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PI0024681 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0024681
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr11:10972388..10976923
RNA-Seq ExpressionPI0024681
SyntenyPI0024681
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039558.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.3e-1969.14Show/hide
Query:  KLKREPYPDVMSIMIADVTTEAAIAEMERKINLLMKAAKEGDHEIAALREQMQTRKTVESSQTPVVKVDEKGKNLDNVQSP
        K K+E  PDVMS+M+AD+T EAA+AEMERKIN LMKAA+E DHEI ALREQM+TR+T ESSQTPVVK  +KGKN+     P
Subjt:  KLKREPYPDVMSIMIADVTTEAAIAEMERKINLLMKAAKEGDHEIAALREQMQTRKTVESSQTPVVKVDEKGKNLDNVQSP

KAA0041100.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.6e-2060.67Show/hide
Query:  KLKREPYPDVMSIMIADVTTEAAIAEMERKINLLMKAAKEGDHEIAALREQMQTRKTVESSQTPVVKVDEKGKNLDNVQSPYTSPYAQK
        K K+E +PDVMS+M+AD+TTEAA+AEM+RKIN LM   +E DHEI ALREQM+TR+T ESSQTP+VK  +KGKN+      Y+ PY ++
Subjt:  KLKREPYPDVMSIMIADVTTEAAIAEMERKINLLMKAAKEGDHEIAALREQMQTRKTVESSQTPVVKVDEKGKNLDNVQSPYTSPYAQK

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]2.3e-1970.51Show/hide
Query:  REPYPDVMSIMIADVTTEAAIAEMERKINLLMKAAKEGDHEIAALREQMQTRKTVESSQTPVVKVDEKGKNLDNVQSP
        +E +PDVMS+M+ADV  E A+AEMERKINLLMK   E DHEIAAL+EQMQTR+T ESSQTPVVKVD+KGKN+     P
Subjt:  REPYPDVMSIMIADVTTEAAIAEMERKINLLMKAAKEGDHEIAALREQMQTRKTVESSQTPVVKVDEKGKNLDNVQSP

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]2.3e-1970.51Show/hide
Query:  REPYPDVMSIMIADVTTEAAIAEMERKINLLMKAAKEGDHEIAALREQMQTRKTVESSQTPVVKVDEKGKNLDNVQSP
        +E +PDVMS+M+ADV  E A+AEMERKINLLMK   E DHEIAAL+EQMQTR+T ESSQTPVVKVD+KGKN+     P
Subjt:  REPYPDVMSIMIADVTTEAAIAEMERKINLLMKAAKEGDHEIAALREQMQTRKTVESSQTPVVKVDEKGKNLDNVQSP

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]2.3e-1970.51Show/hide
Query:  REPYPDVMSIMIADVTTEAAIAEMERKINLLMKAAKEGDHEIAALREQMQTRKTVESSQTPVVKVDEKGKNLDNVQSP
        +E +PDVMS+M+ADV  E A+AEMERKINLLMK   E DHEIAAL+EQMQTR+T ESSQTPVVKVD+KGKN+     P
Subjt:  REPYPDVMSIMIADVTTEAAIAEMERKINLLMKAAKEGDHEIAALREQMQTRKTVESSQTPVVKVDEKGKNLDNVQSP

TrEMBL top hitse value%identityAlignment
A0A5A7T9K9 Ty3-gypsy retrotransposon protein6.4e-2069.14Show/hide
Query:  KLKREPYPDVMSIMIADVTTEAAIAEMERKINLLMKAAKEGDHEIAALREQMQTRKTVESSQTPVVKVDEKGKNLDNVQSP
        K K+E  PDVMS+M+AD+T EAA+AEMERKIN LMKAA+E DHEI ALREQM+TR+T ESSQTPVVK  +KGKN+     P
Subjt:  KLKREPYPDVMSIMIADVTTEAAIAEMERKINLLMKAAKEGDHEIAALREQMQTRKTVESSQTPVVKVDEKGKNLDNVQSP

A0A5A7TCU7 Ty3-gypsy retrotransposon protein2.2e-2060.67Show/hide
Query:  KLKREPYPDVMSIMIADVTTEAAIAEMERKINLLMKAAKEGDHEIAALREQMQTRKTVESSQTPVVKVDEKGKNLDNVQSPYTSPYAQK
        K K+E +PDVMS+M+AD+TTEAA+AEM+RKIN LM   +E DHEI ALREQM+TR+T ESSQTP+VK  +KGKN+      Y+ PY ++
Subjt:  KLKREPYPDVMSIMIADVTTEAAIAEMERKINLLMKAAKEGDHEIAALREQMQTRKTVESSQTPVVKVDEKGKNLDNVQSPYTSPYAQK

A0A5A7U8E4 Retrotransposon gag protein1.9e-1950Show/hide
Query:  KLKREPYPDVMSIMIADVTTEAAIAEMERKINLLMKAAKEGDHEIAALREQMQTRKTVESSQTPVVKVDEKGKNLDNVQSPYTSPYAQKTRSSSQTAYFA
        ++K E +PDVMS+M+AD+T EAA+AEMERKIN LMKA +E DHEI  LREQM+TR+T ESSQTPVVK   KGKN+D + +   + Y        QT +  
Subjt:  KLKREPYPDVMSIMIADVTTEAAIAEMERKINLLMKAAKEGDHEIAALREQMQTRKTVESSQTPVVKVDEKGKNLDNVQSPYTSPYAQKTRSSSQTAYFA

Query:  RQCFMTKASRNTPSAEVYFPCRVTQF
         + + TK   N      Y P +  QF
Subjt:  RQCFMTKASRNTPSAEVYFPCRVTQF

A0A5D3BY54 Ty3-gypsy retrotransposon protein1.4e-1966.67Show/hide
Query:  KLKREPYPDVMSIMIADVTTEAAIAEMERKINLLMKAAKEGDHEIAALREQMQTRKTVESSQTPVVKVDEKGKNLDNVQSP
        K K+E +PDVMS+M+AD+T EAA+AEMERKIN LMKA +E DHEI ALREQM+TR+T ESSQTP+VK  +KGKN+     P
Subjt:  KLKREPYPDVMSIMIADVTTEAAIAEMERKINLLMKAAKEGDHEIAALREQMQTRKTVESSQTPVVKVDEKGKNLDNVQSP

A0A5D3DXA8 Ty3-gypsy retrotransposon protein1.1e-1963.95Show/hide
Query:  KLKREPYPDVMSIMIADVTTEAAIAEMERKINLLMKAAKEGDHEIAALREQMQTRKTVESSQTPVVKVDEKGKNLDNVQSPYTSPY
        K K+E +PDVMSIM+AD+T EAA+AEMERKIN LMK  +E +HEI ALREQM TR+T ESSQTPVVK  +KGKN+D + +   + Y
Subjt:  KLKREPYPDVMSIMIADVTTEAAIAEMERKINLLMKAAKEGDHEIAALREQMQTRKTVESSQTPVVKVDEKGKNLDNVQSPYTSPY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACTTGGGCCTTGGGCCTTGTGGGCTTGACGATTGCATGCGAGCTGATGTTGGACTTGGCGAGCTGATGATTGCGATGCATCTTGCGAGCTTGAGTATTCAGCTGAA
TGTGCGAGCTGATGAAGTACTTCGCGAGGCTCAAGTCAGAAGGCAATGCCTTGCGGTGAAGGCAGGTTGCGATGAGCCATGCGATTTGAAATTAAAGAGGGAACCATACC
CCGATGTGATGTCTATCATGATAGCTGATGTAACGACTGAGGCTGCTATAGCAGAGATGGAGAGAAAAATCAATCTCCTGATGAAAGCTGCCAAGGAGGGAGACCACGAA
ATCGCAGCTTTGAGAGAGCAAATGCAGACTCGTAAAACTGTTGAGTCAAGTCAAACTCCTGTTGTTAAAGTCGACGAGAAAGGAAAGAATCTGGATAATGTGCAAAGCCC
CTACACAAGCCCTTATGCACAAAAAACGCGTAGCTCATCGCAAACTGCCTACTTCGCGAGGCAATGCTTCATGACCAAAGCTTCGCGAAATACTCCATCTGCAGAAGTAT
ACTTCCCTTGCCGCGTAACACAATTCGTTCACCAACTCACCGAATCAAGCTCAGACTCACTCAAACGCATGCAACCTTCATCAACTCGCATCCAGCTCGCAGAATGCATC
TCACTTGTTCACCTCACAACCTTCAGCTCGCCTAAAAACGGTTACTTCAACCATCAAGCCCAAGCCCATGGCCCAAGCCCAATGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGACTTGGGCCTTGGGCCTTGTGGGCTTGACGATTGCATGCGAGCTGATGTTGGACTTGGCGAGCTGATGATTGCGATGCATCTTGCGAGCTTGAGTATTCAGCTGAA
TGTGCGAGCTGATGAAGTACTTCGCGAGGCTCAAGTCAGAAGGCAATGCCTTGCGGTGAAGGCAGGTTGCGATGAGCCATGCGATTTGAAATTAAAGAGGGAACCATACC
CCGATGTGATGTCTATCATGATAGCTGATGTAACGACTGAGGCTGCTATAGCAGAGATGGAGAGAAAAATCAATCTCCTGATGAAAGCTGCCAAGGAGGGAGACCACGAA
ATCGCAGCTTTGAGAGAGCAAATGCAGACTCGTAAAACTGTTGAGTCAAGTCAAACTCCTGTTGTTAAAGTCGACGAGAAAGGAAAGAATCTGGATAATGTGCAAAGCCC
CTACACAAGCCCTTATGCACAAAAAACGCGTAGCTCATCGCAAACTGCCTACTTCGCGAGGCAATGCTTCATGACCAAAGCTTCGCGAAATACTCCATCTGCAGAAGTAT
ACTTCCCTTGCCGCGTAACACAATTCGTTCACCAACTCACCGAATCAAGCTCAGACTCACTCAAACGCATGCAACCTTCATCAACTCGCATCCAGCTCGCAGAATGCATC
TCACTTGTTCACCTCACAACCTTCAGCTCGCCTAAAAACGGTTACTTCAACCATCAAGCCCAAGCCCATGGCCCAAGCCCAATGTAA
Protein sequenceShow/hide protein sequence
MDLGLGPCGLDDCMRADVGLGELMIAMHLASLSIQLNVRADEVLREAQVRRQCLAVKAGCDEPCDLKLKREPYPDVMSIMIADVTTEAAIAEMERKINLLMKAAKEGDHE
IAALREQMQTRKTVESSQTPVVKVDEKGKNLDNVQSPYTSPYAQKTRSSSQTAYFARQCFMTKASRNTPSAEVYFPCRVTQFVHQLTESSSDSLKRMQPSSTRIQLAECI
SLVHLTTFSSPKNGYFNHQAQAHGPSPM