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PI0024847 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0024847
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr01:14965130..14965606
RNA-Seq ExpressionPI0024847
SyntenyPI0024847
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026071.1 uncharacterized protein E6C27_scaffold581G00620 [Cucumis melo var. makuwa]1.6e-5574.68Show/hide
Query:  FKYHHRCEKVYLTHLTFADDLMIFCYADTDSIGFVRETLRQFGELSGLIANLDKSSMFVAGVDIEAATVLADSMRFALGTLPVRYLGVPLLSGRLRASDC
        F++HHRCEKV LTHLTFADDLMIFC AD  SI F+R+ L++FGELSGL AN  KSS+FVAGV+ E A+ LA  M FA G LPVRYLG+PLL+GRLR++DC
Subjt:  FKYHHRCEKVYLTHLTFADDLMIFCYADTDSIGFVRETLRQFGELSGLIANLDKSSMFVAGVDIEAATVLADSMRFALGTLPVRYLGVPLLSGRLRASDC

Query:  APLIQRITSRIRSWSARVLSFVGRLQLVRSVLRSFQVFWSSVFVLPAEVHHAVD
        APLIQRITS+IRSW+ARVLSF GRLQLVRSVLRS QV+W+SVFVLPA VH+ VD
Subjt:  APLIQRITSRIRSWSARVLSFVGRLQLVRSVLRSFQVFWSSVFVLPAEVHHAVD
KAA0059752.1 F17F8.5 [Cucumis melo var. makuwa]4.0e-5473.38Show/hide
Query:  FKYHHRCEKVYLTHLTFADDLMIFCYADTDSIGFVRETLRQFGELSGLIANLDKSSMFVAGVDIEAATVLADSMRFALGTLPVRYLGVPLLSGRLRASDC
        F++HHRCEKV LT+LTFADDLMIFC AD  SI F+RE L++FGELSGL AN  KSS+FVAGV+ E A+ LA  M F  G LP+RYLG+PLL+GRLR++D 
Subjt:  FKYHHRCEKVYLTHLTFADDLMIFCYADTDSIGFVRETLRQFGELSGLIANLDKSSMFVAGVDIEAATVLADSMRFALGTLPVRYLGVPLLSGRLRASDC

Query:  APLIQRITSRIRSWSARVLSFVGRLQLVRSVLRSFQVFWSSVFVLPAEVHHAVD
        APLIQRITSRIRSW+ARVLSF GRLQLVR VLRS QV+W+SVFVLPA VHH VD
Subjt:  APLIQRITSRIRSWSARVLSFVGRLQLVRSVLRSFQVFWSSVFVLPAEVHHAVD
KAA0062333.1 putative reverse transcriptase [Cucumis melo var. makuwa]4.3e-5674.68Show/hide
Query:  FKYHHRCEKVYLTHLTFADDLMIFCYADTDSIGFVRETLRQFGELSGLIANLDKSSMFVAGVDIEAATVLADSMRFALGTLPVRYLGVPLLSGRLRASDC
        F +HHRCE V L HLTFADDLMIFC AD  S+ F+RE L++FGELSGL  NL K+SMFVAGV+ E A+ LA SM F LG LPVRYLG+PLLSGRLR+SDC
Subjt:  FKYHHRCEKVYLTHLTFADDLMIFCYADTDSIGFVRETLRQFGELSGLIANLDKSSMFVAGVDIEAATVLADSMRFALGTLPVRYLGVPLLSGRLRASDC

Query:  APLIQRITSRIRSWSARVLSFVGRLQLVRSVLRSFQVFWSSVFVLPAEVHHAVD
        APLIQRITSRIRSW ARV SF GRLQL+R VLRS QVFW+SVFVLPA VH+ VD
Subjt:  APLIQRITSRIRSWSARVLSFVGRLQLVRSVLRSFQVFWSSVFVLPAEVHHAVD
KAA0065355.1 F17F8.5 [Cucumis melo var. makuwa]2.4e-5473.38Show/hide
Query:  FKYHHRCEKVYLTHLTFADDLMIFCYADTDSIGFVRETLRQFGELSGLIANLDKSSMFVAGVDIEAATVLADSMRFALGTLPVRYLGVPLLSGRLRASDC
        F++H RCEKV L HLTFADDLMIFC AD  S+ F+RE L++FGELSGL  NL KSS+FVA V  EAA+ LA SM F  G LPVRYLG+PLL GRLR++DC
Subjt:  FKYHHRCEKVYLTHLTFADDLMIFCYADTDSIGFVRETLRQFGELSGLIANLDKSSMFVAGVDIEAATVLADSMRFALGTLPVRYLGVPLLSGRLRASDC

Query:  APLIQRITSRIRSWSARVLSFVGRLQLVRSVLRSFQVFWSSVFVLPAEVHHAVD
        APLIQR+TSRIRSW+A+VLSFVGRLQLVRSVLRS QV+W SVFVLPA VH+ VD
Subjt:  APLIQRITSRIRSWSARVLSFVGRLQLVRSVLRSFQVFWSSVFVLPAEVHHAVD
TYK28099.1 uncharacterized protein E5676_scaffold1467G00020 [Cucumis melo var. makuwa]1.6e-5574.68Show/hide
Query:  FKYHHRCEKVYLTHLTFADDLMIFCYADTDSIGFVRETLRQFGELSGLIANLDKSSMFVAGVDIEAATVLADSMRFALGTLPVRYLGVPLLSGRLRASDC
        F++HHRCEKV LTHLTFADDLMIFC AD  SI F+R+ L++FGELSGL AN  KSS+FVAGV+ E A+ LA  M FA G LPVRYLG+PLL+GRLR++DC
Subjt:  FKYHHRCEKVYLTHLTFADDLMIFCYADTDSIGFVRETLRQFGELSGLIANLDKSSMFVAGVDIEAATVLADSMRFALGTLPVRYLGVPLLSGRLRASDC

Query:  APLIQRITSRIRSWSARVLSFVGRLQLVRSVLRSFQVFWSSVFVLPAEVHHAVD
        APLIQRITS+IRSW+ARVLSF GRLQLVRSVLRS QV+W+SVFVLPA VH+ VD
Subjt:  APLIQRITSRIRSWSARVLSFVGRLQLVRSVLRSFQVFWSSVFVLPAEVHHAVD
TrEMBL top hitse value%identityAlignment
A0A5A7SPE5 Reverse transcriptase domain-containing protein7.9e-5674.68Show/hide
Query:  FKYHHRCEKVYLTHLTFADDLMIFCYADTDSIGFVRETLRQFGELSGLIANLDKSSMFVAGVDIEAATVLADSMRFALGTLPVRYLGVPLLSGRLRASDC
        F++HHRCEKV LTHLTFADDLMIFC AD  SI F+R+ L++FGELSGL AN  KSS+FVAGV+ E A+ LA  M FA G LPVRYLG+PLL+GRLR++DC
Subjt:  FKYHHRCEKVYLTHLTFADDLMIFCYADTDSIGFVRETLRQFGELSGLIANLDKSSMFVAGVDIEAATVLADSMRFALGTLPVRYLGVPLLSGRLRASDC

Query:  APLIQRITSRIRSWSARVLSFVGRLQLVRSVLRSFQVFWSSVFVLPAEVHHAVD
        APLIQRITS+IRSW+ARVLSF GRLQLVRSVLRS QV+W+SVFVLPA VH+ VD
Subjt:  APLIQRITSRIRSWSARVLSFVGRLQLVRSVLRSFQVFWSSVFVLPAEVHHAVD
A0A5A7UV01 F17F8.51.9e-5473.38Show/hide
Query:  FKYHHRCEKVYLTHLTFADDLMIFCYADTDSIGFVRETLRQFGELSGLIANLDKSSMFVAGVDIEAATVLADSMRFALGTLPVRYLGVPLLSGRLRASDC
        F++HHRCEKV LT+LTFADDLMIFC AD  SI F+RE L++FGELSGL AN  KSS+FVAGV+ E A+ LA  M F  G LP+RYLG+PLL+GRLR++D 
Subjt:  FKYHHRCEKVYLTHLTFADDLMIFCYADTDSIGFVRETLRQFGELSGLIANLDKSSMFVAGVDIEAATVLADSMRFALGTLPVRYLGVPLLSGRLRASDC

Query:  APLIQRITSRIRSWSARVLSFVGRLQLVRSVLRSFQVFWSSVFVLPAEVHHAVD
        APLIQRITSRIRSW+ARVLSF GRLQLVR VLRS QV+W+SVFVLPA VHH VD
Subjt:  APLIQRITSRIRSWSARVLSFVGRLQLVRSVLRSFQVFWSSVFVLPAEVHHAVD
A0A5A7V2L9 Putative reverse transcriptase2.1e-5674.68Show/hide
Query:  FKYHHRCEKVYLTHLTFADDLMIFCYADTDSIGFVRETLRQFGELSGLIANLDKSSMFVAGVDIEAATVLADSMRFALGTLPVRYLGVPLLSGRLRASDC
        F +HHRCE V L HLTFADDLMIFC AD  S+ F+RE L++FGELSGL  NL K+SMFVAGV+ E A+ LA SM F LG LPVRYLG+PLLSGRLR+SDC
Subjt:  FKYHHRCEKVYLTHLTFADDLMIFCYADTDSIGFVRETLRQFGELSGLIANLDKSSMFVAGVDIEAATVLADSMRFALGTLPVRYLGVPLLSGRLRASDC

Query:  APLIQRITSRIRSWSARVLSFVGRLQLVRSVLRSFQVFWSSVFVLPAEVHHAVD
        APLIQRITSRIRSW ARV SF GRLQL+R VLRS QVFW+SVFVLPA VH+ VD
Subjt:  APLIQRITSRIRSWSARVLSFVGRLQLVRSVLRSFQVFWSSVFVLPAEVHHAVD
A0A5A7VHU9 F17F8.51.1e-5473.38Show/hide
Query:  FKYHHRCEKVYLTHLTFADDLMIFCYADTDSIGFVRETLRQFGELSGLIANLDKSSMFVAGVDIEAATVLADSMRFALGTLPVRYLGVPLLSGRLRASDC
        F++H RCEKV L HLTFADDLMIFC AD  S+ F+RE L++FGELSGL  NL KSS+FVA V  EAA+ LA SM F  G LPVRYLG+PLL GRLR++DC
Subjt:  FKYHHRCEKVYLTHLTFADDLMIFCYADTDSIGFVRETLRQFGELSGLIANLDKSSMFVAGVDIEAATVLADSMRFALGTLPVRYLGVPLLSGRLRASDC

Query:  APLIQRITSRIRSWSARVLSFVGRLQLVRSVLRSFQVFWSSVFVLPAEVHHAVD
        APLIQR+TSRIRSW+A+VLSFVGRLQLVRSVLRS QV+W SVFVLPA VH+ VD
Subjt:  APLIQRITSRIRSWSARVLSFVGRLQLVRSVLRSFQVFWSSVFVLPAEVHHAVD
A0A5D3DXE4 Reverse transcriptase domain-containing protein7.9e-5674.68Show/hide
Query:  FKYHHRCEKVYLTHLTFADDLMIFCYADTDSIGFVRETLRQFGELSGLIANLDKSSMFVAGVDIEAATVLADSMRFALGTLPVRYLGVPLLSGRLRASDC
        F++HHRCEKV LTHLTFADDLMIFC AD  SI F+R+ L++FGELSGL AN  KSS+FVAGV+ E A+ LA  M FA G LPVRYLG+PLL+GRLR++DC
Subjt:  FKYHHRCEKVYLTHLTFADDLMIFCYADTDSIGFVRETLRQFGELSGLIANLDKSSMFVAGVDIEAATVLADSMRFALGTLPVRYLGVPLLSGRLRASDC

Query:  APLIQRITSRIRSWSARVLSFVGRLQLVRSVLRSFQVFWSSVFVLPAEVHHAVD
        APLIQRITS+IRSW+ARVLSF GRLQLVRSVLRS QV+W+SVFVLPA VH+ VD
Subjt:  APLIQRITSRIRSWSARVLSFVGRLQLVRSVLRSFQVFWSSVFVLPAEVHHAVD
SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657501.4e-0432.84Show/hide
Query:  VPLLSGRLRASDCAPLIQRITSRIRSWSARVLSFVGRLQLVRSVLRSFQVFWSSVFVLPAEVHHAVD
        +P+L  R+       +++R++SR+  W  + LSF GRL L ++VL S  V   S  +LP  + + +D
Subjt:  VPLLSGRLRASDCAPLIQRITSRIRSWSARVLSFVGRLQLVRSVLRSFQVFWSSVFVLPAEVHHAVD
Arabidopsis top hitse value%identityAlignment
AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.1e-1747.42Show/hide
Query:  VAGVDIEAATVLADSMRFALGTLPVRYLGVPLLSGRLRASDCAPLIQRITSRIRSWSARVLSFVGRLQLVRSVLRSFQVFWSSVFVLPAEVHHAVDS
        +AGV       +  S  FA G LPVRYLG+PLL+ ++  SD  PL+++I  RI  W+AR LSF GRLQL+ SV+ S   FW S F LP+     +DS
Subjt:  VAGVDIEAATVLADSMRFALGTLPVRYLGVPLLSGRLRASDCAPLIQRITSRIRSWSARVLSFVGRLQLVRSVLRSFQVFWSSVFVLPAEVHHAVDS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTTCAAGTATCATCATCGTTGTGAGAAGGTTTATTTGACGCATCTGACCTTCGCTGATGATCTTATGATTTTTTGTTATGCGGACACCGATTCCATTGGCTTTGT
GCGTGAGACTCTTCGTCAGTTTGGGGAGTTATCGGGGTTAATTGCAAATCTGGATAAGAGCTCTATGTTTGTGGCAGGGGTTGACATTGAGGCTGCTACTGTGTTGGCTG
ATAGTATGAGGTTTGCACTGGGTACTTTACCTGTTCGTTACCTGGGTGTTCCCTTACTCTCTGGTCGTCTGCGTGCTTCGGATTGTGCTCCACTCATCCAGCGTATTACT
AGTCGGATTCGGTCTTGGTCAGCTAGAGTTTTATCCTTCGTTGGTAGGCTTCAGCTTGTGCGTTCAGTGTTGCGGAGTTTTCAGGTCTTTTGGAGCAGTGTGTTTGTGTT
GCCGGCTGAGGTGCATCATGCGGTTGATAGTTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATTTCAAGTATCATCATCGTTGTGAGAAGGTTTATTTGACGCATCTGACCTTCGCTGATGATCTTATGATTTTTTGTTATGCGGACACCGATTCCATTGGCTTTGT
GCGTGAGACTCTTCGTCAGTTTGGGGAGTTATCGGGGTTAATTGCAAATCTGGATAAGAGCTCTATGTTTGTGGCAGGGGTTGACATTGAGGCTGCTACTGTGTTGGCTG
ATAGTATGAGGTTTGCACTGGGTACTTTACCTGTTCGTTACCTGGGTGTTCCCTTACTCTCTGGTCGTCTGCGTGCTTCGGATTGTGCTCCACTCATCCAGCGTATTACT
AGTCGGATTCGGTCTTGGTCAGCTAGAGTTTTATCCTTCGTTGGTAGGCTTCAGCTTGTGCGTTCAGTGTTGCGGAGTTTTCAGGTCTTTTGGAGCAGTGTGTTTGTGTT
GCCGGCTGAGGTGCATCATGCGGTTGATAGTTTTTGA
Protein sequenceShow/hide protein sequence
MDFKYHHRCEKVYLTHLTFADDLMIFCYADTDSIGFVRETLRQFGELSGLIANLDKSSMFVAGVDIEAATVLADSMRFALGTLPVRYLGVPLLSGRLRASDCAPLIQRIT
SRIRSWSARVLSFVGRLQLVRSVLRSFQVFWSSVFVLPAEVHHAVDSF