CuGenDBv2

Gene ID	PI0024760
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Beta-galactosidase
Genome location	chr12:18431149..18431412
RNA-Seq Expression	PI0024760
Synteny	PI0024760
Gene Ontology terms	GO:0000723 - telomere maintenance (biological process) GO:0032508 - DNA duplex unwinding (biological process) GO:0016310 - phosphorylation (biological process) GO:0015074 - DNA integration (biological process) GO:0006116 - NADH oxidation (biological process) GO:0006303 - double-strand break repair via nonhomologous end joining (biological process) GO:0006310 - DNA recombination (biological process) GO:0043564 - Ku70:Ku80 complex (cellular component) GO:0005525 - GTP binding (molecular function) GO:0016301 - kinase activity (molecular function) GO:0005524 - ATP binding (molecular function) GO:0016787 - hydrolase activity (molecular function) GO:0003954 - NADH dehydrogenase activity (molecular function) GO:0042162 - telomeric DNA binding (molecular function) GO:0003684 - damaged DNA binding (molecular function) GO:0003678 - DNA helicase activity (molecular function)
InterPro domains	IPR029472 - Retrotransposon Copia-like, N-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0034386.1 Beta-galactosidase [Cucumis melo var. makuwa]

2.8e-33

86.9

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Query:  STGNFSGEKLNGQNFFSWSQSIKMFLEGRQQFGFLTGEIPRPPPGNDQERLWRAEDSFIRSMLINSMESQIGKPLLYAATAKDL
        STGNFSGEKLNGQN+FSWSQSIKMFLEGR QFGFLTGEI RPPPG+  ERLW+ EDS IRSMLINSME QIGKPLLYA TAKDL
Subjt:  STGNFSGEKLNGQNFFSWSQSIKMFLEGRQQFGFLTGEIPRPPPGNDQERLWRAEDSFIRSMLINSMESQIGKPLLYAATAKDL

TYJ97256.1 Beta-galactosidase [Cucumis melo var. makuwa]

2.8e-33

86.9

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Query:  STGNFSGEKLNGQNFFSWSQSIKMFLEGRQQFGFLTGEIPRPPPGNDQERLWRAEDSFIRSMLINSMESQIGKPLLYAATAKDL
        STGNFSGEKLNGQN+FSWSQSIKMFLEGR QFGFLTGEI RPPPG+  ERLW+ EDS IRSMLINSME QIGKPLLYA TAKDL
Subjt:  STGNFSGEKLNGQNFFSWSQSIKMFLEGRQQFGFLTGEIPRPPPGNDQERLWRAEDSFIRSMLINSMESQIGKPLLYAATAKDL

TYJ99952.1 Beta-galactosidase [Cucumis melo var. makuwa]

2.8e-33

86.9

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Query:  STGNFSGEKLNGQNFFSWSQSIKMFLEGRQQFGFLTGEIPRPPPGNDQERLWRAEDSFIRSMLINSMESQIGKPLLYAATAKDL
        STGNFSGEKLNGQN+FSWSQSIKMFLEGR QFGFLTGEI RPPPG+  ERLW+ EDS IRSMLINSME QIGKPLLYA TAKDL
Subjt:  STGNFSGEKLNGQNFFSWSQSIKMFLEGRQQFGFLTGEIPRPPPGNDQERLWRAEDSFIRSMLINSMESQIGKPLLYAATAKDL

TYK08054.1 Beta-galactosidase [Cucumis melo var. makuwa]

2.8e-33

86.9

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Query:  STGNFSGEKLNGQNFFSWSQSIKMFLEGRQQFGFLTGEIPRPPPGNDQERLWRAEDSFIRSMLINSMESQIGKPLLYAATAKDL
        STGNFSGEKLNGQN+FSWSQSIKMFLEGR QFGFLTGEI RPPPG+  ERLW+ EDS IRSMLINSME QIGKPLLYA TAKDL
Subjt:  STGNFSGEKLNGQNFFSWSQSIKMFLEGRQQFGFLTGEIPRPPPGNDQERLWRAEDSFIRSMLINSMESQIGKPLLYAATAKDL

TYK16957.1 ATP-dependent DNA helicase 2 subunit KU70 [Cucumis melo var. makuwa]

2.8e-33

86.9

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Query:  STGNFSGEKLNGQNFFSWSQSIKMFLEGRQQFGFLTGEIPRPPPGNDQERLWRAEDSFIRSMLINSMESQIGKPLLYAATAKDL
        STGNFSGEKLNGQN+FSWSQSIKMFLEGR QFGFLTGEI RPPPG+  ERLW+ EDS IRSMLINSME QIGKPLLYA TAKDL
Subjt:  STGNFSGEKLNGQNFFSWSQSIKMFLEGRQQFGFLTGEIPRPPPGNDQERLWRAEDSFIRSMLINSMESQIGKPLLYAATAKDL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SM64 Beta-galactosidase

1.4e-33

86.9

Show/hide

Query:  STGNFSGEKLNGQNFFSWSQSIKMFLEGRQQFGFLTGEIPRPPPGNDQERLWRAEDSFIRSMLINSMESQIGKPLLYAATAKDL
        STGNFSGEKLNGQN+FSWSQSIKMFLEGR QFGFLTGEI RPPPG+  ERLW+ EDS IRSMLINSME QIGKPLLYA TAKDL
Subjt:  STGNFSGEKLNGQNFFSWSQSIKMFLEGRQQFGFLTGEIPRPPPGNDQERLWRAEDSFIRSMLINSMESQIGKPLLYAATAKDL

A0A5A7UGB2 Beta-galactosidase

1.4e-33

86.9

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Query:  STGNFSGEKLNGQNFFSWSQSIKMFLEGRQQFGFLTGEIPRPPPGNDQERLWRAEDSFIRSMLINSMESQIGKPLLYAATAKDL
        STGNFSGEKLNGQN+FSWSQSIKMFLEGR QFGFLTGEI RPPPG+  ERLW+ EDS IRSMLINSME QIGKPLLYA TAKDL
Subjt:  STGNFSGEKLNGQNFFSWSQSIKMFLEGRQQFGFLTGEIPRPPPGNDQERLWRAEDSFIRSMLINSMESQIGKPLLYAATAKDL

A0A5A7V0Y9 Beta-galactosidase

1.4e-33

86.9

Show/hide

Query:  STGNFSGEKLNGQNFFSWSQSIKMFLEGRQQFGFLTGEIPRPPPGNDQERLWRAEDSFIRSMLINSMESQIGKPLLYAATAKDL
        STGNFSGEKLNGQN+FSWSQSIKMFLEGR QFGFLTGEI RPPPG+  ERLW+ EDS IRSMLINSME QIGKPLLYA TAKDL
Subjt:  STGNFSGEKLNGQNFFSWSQSIKMFLEGRQQFGFLTGEIPRPPPGNDQERLWRAEDSFIRSMLINSMESQIGKPLLYAATAKDL

A0A5D3BJK7 Beta-galactosidase

1.4e-33

86.9

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Query:  STGNFSGEKLNGQNFFSWSQSIKMFLEGRQQFGFLTGEIPRPPPGNDQERLWRAEDSFIRSMLINSMESQIGKPLLYAATAKDL
        STGNFSGEKLNGQN+FSWSQSIKMFLEGR QFGFLTGEI RPPPG+  ERLW+ EDS IRSMLINSME QIGKPLLYA TAKDL
Subjt:  STGNFSGEKLNGQNFFSWSQSIKMFLEGRQQFGFLTGEIPRPPPGNDQERLWRAEDSFIRSMLINSMESQIGKPLLYAATAKDL

A0A5D3C4T4 Beta-galactosidase

1.4e-33

86.9

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Query:  STGNFSGEKLNGQNFFSWSQSIKMFLEGRQQFGFLTGEIPRPPPGNDQERLWRAEDSFIRSMLINSMESQIGKPLLYAATAKDL
        STGNFSGEKLNGQN+FSWSQSIKMFLEGR QFGFLTGEI RPPPG+  ERLW+ EDS IRSMLINSME QIGKPLLYA TAKDL
Subjt:  STGNFSGEKLNGQNFFSWSQSIKMFLEGRQQFGFLTGEIPRPPPGNDQERLWRAEDSFIRSMLINSMESQIGKPLLYAATAKDL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G21280.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

1.8e-06

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Query:  NFSGEKL--NGQNFFSWSQSIKMFLEGRQQFGFLTGEIPRPPPGNDQERLWRAEDSFIRSMLINSMESQIGKPLLYAATA
        +FS +KL  +  N+ +W    + FL   ++FGF+ G +P+P P +   + W   ++ +   L+NSM  ++ + ++YA TA
Subjt:  NFSGEKL--NGQNFFSWSQSIKMFLEGRQQFGFLTGEIPRPPPGNDQERLWRAEDSFIRSMLINSMESQIGKPLLYAATA

Sequences

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CDS sequence

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ATGGTTCCCTCCACAGGTAATTTTTCAGGAGAAAAATTGAATGGCCAGAATTTTTTCTCTTGGTCCCAGTCGATCAAGATGTTTCTTGAGGGACGCCAACAATTTGGGTT
TCTGACTGGTGAGATTCCCCGTCCTCCACCTGGCAATGATCAAGAACGCCTTTGGAGAGCAGAGGACTCCTTTATTCGGTCCATGCTAATCAATAGTATGGAATCTCAAA
TAGGCAAGCCGCTCTTATATGCTGCTACAGCAAAGGATCTCTAG

mRNA sequence

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Protein sequence

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MVPSTGNFSGEKLNGQNFFSWSQSIKMFLEGRQQFGFLTGEIPRPPPGNDQERLWRAEDSFIRSMLINSMESQIGKPLLYAATAKDL

PI0024760 (gene) of Melon (PI 482460) v1 genome