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PI0024763 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0024763
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReplication protein A 14 kDa subunit B-like
Genome locationchr10:21048675..21051139
RNA-Seq ExpressionPI0024763
SyntenyPI0024763
Gene Ontology termsGO:0006260 - DNA replication (biological process)
GO:0006281 - DNA repair (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0031981 - nuclear lumen (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold
IPR013970 - Replication factor A protein 3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601223.1 Replication protein A 14 kDa subunit B, partial [Cucurbita argyrosperma subsp. sororia]1.1e-4484.91Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSAGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEHWTDFGTTFDTESYNQLCRLANGE
        MDTSNPAVF NGELL+MH GRKIRAVVQVIQS GG+VTGKSTDEQ LT+HGLPTVP MNFVEVVGIAE NK I VEHWTDFG TFD +SYNQLC+LANGE
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSAGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEHWTDFGTTFDTESYNQLCRLANGE

Query:  FRSLFI
        FRSLF+
Subjt:  FRSLFI

XP_004135037.1 replication protein A 14 kDa subunit B [Cucumis sativus]1.4e-5096.23Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSAGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEHWTDFGTTFDTESYNQLCRLANGE
        MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQS GGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVE WTDFGTTFDT SYNQLC+LANGE
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSAGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEHWTDFGTTFDTESYNQLCRLANGE

Query:  FRSLFI
        FRSLFI
Subjt:  FRSLFI

XP_008446755.1 PREDICTED: replication protein A 14 kDa subunit B-like [Cucumis melo]2.1e-5196.23Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSAGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEHWTDFGTTFDTESYNQLCRLANGE
        MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQS GGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIA+SNKTI VEHWTDFGTTFDTESYNQLC+LANGE
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSAGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEHWTDFGTTFDTESYNQLCRLANGE

Query:  FRSLFI
        FRSLFI
Subjt:  FRSLFI

XP_023539791.1 replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo]1.1e-4484.91Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSAGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEHWTDFGTTFDTESYNQLCRLANGE
        MDTSNPAVF NGELL++H GRKIRAVVQVIQS GG+VTGKSTDEQ LT+HGLPTVP MNFVEVVGIAE NK I VEHWTDFGTTFD +SYNQLC+LANGE
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSAGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEHWTDFGTTFDTESYNQLCRLANGE

Query:  FRSLFI
        FRSLF+
Subjt:  FRSLFI

XP_038893019.1 replication protein A 14 kDa subunit B-like [Benincasa hispida]3.8e-4892.45Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSAGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEHWTDFGTTFDTESYNQLCRLANGE
        MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQS GGIVTGKSTDEQQLTI GLPTVP MNFVEVVGIAE+NK I VEHWTDFGTTFDT+SYNQLC+LANGE
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSAGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEHWTDFGTTFDTESYNQLCRLANGE

Query:  FRSLFI
        FRSLFI
Subjt:  FRSLFI

TrEMBL top hitse value%identityAlignment
A0A0A0KRF2 Uncharacterized protein6.7e-5196.23Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSAGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEHWTDFGTTFDTESYNQLCRLANGE
        MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQS GGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVE WTDFGTTFDT SYNQLC+LANGE
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSAGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEHWTDFGTTFDTESYNQLCRLANGE

Query:  FRSLFI
        FRSLFI
Subjt:  FRSLFI

A0A1S3BGM8 replication protein A 14 kDa subunit B-like1.0e-5196.23Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSAGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEHWTDFGTTFDTESYNQLCRLANGE
        MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQS GGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIA+SNKTI VEHWTDFGTTFDTESYNQLC+LANGE
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSAGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEHWTDFGTTFDTESYNQLCRLANGE

Query:  FRSLFI
        FRSLFI
Subjt:  FRSLFI

A0A5A7SU42 Replication protein A 14 kDa subunit B-like1.0e-5196.23Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSAGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEHWTDFGTTFDTESYNQLCRLANGE
        MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQS GGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIA+SNKTI VEHWTDFGTTFDTESYNQLC+LANGE
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSAGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEHWTDFGTTFDTESYNQLCRLANGE

Query:  FRSLFI
        FRSLFI
Subjt:  FRSLFI

A0A6J1D9X1 replication protein A 14 kDa subunit B-like1.8e-4077.36Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSAGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEHWTDFGTTFDTESYNQLCRLANGE
        MDTSNPAVFVN ELL +H GRKIRAV QV +S GG+VTGKSTDEQ+LT+HGLP VP MNFVEV+GIAESNK I VEH TDFG TFD +SYNQLC+LANGE
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSAGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEHWTDFGTTFDTESYNQLCRLANGE

Query:  FRSLFI
        F+S+F+
Subjt:  FRSLFI

A0A6J1JC99 replication protein A 14 kDa subunit B-like4.6e-4483.96Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSAGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEHWTDFGTTFDTESYNQLCRLANGE
        MDTSNPAVF NGELL+MH GRKIRAVVQVIQS  G+VTGKSTDEQ LT+HGLPTVP MNFVEVVGIAE NK I VEHWTDFGT FD +SYNQLC+LANGE
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSAGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEHWTDFGTTFDTESYNQLCRLANGE

Query:  FRSLFI
        FRSLF+
Subjt:  FRSLFI

SwissProt top hitse value%identityAlignment
Q6NLG7 Replication protein A 14 kDa subunit B2.0e-3158.49Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSAGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEHWTDFGTTFDTESYNQLCRLANGE
        MDTS+PA FVNG LL  + G+K+RAV+QVI+S  G V GKSTD+QQ+ + G P  P   ++EV+GIAE++ TI+ E WT+FG +FD ++YN+LC+LANGE
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSAGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEHWTDFGTTFDTESYNQLCRLANGE

Query:  FRSLFI
        FR LFI
Subjt:  FRSLFI

Q9LXK1 Replication protein A 14 kDa subunit A4.5e-2855.14Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSAGGIVTGKSTDEQQLTIHG-LPTVPHMNFVEVVGIAESNKTIKVEHWTDFGTTFDTESYNQLCRLANG
        MDTS+P+ FVNG LL    G+K+R V+QV  S  G V GKSTD+ Q+ + G  P  P   ++EV+GIAES+  I+ E WT+FG TFDT++YN+LC+LANG
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSAGGIVTGKSTDEQQLTIHG-LPTVPHMNFVEVVGIAESNKTIKVEHWTDFGTTFDTESYNQLCRLANG

Query:  EFRSLFI
        EF+ LFI
Subjt:  EFRSLFI

Q9SDK9 Replication protein A 14 kDa subunit1.9e-2651.89Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSAGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEHWTDFGTTFDTESYNQLCRLANGE
        MDTS PA FVNGE+L M  GR++R VVQ  +  GG++ G+STD  QLTI G    P  ++VE++GIAE N+ I+ E  TDFG  FD   +N LC+LANG+
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSAGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEHWTDFGTTFDTESYNQLCRLANGE

Query:  FRSLFI
         + LF+
Subjt:  FRSLFI

Arabidopsis top hitse value%identityAlignment
AT3G52630.1 Nucleic acid-binding, OB-fold-like protein3.2e-2955.14Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSAGGIVTGKSTDEQQLTIHG-LPTVPHMNFVEVVGIAESNKTIKVEHWTDFGTTFDTESYNQLCRLANG
        MDTS+P+ FVNG LL    G+K+R V+QV  S  G V GKSTD+ Q+ + G  P  P   ++EV+GIAES+  I+ E WT+FG TFDT++YN+LC+LANG
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSAGGIVTGKSTDEQQLTIHG-LPTVPHMNFVEVVGIAESNKTIKVEHWTDFGTTFDTESYNQLCRLANG

Query:  EFRSLFI
        EF+ LFI
Subjt:  EFRSLFI

AT3G52630.2 Nucleic acid-binding, OB-fold-like protein3.2e-2955.14Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSAGGIVTGKSTDEQQLTIHG-LPTVPHMNFVEVVGIAESNKTIKVEHWTDFGTTFDTESYNQLCRLANG
        MDTS+P+ FVNG LL    G+K+R V+QV  S  G V GKSTD+ Q+ + G  P  P   ++EV+GIAES+  I+ E WT+FG TFDT++YN+LC+LANG
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSAGGIVTGKSTDEQQLTIHG-LPTVPHMNFVEVVGIAESNKTIKVEHWTDFGTTFDTESYNQLCRLANG

Query:  EFRSLFI
        EF+ LFI
Subjt:  EFRSLFI

AT4G18590.1 Nucleic acid-binding, OB-fold-like protein1.4e-3258.49Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSAGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEHWTDFGTTFDTESYNQLCRLANGE
        MDTS+PA FVNG LL  + G+K+RAV+QVI+S  G V GKSTD+QQ+ + G P  P   ++EV+GIAE++ TI+ E WT+FG +FD ++YN+LC+LANGE
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSAGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEHWTDFGTTFDTESYNQLCRLANGE

Query:  FRSLFI
        FR LFI
Subjt:  FRSLFI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATACGTCAAACCCTGCAGTTTTTGTTAATGGTGAGTTATTGAGCATGCATTGTGGAAGAAAGATTCGAGCAGTGGTTCAAGTTATCCAAAGCGCTGGTGGAATCGT
TACGGGAAAATCTACGGATGAACAACAATTGACTATTCATGGCTTGCCCACAGTCCCTCACATGAACTTTGTAGAGGTAGTTGGTATTGCTGAGAGCAACAAGACCATCA
AGGTTGAACACTGGACCGACTTTGGAACCACTTTTGATACTGAATCTTACAATCAGCTATGCCGACTTGCAAATGGGGAATTCAGAAGTTTATTTATTTAG
mRNA sequenceShow/hide mRNA sequence
TGGAAATAGCCTAAATGATAAAGATCAGTAAATAAATCTTGATATTGGAAAAAAGAAGAGCAAGGAAAATGGAATAAATGACAAAATTTCGGCTTTTAACCTCGTTCCCG
CCAAAGTATCTCCTTGGTCAAGAACCGGCCATAAATTCCCGCCTCTTCTTAGTTCGTCACTTGAACTTCTCGATCTCTATCCGAATTCTCTCTCTCTCTCTCTCTGTCCC
TCTCTTTGAATCGTGCTCGGAAGAATCATAGTCTCACAGGATATGGATACGTCAAACCCTGCAGTTTTTGTTAATGGTGAGTTATTGAGCATGCATTGTGGAAGAAAGAT
TCGAGCAGTGGTTCAAGTTATCCAAAGCGCTGGTGGAATCGTTACGGGAAAATCTACGGATGAACAACAATTGACTATTCATGGCTTGCCCACAGTCCCTCACATGAACT
TTGTAGAGGTAGTTGGTATTGCTGAGAGCAACAAGACCATCAAGGTTGAACACTGGACCGACTTTGGAACCACTTTTGATACTGAATCTTACAATCAGCTATGCCGACTT
GCAAATGGGGAATTCAGAAGTTTATTTATTTAGTGATTTGTAGGTACGGCATGAGAAGAAGCAAGAGGTATAATTTGTTATGTGATTTTGAGTCTTCTATGCTTGTAACT
CATGTGGAGTGCTGAACCACTAATCTCTTAAAAGAACTTGTGTTTTGGTATGTGTAGTGTACTAAGCTAGGAGTGAACTACAAAATTTCCATGGACTTTAGGGGTTTCAA
TTTCCCGGGTACTTTAATTCACATTTTTCACTAGAAAAAACCTTGGTGCACTTAAGCTTCATTCATCTCTTTTATAGCCCGGTTGTTATCCAATTAAAATGCGTTATCGG
TATTGTTTCTTTTATTTGTGTGGTAAATAAGAACGGAGTTAGGTTGCATCTA
Protein sequenceShow/hide protein sequence
MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSAGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEHWTDFGTTFDTESYNQLCRLANGEFRSLFI