + P  SY +NS  SNG  QRGG+N
Subjt:  MGSHARVVWSLLGLDETYNPVIAVIQGKTDISWLDMQSELLIFEKRLEHQNTQRNVGNAGSNIMANVAQNRGIPDPKFPNQSYQNNSRSSNG--QRGGHN

Query:  FNN---KGRGRGRGNKPTCQICNKYGHSASACYNSPNKVGQNTNISTNQPTQTFQNPTAFVTAQGSNPFATPEIVMSRLLWEMVKNFK
        F+N   +G GRGR NKPTCQ+C KYGHSA              NI+T  P  + QNPT FVT   +NPFATPE V+S LL EMV ++K
Subjt:  FNN---KGRGRGRGNKPTCQICNKYGHSASACYNSPNKVGQNTNISTNQPTQTFQNPTAFVTAQGSNPFATPEIVMSRLLWEMVKNFK

A0A1S4E1U6 uncharacterized protein LOC107991581 isoform X16.4e-2548.52Show/hide
Query:  GLDETYNPVIAVIQGKTDISWLDMQSELLIFEKRLEHQNTQ-RNVGNAGSNIMANVAQNRGIPDPKFPNQS----YQNNSRSSNGQRGGHNFNNKGRGRG
        GLDE YN VI VIQGK DISWLDMQS+LLIFEKRL+HQNTQ +N GN   +   N+AQ   +   +  NQS    Y  N +  +GQRG  N         
Subjt:  GLDETYNPVIAVIQGKTDISWLDMQSELLIFEKRLEHQNTQ-RNVGNAGSNIMANVAQNRGIPDPKFPNQS----YQNNSRSSNGQRGGHNFNNKGRGRG

Query:  RGNKPTCQICNKYGHSASACYNSPNK-----VGQNTNISTNQPTQTFQNPTAFVTAQGSNPFATPEIVM
          N PTCQ+C KYGHSA  CYN  NK     + QN N  ++  + +  NP  FV+ Q + PFATP+ V+
Subjt:  RGNKPTCQICNKYGHSASACYNSPNK-----VGQNTNISTNQPTQTFQNPTAFVTAQGSNPFATPEIVM

A0A1S4E1V2 uncharacterized protein LOC107991581 isoform X36.4e-2548.52Show/hide
Query:  GLDETYNPVIAVIQGKTDISWLDMQSELLIFEKRLEHQNTQ-RNVGNAGSNIMANVAQNRGIPDPKFPNQS----YQNNSRSSNGQRGGHNFNNKGRGRG
        GLDE YN VI VIQGK DISWLDMQS+LLIFEKRL+HQNTQ +N GN   +   N+AQ   +   +  NQS    Y  N +  +GQRG  N         
Subjt:  GLDETYNPVIAVIQGKTDISWLDMQSELLIFEKRLEHQNTQ-RNVGNAGSNIMANVAQNRGIPDPKFPNQS----YQNNSRSSNGQRGGHNFNNKGRGRG

Query:  RGNKPTCQICNKYGHSASACYNSPNK-----VGQNTNISTNQPTQTFQNPTAFVTAQGSNPFATPEIVM
          N PTCQ+C KYGHSA  CYN  NK     + QN N  ++  + +  NP  FV+ Q + PFATP+ V+
Subjt:  RGNKPTCQICNKYGHSASACYNSPNK-----VGQNTNISTNQPTQTFQNPTAFVTAQGSNPFATPEIVM

A0A5A7SIT7 Uncharacterized protein1.0e-2245.61Show/hide
Query:  LLGLDETYNPVIAVIQGKTDISWLDMQSELLIFEKRLEHQNTQ---RNVGNAGSNIMANVAQNRGIPDPKFPNQS--YQNNSRSSNGQRGGHNFNNKGRG
        LLGLDE YN VI VIQGK DISWLDMQS+LLIFEK L+HQNTQ   +  GN   +   N+AQ   +   +  +    Y  N +  +GQRG  N       
Subjt:  LLGLDETYNPVIAVIQGKTDISWLDMQSELLIFEKRLEHQNTQ---RNVGNAGSNIMANVAQNRGIPDPKFPNQS--YQNNSRSSNGQRGGHNFNNKGRG

Query:  RGRGNKPTCQICNKYGHSASACYNSPNK-----VGQNTNISTNQPTQTFQNPTAFVTAQGSNPFATPEIVM
            N PTCQ+C KYGHSA  CYN  NK     + Q+ N  ++  + +  NP  FV+ Q + PFATP+ V+
Subjt:  RGRGNKPTCQICNKYGHSASACYNSPNK-----VGQNTNISTNQPTQTFQNPTAFVTAQGSNPFATPEIVM

A0A5D3C373 Retrovirus-related Pol polyprotein from transposon TNT 1-946.8e-3553.71Show/hide
Query:  SLLGLDETYNPVIAVIQGKTDISWLDMQSELLIFEKRLEHQNTQRNVGNAGSNIMANVAQNRGIPD-PKFPNQSYQNNSR-SSNGQRGGHNFNNKGRGRG
        +LLGLDE YNPVIAVIQGK +ISW+DMQSELL FEKRLEHQ+TQ+N  N   N++ N+AQNR   D  K+ N  +  N+R +S GQRGG N   +GRG+G
Subjt:  SLLGLDETYNPVIAVIQGKTDISWLDMQSELLIFEKRLEHQNTQRNVGNAGSNIMANVAQNRGIPD-PKFPNQSYQNNSR-SSNGQRGGHNFNNKGRGRG

Query:  RGNKPTCQICNKYGHSASACYNSPNKV----------GQNTNISTNQPTQTFQNPTAFVTAQGSNPFATPEIVMS
        RGNKPTCQ+C KYGHSA  CYN  NK            Q++N S +       N T  VT Q  N FAT + V++
Subjt:  RGNKPTCQICNKYGHSASACYNSPNKV----------GQNTNISTNQPTQTFQNPTAFVTAQGSNPFATPEIVMS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAGCCACGCAAGAGTTGTTTGGTCTCTCTTAGGGCTTGATGAAACTTACAATCCAGTCATAGCAGTGATTCAAGGTAAAACTGACATTTCCTGGCTTGATATGCA
GTCCGAACTCCTCATATTCGAGAAACGACTGGAACACCAGAACACTCAGAGGAATGTTGGAAATGCTGGGAGCAACATAATGGCAAACGTTGCTCAGAACAGAGGAATCC
CCGATCCAAAGTTTCCGAATCAATCTTACCAAAACAATAGCCGGTCGTCCAATGGGCAACGAGGAGGCCACAACTTCAATAACAAAGGACGAGGGAGAGGCAGAGGTAAC
AAACCTACTTGTCAAATCTGCAACAAGTATGGCCACTCTGCCTCTGCTTGCTACAACAGTCCAAATAAAGTTGGACAAAACACAAACATCTCCACCAATCAACCAACACA
AACCTTTCAGAATCCCACTGCCTTCGTAACTGCCCAAGGATCAAATCCATTTGCCACTCCCGAAATTGTAATGAGCAGGTTGTTGTGGGAAATGGTGAAAAACTTCAAAT
AA
mRNA sequenceShow/hide mRNA sequence
ATGGGAAGCCACGCAAGAGTTGTTTGGTCTCTCTTAGGGCTTGATGAAACTTACAATCCAGTCATAGCAGTGATTCAAGGTAAAACTGACATTTCCTGGCTTGATATGCA
GTCCGAACTCCTCATATTCGAGAAACGACTGGAACACCAGAACACTCAGAGGAATGTTGGAAATGCTGGGAGCAACATAATGGCAAACGTTGCTCAGAACAGAGGAATCC
CCGATCCAAAGTTTCCGAATCAATCTTACCAAAACAATAGCCGGTCGTCCAATGGGCAACGAGGAGGCCACAACTTCAATAACAAAGGACGAGGGAGAGGCAGAGGTAAC
AAACCTACTTGTCAAATCTGCAACAAGTATGGCCACTCTGCCTCTGCTTGCTACAACAGTCCAAATAAAGTTGGACAAAACACAAACATCTCCACCAATCAACCAACACA
AACCTTTCAGAATCCCACTGCCTTCGTAACTGCCCAAGGATCAAATCCATTTGCCACTCCCGAAATTGTAATGAGCAGGTTGTTGTGGGAAATGGTGAAAAACTTCAAAT
AA
Protein sequenceShow/hide protein sequence
MGSHARVVWSLLGLDETYNPVIAVIQGKTDISWLDMQSELLIFEKRLEHQNTQRNVGNAGSNIMANVAQNRGIPDPKFPNQSYQNNSRSSNGQRGGHNFNNKGRGRGRGN
KPTCQICNKYGHSASACYNSPNKVGQNTNISTNQPTQTFQNPTAFVTAQGSNPFATPEIVMSRLLWEMVKNFK