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PI0024822 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0024822
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description40S ribosomal protein S27
Genome locationchr11:1339445..1340222
RNA-Seq ExpressionPI0024822
SyntenyPI0024822
Gene Ontology termsGO:0000028 - ribosomal small subunit assembly (biological process)
GO:0006412 - translation (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000592 - Ribosomal protein S27
IPR011332 - Zinc-binding ribosomal protein
IPR023407 - Ribosomal protein S27, zinc-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EXB94378.1 40S ribosomal protein S27-2 [Morus notabilis]1.9e-3362.12Show/hide
Query:  PRRRSSPLSSPSSHRPFSLANC--RWNFRVCDPHSSPSSI-------------------IMLEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQT
        PRRR +  S  S+ R  +  +    W      PHSSP+                       LEK+KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQT
Subjt:  PRRRSSPLSSPSSHRPFSLANC--RWNFRVCDPHSSPSSI-------------------IMLEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQT

Query:  VVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        VVVCGNCQTVLCQPTGGRA+LTEGCSFRRKGD
Subjt:  VVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

XP_008459925.1 PREDICTED: 40S ribosomal protein S27-2 [Cucumis melo]2.4e-33100Show/hide
Query:  LEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        LEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
Subjt:  LEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

XP_022869263.1 40S ribosomal protein S27-2-like [Olea europaea var. sylvestris]4.2e-3395.89Show/hide
Query:  IMLEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        + LEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRA+LTEGCSFRRKGD
Subjt:  IMLEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

XP_022953224.1 uncharacterized protein LOC111455834 [Cucurbita moschata]4.3e-4675.38Show/hide
Query:  PLLYIHPRRRSSPLSSPSSHRPFSLANCRWNFRVCDPHSSPSSIIM-------------LEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV
        PLLYI PRRRS+P+S  SS+RP SLAN RW+FRV DP      I++             LEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV
Subjt:  PLLYIHPRRRSSPLSSPSSHRPFSLANCRWNFRVCDPHSSPSSIIM-------------LEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV

Query:  VCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        VCGNCQTVLCQPTGGRA+LTEGCSFRRKGD
Subjt:  VCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

XP_022991567.1 40S ribosomal protein S27-2-like [Cucurbita maxima]2.3e-4776.92Show/hide
Query:  PLLYIHPRRRSSPLSSPSSHRPFSLANCRWNFRVCDPHSSPSSIIM-------------LEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV
        PLLYIHPRRRSSP+S  SS+RP SLAN RW+FRV DP      I++             LEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV
Subjt:  PLLYIHPRRRSSPLSSPSSHRPFSLANCRWNFRVCDPHSSPSSIIM-------------LEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV

Query:  VCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        VCGNCQTVLCQPTGGRA+LTEGCSFRRKGD
Subjt:  VCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

TrEMBL top hitse value%identityAlignment
A0A0A0K9G0 40S ribosomal protein S278.1e-5174.48Show/hide
Query:  MDGYTLCPMEGCPLLYIHPRRRSSPLSSPSSHR-PFSLANCRWNFRVCDPHSSPSSIIM---------------LEKRKHKLKRLVQSPNSFFMDVKCQG
        MDGYTLC MEGCPLLYIHPRRRSSPLSSPSSHR  F L+           H++P  +I+               LEKRKHKLKRLVQSPNSFFMDVKCQG
Subjt:  MDGYTLCPMEGCPLLYIHPRRRSSPLSSPSSHR-PFSLANCRWNFRVCDPHSSPSSIIM---------------LEKRKHKLKRLVQSPNSFFMDVKCQG

Query:  CFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        CFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
Subjt:  CFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

A0A5D3DLW4 40S ribosomal protein S271.2e-33100Show/hide
Query:  LEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        LEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
Subjt:  LEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

A0A6J1GP15 40S ribosomal protein S272.1e-4675.38Show/hide
Query:  PLLYIHPRRRSSPLSSPSSHRPFSLANCRWNFRVCDPHSSPSSIIM-------------LEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV
        PLLYI PRRRS+P+S  SS+RP SLAN RW+FRV DP      I++             LEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV
Subjt:  PLLYIHPRRRSSPLSSPSSHRPFSLANCRWNFRVCDPHSSPSSIIM-------------LEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV

Query:  VCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        VCGNCQTVLCQPTGGRA+LTEGCSFRRKGD
Subjt:  VCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

A0A6J1JM72 40S ribosomal protein S271.1e-4776.92Show/hide
Query:  PLLYIHPRRRSSPLSSPSSHRPFSLANCRWNFRVCDPHSSPSSIIM-------------LEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV
        PLLYIHPRRRSSP+S  SS+RP SLAN RW+FRV DP      I++             LEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV
Subjt:  PLLYIHPRRRSSPLSSPSSHRPFSLANCRWNFRVCDPHSSPSSIIM-------------LEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV

Query:  VCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        VCGNCQTVLCQPTGGRA+LTEGCSFRRKGD
Subjt:  VCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

W9RJV2 40S ribosomal protein S279.1e-3462.12Show/hide
Query:  PRRRSSPLSSPSSHRPFSLANC--RWNFRVCDPHSSPSSI-------------------IMLEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQT
        PRRR +  S  S+ R  +  +    W      PHSSP+                       LEK+KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQT
Subjt:  PRRRSSPLSSPSSHRPFSLANC--RWNFRVCDPHSSPSSI-------------------IMLEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQT

Query:  VVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        VVVCGNCQTVLCQPTGGRA+LTEGCSFRRKGD
Subjt:  VVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

SwissProt top hitse value%identityAlignment
O64650 40S ribosomal protein S27-19.6e-3392.75Show/hide
Query:  LEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRK
        LEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGNCQT+LC PTGG+AKLTEGCSFR+K
Subjt:  LEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRK

P47903 40S ribosomal protein S278.4e-2983.1Show/hide
Query:  LEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        LEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CG+C +VLC PTG   +LTEGCSFRRK D
Subjt:  LEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

Q8L953 40S ribosomal protein S27-34.3e-3394.2Show/hide
Query:  LEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRK
        LEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGG+A+L EGCSFR+K
Subjt:  LEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRK

Q96564 40S ribosomal protein S272.1e-3291.55Show/hide
Query:  LEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        LEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC  CQTVLCQPTGG+A+LTEGCSFRRKGD
Subjt:  LEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

Q9M2F1 40S ribosomal protein S27-29.3e-3697.18Show/hide
Query:  LEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        LEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQT+LCQPTGG+AKLTEGCSFRRKGD
Subjt:  LEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

Arabidopsis top hitse value%identityAlignment
AT2G45710.1 Zinc-binding ribosomal protein family protein6.8e-3492.75Show/hide
Query:  LEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRK
        LEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGNCQT+LC PTGG+AKLTEGCSFR+K
Subjt:  LEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRK

AT3G61110.1 ribosomal protein S276.6e-3797.18Show/hide
Query:  LEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        LEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQT+LCQPTGG+AKLTEGCSFRRKGD
Subjt:  LEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

AT3G61111.1 Zinc-binding ribosomal protein family protein4.3e-2878.87Show/hide
Query:  LEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        LEKRKHKLKRLV SPNS+FM V+C  C NITT+FSHSQTVVVCG CQ VLCQPTGG+AKLT GCSFR+  D
Subjt:  LEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

AT5G47930.1 Zinc-binding ribosomal protein family protein3.1e-3494.2Show/hide
Query:  LEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRK
        LEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGG+A+L EGCSFR+K
Subjt:  LEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGGTTATACCCTCTGCCCGATGGAAGGGTGTCCGCTCCTTTATATTCATCCTAGACGGCGCTCTTCTCCTCTTTCTTCACCTTCATCGCACCGCCCTTTTTCTCT
CGCGAACTGTCGTTGGAATTTTAGGGTTTGCGATCCACACAGTTCCCCTTCCTCGATCATCATGCTTGAGAAGAGAAAGCACAAGCTCAAGCGTCTCGTACAATCGCCCA
ACTCATTCTTCATGGACGTGAAATGCCAGGGTTGCTTTAACATAACCACTGTATTCAGTCATTCACAAACGGTTGTGGTATGTGGGAATTGCCAGACGGTCTTGTGTCAA
CCAACTGGAGGGCGAGCAAAGCTAACGGAAGGGTGCTCCTTTAGAAGAAAGGGCGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGACGGTTATACCCTCTGCCCGATGGAAGGGTGTCCGCTCCTTTATATTCATCCTAGACGGCGCTCTTCTCCTCTTTCTTCACCTTCATCGCACCGCCCTTTTTCTCT
CGCGAACTGTCGTTGGAATTTTAGGGTTTGCGATCCACACAGTTCCCCTTCCTCGATCATCATGCTTGAGAAGAGAAAGCACAAGCTCAAGCGTCTCGTACAATCGCCCA
ACTCATTCTTCATGGACGTGAAATGCCAGGGTTGCTTTAACATAACCACTGTATTCAGTCATTCACAAACGGTTGTGGTATGTGGGAATTGCCAGACGGTCTTGTGTCAA
CCAACTGGAGGGCGAGCAAAGCTAACGGAAGGGTGCTCCTTTAGAAGAAAGGGCGATTAA
Protein sequenceShow/hide protein sequence
MDGYTLCPMEGCPLLYIHPRRRSSPLSSPSSHRPFSLANCRWNFRVCDPHSSPSSIIMLEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQ
PTGGRAKLTEGCSFRRKGD