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PI0024737 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0024737
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr03:17688757..17690228
RNA-Seq ExpressionPI0024737
SyntenyPI0024737
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]9.8e-6768.21Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLVEEADVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKGLATNTI
        MLNMTTLLTSFVQG  +KV KCGVC LVGHPNDKCP ++E+ +++RKYDP+ NTYN+GWRDNPNLRWGNDNQ+ +QA  +S+NQGTNLED++K LATNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLVEEADVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKGLATNTI

Query:  SFQNEMKQQMSHLTNAISKLEGKGKLPGQPDHANVSAISLRSGKILETPSSKE-KVTSTPIILENKDEKKEEKLETSSLPSSSSKELHEEFDELP
        SFQ EMKQQM+ LT AISK++GKGKLP QPD+ANVSAISLRSGKIL+TP++KE KVTS  + L +K+E KEEK+ET+  PS+S  +     D  P
Subjt:  SFQNEMKQQMSHLTNAISKLEGKGKLPGQPDHANVSAISLRSGKILETPSSKE-KVTSTPIILENKDEKKEEKLETSSLPSSSSKELHEEFDELP

KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]9.8e-6766.67Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLVEEADVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKGLATNTI
        MLNMTTLLTSFVQG  +KV KCGVCGLVGHPNDKCP ++E+ +++RKYDPH NTYN+GWRDNPNLRWGNDNQ+ +QA S+S+NQGTNLED++K LATNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLVEEADVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKGLATNTI

Query:  SFQNEMKQQMSHLTNAISKLEGKGKLPGQPDHANVSAISLRSGKILETPSSKE-KVTSTPIILENKDEKKEEKLETSSLPSSSSKELHEEFDELPINN
        SFQ EMKQQM+ LT AISK++GKGKL  Q ++ANVSA+SLRSGKIL+TP++KE K TS P+ L  K+E KEEK+ET+  P +S        D+ P+N+
Subjt:  SFQNEMKQQMSHLTNAISKLEGKGKLPGQPDHANVSAISLRSGKILETPSSKE-KVTSTPIILENKDEKKEEKLETSSLPSSSSKELHEEFDELPINN

KAA0067359.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.4e-6768.34Show/hide
Query:  MLNM-TTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLVEEADVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKGLATNT
        MLNM TTLLTSFVQG  +KV KCGVCGLVGH N+KCP ++E+ +++R+YDPHSNTYN+GWRDNPNLRWGNDNQ+ +QA S+S+NQGTNLED++K LATNT
Subjt:  MLNM-TTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLVEEADVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKGLATNT

Query:  ISFQNEMKQQMSHLTNAISKLEGKGKLPGQPDHANVSAISLRSGKILETPSSKE-KVTSTPIILENKDEKKEEKLETSSLPSSSSKELHEEFDELPINN
        +SFQ EMKQQM+ LT AISK++GKGKLP Q DHANVSAISLRSGKIL+TP++KE KVTS P+ L +K+E KEEK+ET+  PS+S        D+ P+N+
Subjt:  ISFQNEMKQQMSHLTNAISKLEGKGKLPGQPDHANVSAISLRSGKILETPSSKE-KVTSTPIILENKDEKKEEKLETSSLPSSSSKELHEEFDELPINN

TYK07549.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.3e-6672.73Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLVEEADVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKGLATNTI
        MLNMTTLLTSFVQG   KV KCGVCGLVGHPNDKCP ++E+ +++R+YDPHSNTYN+GWRDN NLRWGNDNQ+ +QA S+S+NQGTNLED++K LATNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLVEEADVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKGLATNTI

Query:  SFQNEMKQQMSHLTNAISKLEGKGKLPGQPDHANVSAISLRSGKILETPSSKE-KVTSTPIILENKDEKKEEKLET
        SFQ +MKQQM+ LT AISK++GKGKLP QPDHANVSAISLRSGKIL+TP++KE K+TS P+ L +K+E KEEK+++
Subjt:  SFQNEMKQQMSHLTNAISKLEGKGKLPGQPDHANVSAISLRSGKILETPSSKE-KVTSTPIILENKDEKKEEKLET

XP_008465649.1 PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo]3.7e-6667.17Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLVEEADVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKGLATNTI
        MLNMTTLLTSFVQG ++KV KCGVCGLVG+PNDKCP ++E+ +++R+YDPH NTYN GWRDNPNLRWGNDNQ+ +QA  +S+NQGTNLED++K LATNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLVEEADVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKGLATNTI

Query:  SFQNEMKQQMSHLTNAISKLEGKGKLPGQPDHANVSAISLRSGKILETPSSKE-KVTSTPIILENKDEKKEEKLETSSLPSSSSKELHEEFDELPINN
        SFQ +MKQQM+ LT  ISK++GKGKLP QPDH NVSAISLRSGKIL+TP++KE KVTS  + L +K++ KEEK+ET+S  SS+SK      D+ P+N+
Subjt:  SFQNEMKQQMSHLTNAISKLEGKGKLPGQPDHANVSAISLRSGKILETPSSKE-KVTSTPIILENKDEKKEEKLETSSLPSSSSKELHEEFDELPINN

TrEMBL top hitse value%identityAlignment
A0A1S3CQU8 uncharacterized protein LOC1035032911.8e-6667.17Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLVEEADVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKGLATNTI
        MLNMTTLLTSFVQG ++KV KCGVCGLVG+PNDKCP ++E+ +++R+YDPH NTYN GWRDNPNLRWGNDNQ+ +QA  +S+NQGTNLED++K LATNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLVEEADVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKGLATNTI

Query:  SFQNEMKQQMSHLTNAISKLEGKGKLPGQPDHANVSAISLRSGKILETPSSKE-KVTSTPIILENKDEKKEEKLETSSLPSSSSKELHEEFDELPINN
        SFQ +MKQQM+ LT  ISK++GKGKLP QPDH NVSAISLRSGKIL+TP++KE KVTS  + L +K++ KEEK+ET+S  SS+SK      D+ P+N+
Subjt:  SFQNEMKQQMSHLTNAISKLEGKGKLPGQPDHANVSAISLRSGKILETPSSKE-KVTSTPIILENKDEKKEEKLETSSLPSSSSKELHEEFDELPINN

A0A5A7VQ60 Retrotransposon gag protein1.6e-6768.34Show/hide
Query:  MLNM-TTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLVEEADVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKGLATNT
        MLNM TTLLTSFVQG  +KV KCGVCGLVGH N+KCP ++E+ +++R+YDPHSNTYN+GWRDNPNLRWGNDNQ+ +QA S+S+NQGTNLED++K LATNT
Subjt:  MLNM-TTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLVEEADVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKGLATNT

Query:  ISFQNEMKQQMSHLTNAISKLEGKGKLPGQPDHANVSAISLRSGKILETPSSKE-KVTSTPIILENKDEKKEEKLETSSLPSSSSKELHEEFDELPINN
        +SFQ EMKQQM+ LT AISK++GKGKLP Q DHANVSAISLRSGKIL+TP++KE KVTS P+ L +K+E KEEK+ET+  PS+S        D+ P+N+
Subjt:  ISFQNEMKQQMSHLTNAISKLEGKGKLPGQPDHANVSAISLRSGKILETPSSKE-KVTSTPIILENKDEKKEEKLETSSLPSSSSKELHEEFDELPINN

A0A5D3CB46 Retrotransposon gag protein6.2e-6772.73Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLVEEADVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKGLATNTI
        MLNMTTLLTSFVQG   KV KCGVCGLVGHPNDKCP ++E+ +++R+YDPHSNTYN+GWRDN NLRWGNDNQ+ +QA S+S+NQGTNLED++K LATNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLVEEADVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKGLATNTI

Query:  SFQNEMKQQMSHLTNAISKLEGKGKLPGQPDHANVSAISLRSGKILETPSSKE-KVTSTPIILENKDEKKEEKLET
        SFQ +MKQQM+ LT AISK++GKGKLP QPDHANVSAISLRSGKIL+TP++KE K+TS P+ L +K+E KEEK+++
Subjt:  SFQNEMKQQMSHLTNAISKLEGKGKLPGQPDHANVSAISLRSGKILETPSSKE-KVTSTPIILENKDEKKEEKLET

A0A5D3CRR8 Retrotransposon gag protein4.8e-6766.67Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLVEEADVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKGLATNTI
        MLNMTTLLTSFVQG  +KV KCGVCGLVGHPNDKCP ++E+ +++RKYDPH NTYN+GWRDNPNLRWGNDNQ+ +QA S+S+NQGTNLED++K LATNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLVEEADVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKGLATNTI

Query:  SFQNEMKQQMSHLTNAISKLEGKGKLPGQPDHANVSAISLRSGKILETPSSKE-KVTSTPIILENKDEKKEEKLETSSLPSSSSKELHEEFDELPINN
        SFQ EMKQQM+ LT AISK++GKGKL  Q ++ANVSA+SLRSGKIL+TP++KE K TS P+ L  K+E KEEK+ET+  P +S        D+ P+N+
Subjt:  SFQNEMKQQMSHLTNAISKLEGKGKLPGQPDHANVSAISLRSGKILETPSSKE-KVTSTPIILENKDEKKEEKLETSSLPSSSSKELHEEFDELPINN

E5GBZ4 Retrotransposon gag protein4.8e-6768.21Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLVEEADVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKGLATNTI
        MLNMTTLLTSFVQG  +KV KCGVC LVGHPNDKCP ++E+ +++RKYDP+ NTYN+GWRDNPNLRWGNDNQ+ +QA  +S+NQGTNLED++K LATNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLVEEADVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKGLATNTI

Query:  SFQNEMKQQMSHLTNAISKLEGKGKLPGQPDHANVSAISLRSGKILETPSSKE-KVTSTPIILENKDEKKEEKLETSSLPSSSSKELHEEFDELP
        SFQ EMKQQM+ LT AISK++GKGKLP QPD+ANVSAISLRSGKIL+TP++KE KVTS  + L +K+E KEEK+ET+  PS+S  +     D  P
Subjt:  SFQNEMKQQMSHLTNAISKLEGKGKLPGQPDHANVSAISLRSGKILETPSSKE-KVTSTPIILENKDEKKEEKLETSSLPSSSSKELHEEFDELP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTAATATGACTACTTTACTAACTTCCTTTGTGCAAGGTGGATCTGTTAAAGTTGCAAAGTGCGGGGTGTGCGGTCTAGTCGGACATCCTAATGACAAGTGCCCTAA
CTTAGTAGAAGAGGCAGATGTCATTAGGAAGTACGATCCTCATAGCAACACTTACAACGCCGGTTGGAGAGACAACCCTAATCTAAGATGGGGAAACGACAACCAAAGAC
CCTCGCAAGCAACCTCCTCTTCAAACAATCAAGGTACAAATTTGGAAGATTTAGTTAAAGGTCTTGCTACTAATACTATCTCTTTTCAGAATGAAATGAAACAACAAATG
TCTCATCTAACCAATGCCATAAGTAAATTAGAAGGTAAAGGCAAACTTCCGGGTCAGCCTGATCATGCCAACGTAAGTGCCATCTCACTTAGAAGCGGTAAGATTCTGGA
AACCCCTTCAAGTAAAGAAAAGGTAACTTCTACCCCTATCATTCTAGAAAATAAAGATGAGAAAAAGGAAGAAAAATTAGAAACTAGTTCTTTACCATCATCTTCTTCAA
AAGAATTGCATGAAGAATTTGATGAATTGCCTATTAATAATGAATTTGCTAAACAAGAGTTAGATGAAATTGATGATGATATTTGTTTGCATGAATTTGGAACAAGGAAT
TGA
mRNA sequenceShow/hide mRNA sequence
ATGCTTAATATGACTACTTTACTAACTTCCTTTGTGCAAGGTGGATCTGTTAAAGTTGCAAAGTGCGGGGTGTGCGGTCTAGTCGGACATCCTAATGACAAGTGCCCTAA
CTTAGTAGAAGAGGCAGATGTCATTAGGAAGTACGATCCTCATAGCAACACTTACAACGCCGGTTGGAGAGACAACCCTAATCTAAGATGGGGAAACGACAACCAAAGAC
CCTCGCAAGCAACCTCCTCTTCAAACAATCAAGGTACAAATTTGGAAGATTTAGTTAAAGGTCTTGCTACTAATACTATCTCTTTTCAGAATGAAATGAAACAACAAATG
TCTCATCTAACCAATGCCATAAGTAAATTAGAAGGTAAAGGCAAACTTCCGGGTCAGCCTGATCATGCCAACGTAAGTGCCATCTCACTTAGAAGCGGTAAGATTCTGGA
AACCCCTTCAAGTAAAGAAAAGGTAACTTCTACCCCTATCATTCTAGAAAATAAAGATGAGAAAAAGGAAGAAAAATTAGAAACTAGTTCTTTACCATCATCTTCTTCAA
AAGAATTGCATGAAGAATTTGATGAATTGCCTATTAATAATGAATTTGCTAAACAAGAGTTAGATGAAATTGATGATGATATTTGTTTGCATGAATTTGGAACAAGGAAT
TGA
Protein sequenceShow/hide protein sequence
MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLVEEADVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKGLATNTISFQNEMKQQM
SHLTNAISKLEGKGKLPGQPDHANVSAISLRSGKILETPSSKEKVTSTPIILENKDEKKEEKLETSSLPSSSSKELHEEFDELPINNEFAKQELDEIDDDICLHEFGTRN