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PI0024833 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0024833
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionSplicing factor subunit
Genome locationchr06:3288350..3290860
RNA-Seq ExpressionPI0024833
SyntenyPI0024833
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005686 - U2 snRNP (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
InterPro domainsIPR009846 - Splicing factor 3B subunit 5/RDS3 complex subunit 10
IPR017089 - Splicing factor 3B, subunit 5


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ESR33493.1 hypothetical protein CICLE_v10006856mg [Citrus clementina]1.0e-4398.85Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYF+IAENESIGREHYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD

GAY60739.1 hypothetical protein CUMW_204370 [Citrus unshiu]1.0e-4398.85Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYF+IAENESIGREHYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD

XP_006489711.1 uncharacterized protein At4g14342 [Citrus sinensis]4.6e-44100Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD

XP_041007902.1 uncharacterized protein At4g14342 isoform X1 [Juglans microcarpa x Juglans regia]1.0e-4398.85Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYP+LAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD

XP_042942701.1 uncharacterized protein At4g14342-like [Carya illinoinensis]4.6e-44100Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD

TrEMBL top hitse value%identityAlignment
A0A0A0L732 Splicing factor subunit2.2e-44100Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD

A0A1S3AX72 Splicing factor subunit2.2e-44100Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD

A0A2I4DYR2 Splicing factor subunit2.2e-44100Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD

A0A5D3D0R6 Splicing factor subunit2.2e-44100Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD

V4RHN1 Uncharacterized protein5.0e-4498.85Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYF+IAENESIGREHYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD

SwissProt top hitse value%identityAlignment
P58728 Uncharacterized protein At4g143421.1e-4391.95Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASY+GHYP+L+YFAIAENESIGRE YNFMQKMLLPCGLPPERE++
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD

Q56K13 Splicing factor 3B subunit 53.5e-2659.52Show/hide
Query:  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
        +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFAIAENES  R  +N M+KML PCG P ++ ++
Subjt:  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD

Q9BWJ5 Splicing factor 3B subunit 53.5e-2659.52Show/hide
Query:  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
        +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFAIAENES  R  +N M+KML PCG P ++ ++
Subjt:  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD

Q9LW64 Uncharacterized protein At3g233251.1e-4391.95Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASY+GHYP+L+YFAIAENESIGRE YNFMQKMLLPCGLPPERED+
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD

Q9VHI4 Splicing factor 3B subunit 58.2e-2865.06Show/hide
Query:  DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
        +R+NI+SQLEHLQ+KY+GTGHAD  +FEW  N  RDS ASY+GHY IL YFAIAENES  R  +N M++ML PCG PPE+ +D
Subjt:  DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD

Arabidopsis top hitse value%identityAlignment
AT3G23325.1 Splicing factor 3B subunit 5/RDS3 complex subunit 107.6e-4591.95Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASY+GHYP+L+YFAIAENESIGRE YNFMQKMLLPCGLPPERED+
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD

AT4G14342.1 Splicing factor 3B subunit 5/RDS3 complex subunit 107.6e-4591.95Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASY+GHYP+L+YFAIAENESIGRE YNFMQKMLLPCGLPPERE++
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGGCCAGTGATAGATTCAACATCAATTCCCAGCTTGAGCACCTGCAGGCTAAATATGTGGGAACTGGGCATGCCGACTTAAATAGATTTGAATGGGCCGTGAACAT
TCAGCGCGATAGCTATGCATCATATGTTGGACATTACCCCATTCTAGCTTACTTCGCTATAGCAGAAAATGAATCCATCGGAAGGGAACACTACAATTTTATGCAGAAAA
TGCTGTTACCTTGCGGCCTTCCTCCAGAAAGGGAAGATGATTGA
mRNA sequenceShow/hide mRNA sequence
AATACCGGTTAAGTAAAAAACGTAGAATTTTGACGGTGTCATATGTGACCTTGCTCGTTCCGTAGTGAATTTAAGAATTGGATCGCGCCATTTTTTCTGCTCCTATCGGT
TCTTCCCCAATTCGAATATGCAGGCCAGTGATAGATTCAACATCAATTCCCAGCTTGAGCACCTGCAGGCTAAATATGTGGGAACTGGGCATGCCGACTTAAATAGATTT
GAATGGGCCGTGAACATTCAGCGCGATAGCTATGCATCATATGTTGGACATTACCCCATTCTAGCTTACTTCGCTATAGCAGAAAATGAATCCATCGGAAGGGAACACTA
CAATTTTATGCAGAAAATGCTGTTACCTTGCGGCCTTCCTCCAGAAAGGGAAGATGATTGAGATTTGAGATGTTATGAGGTCGTATTTAGAGTTGTAACACTCTGGATCG
TTATGTGGGCTCAAAAAACATTTTCTTTTGTTACATAACTCTGCTACGAAGTGTCTAATGGGAAATGCGAACTATTTTATCTTGTAATGCTTCTGTCTGATGAAGAATCA
GTTTCCAACTAATCTACAGGACTCTCTACTGTAATCTATCATTCTCATCTTTTATTTCAAGTAAAAGGTCCATTTCGGTCATAGTCTGGAAAACCCTTCCATTTGTTGAT
GTATAATTCTGCTTGACCTTGAATTAAGTGTTTTTGTTTTTGTTTTTTTGTCGACAAGAACACGAATTTAATTTGATAGCTATGGATGCTGGATTTGGTTCAGTCAGTTA
ATTATTATTCCAAGTCGGTTTCACATTTTCAGGAATTAATCTATAGCTACTGAGATTACTTGTAACAGGACCACAATGGAATTATGTGATACGTCTCTTGCTAATTAATA
CGAGTGGGCTCTC
Protein sequenceShow/hide protein sequence
MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD