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PI0024683 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0024683
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr04:21705782..21707299
RNA-Seq ExpressionPI0024683
SyntenyPI0024683
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
WP_217833177.1 retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002]3.2e-1930.93Show/hide
Query:  FDENARFEIKPVMLQMIQNAGQFSGHLGEDPHEHIKSFYSICTSFHMPGISPD---LSSSPLTLKDEAKRWANALEDGENAGQFGGHLREDLHEHIRSFY
        F+ N RFE+KPVMLQM+Q AGQF G  GEDPH H+KSF  IC++F M G+  D   L+  P +L+DEA++WA + E G                      
Subjt:  FDENARFEIKPVMLQMIQNAGQFSGHLGEDPHEHIKSFYSICTSFHMPGISPD---LSSSPLTLKDEAKRWANALEDGENAGQFGGHLREDLHEHIRSFY

Query:  FICTSFHMLGISPDLSSSLLTLKDEAKRWENALEDREVGTWDQLIKKIMKKFFPSYVNVRRRKELMSFDGGVGLGFRENLHDAWSRLMPSEARC
                                            E+ TW ++++K M+K+FP  V+ +RR+++++F+        E   +AW+R       C
Subjt:  FICTSFHMLGISPDLSSSLLTLKDEAKRWENALEDREVGTWDQLIKKIMKKFFPSYVNVRRRKELMSFDGGVGLGFRENLHDAWSRLMPSEARC

XP_038882405.1 uncharacterized protein LOC120073674 [Benincasa hispida]5.8e-2134.09Show/hide
Query:  DENARFEIKPVMLQMIQNAGQFSGHLGEDPHEHIKSFYSICTSFHMPGISPD---LSSSPLTLKDEAKRWANALEDGENAGQFGGHLREDLHEHIRSFYF
        D+NARFEIKP+MLQMIQN GQF G  GEDPH ++ SF   C +F + G++ +   LS  P TL+DEAK+   +LE  E        L E   + I     
Subjt:  DENARFEIKPVMLQMIQNAGQFSGHLGEDPHEHIKSFYSICTSFHMPGISPD---LSSSPLTLKDEAKRWANALEDGENAGQFGGHLREDLHEHIRSFYF

Query:  ICTSFHMLGISPDLSSSLLTLKDEAKRWEN------ALEDREVGTWDQLIKKIMKKFFPSYVNVRRRKELM--SFDGGVGLGFRENLHDAWSRLMPSEAR
        I  S+     +  LS     +K +  R  N       L  R  G    L++ ++        NV +   +M  +   G  LGF +           ++  
Subjt:  ICTSFHMLGISPDLSSSLLTLKDEAKRWEN------ALEDREVGTWDQLIKKIMKKFFPSYVNVRRRKELM--SFDGGVGLGFRENLHDAWSRLMPSEAR

Query:  CRRLIKLMILDAWDAVVLTF--KNDALLQSQASSICNLEVQLGQLASDFFGRPSGSLPSNMETP
          +      L + +A +  +  KNDAL+QSQA+SI  +E+Q+GQ A+    R  GSLPSN E P
Subjt:  CRRLIKLMILDAWDAVVLTF--KNDALLQSQASSICNLEVQLGQLASDFFGRPSGSLPSNMETP

XP_038889254.1 uncharacterized protein LOC120079150 [Benincasa hispida]2.5e-1933.08Show/hide
Query:  RFEIKPVMLQMIQNAGQFSGHLGEDPHEHIKSFYSICTSFHMPGISPD---LSSSPLTLKDEAKRWANALEDGENAGQFGGHLREDLHEHIRSFYFICTS
        RFE+K VMLQM+Q A QF G  GEDPH H+K F   C SF +PGI+P+   LS  P +L+D+AK+WA++LE                             
Subjt:  RFEIKPVMLQMIQNAGQFSGHLGEDPHEHIKSFYSICTSFHMPGISPD---LSSSPLTLKDEAKRWANALEDGENAGQFGGHLREDLHEHIRSFYFICTS

Query:  FHMLGISPDLSSSLLTLKDEAKRWENALEDREVGTWDQLIKKIMKKFFPSYVNVRRRKELMSFDGGVGLGFRENLHDAWSRLMPSEARCRRLIKLMILDA
                           E   WEN     E  T+      IM K +         KE++                             R+ K  +   
Subjt:  FHMLGISPDLSSSLLTLKDEAKRWENALEDREVGTWDQLIKKIMKKFFPSYVNVRRRKELMSFDGGVGLGFRENLHDAWSRLMPSEARCRRLIKLMILDA

Query:  WDAVVLTFKNDALLQSQASSICNLEVQLGQLASDFFGRPSGSLPSNMETPNQAGGSGKEKCQAMTL
        W        NDALL+SQASSI NLE+Q+GQ+AS+   RP   LPSN ETP  +  + KE+C A+TL
Subjt:  WDAVVLTFKNDALLQSQASSICNLEVQLGQLASDFFGRPSGSLPSNMETPNQAGGSGKEKCQAMTL

XP_038889363.1 uncharacterized protein LOC120079279 [Benincasa hispida]9.3e-1934.01Show/hide
Query:  MFDENARFEIKPVMLQMIQNAGQFSGHLGEDPHEHIKSFYSICTSFHMPGISPDLSSSPLTLKDEAKRWANALEDGENAGQFGGHLREDLHEHIRSFYFI
        M +EN RF+IK VMLQM+QN GQF G  GED H H+ SF  +C++F + G++P                                      E IR + F 
Subjt:  MFDENARFEIKPVMLQMIQNAGQFSGHLGEDPHEHIKSFYSICTSFHMPGISPDLSSSPLTLKDEAKRWANALEDGENAGQFGGHLREDLHEHIRSFYFI

Query:  CTSFHMLGISPDLSSSLLTLKDEAKRWENALEDREVGTWDQLIKKIMKKFFPSYVNVRRRKELMSFDGGVGLGFRENLHDAWSRLMPSEARCRRLIK
                          TL+DEA  W ++LE  E+ +WDQL++  MKKFFP  VN RRRK++++F+        E L   W  L       RRL+K
Subjt:  CTSFHMLGISPDLSSSLLTLKDEAKRWENALEDREVGTWDQLIKKIMKKFFPSYVNVRRRKELMSFDGGVGLGFRENLHDAWSRLMPSEARCRRLIK

XP_038889363.1 uncharacterized protein LOC120079279 [Benincasa hispida]4.5e-0556.6Show/hide
Query:  KNDALLQSQASSICNLEVQLGQLASDFFGRPSGSLPSNMETPNQAGGSGKEKC
        KND ++QSQ SSI NLE+Q+GQLA++   R  G+LPSN E P   G  GKE+C
Subjt:  KNDALLQSQASSICNLEVQLGQLASDFFGRPSGSLPSNMETPNQAGGSGKEKC

XP_038889363.1 uncharacterized protein LOC120079279 [Benincasa hispida]6.7e-1733.85Show/hide
Query:  DENARFEIKPVMLQMIQNAGQFSGHLGEDPHEHIKSFYSICTSFHMPGISPDLSSSPLTLKDEAKRWANALEDGENAGQFGGHLREDLHEHIRSFYFICT
        +ENARFEIKPVM+QMIQN  QF     E+PH H+  F  +C++F +PGI+P                                        IR + F   
Subjt:  DENARFEIKPVMLQMIQNAGQFSGHLGEDPHEHIKSFYSICTSFHMPGISPDLSSSPLTLKDEAKRWANALEDGENAGQFGGHLREDLHEHIRSFYFICT

Query:  SFHMLGISPDLSSSLLTLKDEAKRWENALEDREVGTWDQLIKKIMKKFFPSYVNVRRRKELMSFDGGVGLGFRENLHDAWSRLMPSEARCRRLIK
                        TL+D+AKRW ++LE  E+ + DQL++  MKKFFP  +N RRRK +++F+        E L  AW        R RRL+K
Subjt:  SFHMLGISPDLSSSLLTLKDEAKRWENALEDREVGTWDQLIKKIMKKFFPSYVNVRRRKELMSFDGGVGLGFRENLHDAWSRLMPSEARCRRLIK

TrEMBL top hitse value%identityAlignment
A0A061EW79 Retrotrans_gag domain-containing protein7.5e-1430.71Show/hide
Query:  FEIKPVMLQMIQNAGQFSGHLGEDPHEHIKSFYSICTSFHMPGISPD---LSSSPLTLKDEAKRWANALEDGENAGQFGGHLREDLHEHIRSFYF--ICT
        FEIKP ++QMIQ   QF G   +DP+ HI +F  IC +F   G++ D   L   P +L+D+AK W+N+L           +  +DL +   + +F    T
Subjt:  FEIKPVMLQMIQNAGQFSGHLGEDPHEHIKSFYSICTSFHMPGISPD---LSSSPLTLKDEAKRWANALEDGENAGQFGGHLREDLHEHIRSFYF--ICT

Query:  SFHMLGISPDLSSSL---LTLKDEAKRWENALEDREVGTWDQLIKKIMKKFFPSYVNVRRRKELMSFDGGV---GLGFRENLHDAWSRLMPSE-------
        +     +   +S S+     L +E +          +GT     +KI        +N     +L SF   +    +   +N    WS             
Subjt:  SFHMLGISPDLSSSL---LTLKDEAKRWENALEDREVGTWDQLIKKIMKKFFPSYVNVRRRKELMSFDGGV---GLGFRENLHDAWSRLMPSE-------

Query:  ARCRRLIKLMILDAWDAVVLTFKNDALLQSQASSICNLEVQLGQLASDFFGRPSGSLPSNMETPNQAGGSGKEKCQAMTL
        +R   L K   ++      +T K +A +Q+QA+SI NLE+Q+GQLAS    RP G LPS+ E PN     GKE C A+TL
Subjt:  ARCRRLIKLMILDAWDAVVLTFKNDALLQSQASSICNLEVQLGQLASDFFGRPSGSLPSNMETPNQAGGSGKEKCQAMTL

A0A392MI20 Retrotrans_gag domain-containing protein6.3e-1329.57Show/hide
Query:  RFEIKPVMLQMIQNAGQFSGHLGEDPHEHIKSFYSICTSFHMPGISPDLSSSPLTLKDEAKRWANALEDGENAGQFGGHLREDLHEHIRSFYFICTSFHM
        +FE KP+M QM+Q  GQFSG   EDPH H++ F  + ++F  PGI+            EA R                         +R F +       
Subjt:  RFEIKPVMLQMIQNAGQFSGHLGEDPHEHIKSFYSICTSFHMPGISPDLSSSPLTLKDEAKRWANALEDGENAGQFGGHLREDLHEHIRSFYFICTSFHM

Query:  LGISPDLSSSLLTLKDEAKRWENALEDREVGTWDQLIKKIMKKFFPSYVNVRRRKELMSFDGGVGLGFRENLHDAWSRLMPSEARC
                    +L+D AK W N+LE   + TW+ L +K + K FP   N R R E++SF         E+L++AW R      +C
Subjt:  LGISPDLSSSLLTLKDEAKRWENALEDREVGTWDQLIKKIMKKFFPSYVNVRRRKELMSFDGGVGLGFRENLHDAWSRLMPSEARC

A0A5A7TGS2 Uncharacterized protein3.3e-1478.95Show/hide
Query:  NDALLQSQASSICNLEVQLGQLASDFFGRPSGSLPSNMETPNQAGGSGKEKCQAMTL
        NDALLQSQASSI NLE+QLGQL S+   RP GSLPSN ETPNQ GGSGKEKCQ +TL
Subjt:  NDALLQSQASSICNLEVQLGQLASDFFGRPSGSLPSNMETPNQAGGSGKEKCQAMTL

A0A5A7TRN6 Retrotrans_gag domain-containing protein4.8e-1343.24Show/hide
Query:  ENAGQFGGHLREDLHEHIRSFYFICTSFHMLGISPD---LSSSLLTLKDEAKRWENALEDREVGTWDQLIKKIMKKFFPSYVNVRRRKELMSFDGGVGLG
        +NAGQF  +  ED + +I+SFY I +SFH+  I+ +   L+    TLKD+ + W +A+E RE+  WDQLI K M+KFFP   NVRRR + M+F+      
Subjt:  ENAGQFGGHLREDLHEHIRSFYFICTSFHMLGISPD---LSSSLLTLKDEAKRWENALEDREVGTWDQLIKKIMKKFFPSYVNVRRRKELMSFDGGVGLG

Query:  FRENLHDAWSR
          + L  AW R
Subjt:  FRENLHDAWSR

A0A5D3BVN1 Putative disease resistance RPP13-like protein 18.8e-1576.92Show/hide
Query:  MFDENARFEIKPVMLQMIQNAGQFSGHLGEDPHEHIKSFYSICTSFHMPGIS
        +F ENA FE+KPVMLQMIQ AGQF G+ GEDPHEHIKSFYSIC SFHM   S
Subjt:  MFDENARFEIKPVMLQMIQNAGQFSGHLGEDPHEHIKSFYSICTSFHMPGIS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCGACGAGAATGCAAGATTTGAGATCAAGCCTGTCATGCTGCAGATGATTCAGAACGCCGGACAGTTTAGCGGTCATCTTGGGGAGGATCCACACGAACATATCAA
GAGTTTCTATTCTATTTGCACTTCCTTCCATATGCCTGGCATATCGCCTGATTTGTCCTCTTCCCCGTTAACTCTGAAGGACGAGGCGAAGAGATGGGCGAATGCCTTGG
AAGATGGGGAGAACGCTGGACAGTTTGGCGGTCATCTTAGGGAGGATCTACACGAACATATCAGGAGTTTCTATTTTATTTGCACTTCCTTCCATATGCTTGGCATATCG
CCTGATTTGTCCTCTTCCCTGTTAACTCTGAAAGACGAGGCGAAGAGATGGGAGAATGCCTTGGAAGATAGGGAGGTTGGGACTTGGGACCAACTAATCAAAAAAATCAT
GAAGAAGTTCTTTCCATCTTATGTGAACGTAAGAAGAAGGAAGGAGCTCATGAGTTTTGATGGTGGAGTAGGTTTAGGGTTTAGGGAGAACTTACACGACGCGTGGAGTA
GGTTAATGCCGTCGGAAGCTCGGTGCAGGCGGTTAATCAAATTGATGATTTTGGATGCGTGGGATGCGGTGGTCCTTACATTCAAGAATGATGCTCTTCTGCAAAGTCAA
GCTTCATCAATCTGCAATCTGGAGGTACAGTTGGGGCAACTGGCTAGCGATTTCTTTGGAAGGCCATCAGGATCACTCCCTAGCAATATGGAAACACCTAATCAGGCGGG
AGGATCTGGAAAAGAGAAGTGTCAAGCTATGACACTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTCGACGAGAATGCAAGATTTGAGATCAAGCCTGTCATGCTGCAGATGATTCAGAACGCCGGACAGTTTAGCGGTCATCTTGGGGAGGATCCACACGAACATATCAA
GAGTTTCTATTCTATTTGCACTTCCTTCCATATGCCTGGCATATCGCCTGATTTGTCCTCTTCCCCGTTAACTCTGAAGGACGAGGCGAAGAGATGGGCGAATGCCTTGG
AAGATGGGGAGAACGCTGGACAGTTTGGCGGTCATCTTAGGGAGGATCTACACGAACATATCAGGAGTTTCTATTTTATTTGCACTTCCTTCCATATGCTTGGCATATCG
CCTGATTTGTCCTCTTCCCTGTTAACTCTGAAAGACGAGGCGAAGAGATGGGAGAATGCCTTGGAAGATAGGGAGGTTGGGACTTGGGACCAACTAATCAAAAAAATCAT
GAAGAAGTTCTTTCCATCTTATGTGAACGTAAGAAGAAGGAAGGAGCTCATGAGTTTTGATGGTGGAGTAGGTTTAGGGTTTAGGGAGAACTTACACGACGCGTGGAGTA
GGTTAATGCCGTCGGAAGCTCGGTGCAGGCGGTTAATCAAATTGATGATTTTGGATGCGTGGGATGCGGTGGTCCTTACATTCAAGAATGATGCTCTTCTGCAAAGTCAA
GCTTCATCAATCTGCAATCTGGAGGTACAGTTGGGGCAACTGGCTAGCGATTTCTTTGGAAGGCCATCAGGATCACTCCCTAGCAATATGGAAACACCTAATCAGGCGGG
AGGATCTGGAAAAGAGAAGTGTCAAGCTATGACACTGTGA
Protein sequenceShow/hide protein sequence
MFDENARFEIKPVMLQMIQNAGQFSGHLGEDPHEHIKSFYSICTSFHMPGISPDLSSSPLTLKDEAKRWANALEDGENAGQFGGHLREDLHEHIRSFYFICTSFHMLGIS
PDLSSSLLTLKDEAKRWENALEDREVGTWDQLIKKIMKKFFPSYVNVRRRKELMSFDGGVGLGFRENLHDAWSRLMPSEARCRRLIKLMILDAWDAVVLTFKNDALLQSQ
ASSICNLEVQLGQLASDFFGRPSGSLPSNMETPNQAGGSGKEKCQAMTL