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PI0024863 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0024863
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase
Genome locationchr07:21683153..21683827
RNA-Seq ExpressionPI0024863
SyntenyPI0024863
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056581.1 reverse transcriptase [Cucumis melo var. makuwa]8.8e-4753.14Show/hide
Query:  MAGRRRNNPASGDDREQEEAEEIVALSSKTSTIRLLAIEESLGELHDKFDRLLENFEVLDRRMDGIPALQHIETEVVNDCNCDDRRGRRARGNYKNLHNQ
        MAG+R   PA+ D+REQ+EAEEI  LS +TST+ LLA+E+SLG+LHDKFD+++++ E L++RMDG+ A   IE  VVND N  ++ GR+AR N++NL NQ
Subjt:  MAGRRRNNPASGDDREQEEAEEIVALSSKTSTIRLLAIEESLGELHDKFDRLLENFEVLDRRMDGIPALQHIETEVVNDCNCDDRRGRRARGNYKNLHNQ

Query:  RHARRGRINYDPLQLFKENAQEEPWQEIQDDDSTSSDEQRNQWNLDGEVRMDRNNRRNDIRRESHHDYKMKIDLPTYNGKRDIESFSDWIKNTENFFNYM
        ++ R  R N  PL                       DEQ N WN +G+ +M +  R  + RRE HHDYKMKIDLP +NGKRDI SF DWIK+TENFFNYM
Subjt:  RHARRGRINYDPLQLFKENAQEEPWQEIQDDDSTSSDEQRNQWNLDGEVRMDRNNRRNDIRRESHHDYKMKIDLPTYNGKRDIESFSDWIKNTENFFNYM

Query:  DTPERKK
        DTP RKK
Subjt:  DTPERKK

KAA0057344.1 RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa]5.7e-5454.26Show/hide
Query:  MAGRRRNNPASGDDREQEEAEEIVALSSKTSTIRLLAIEESLGELHDKFDRLLENFEVLDRRMDGIPALQHIETEVVNDCNCDDRRGRRARGNYKNLHNQ
        MA RR   PA+GD+REQEE E I  LS +TST+RLLA+++ LG+LH+KF+R+++N E L +RMDG+PA   IE  +  D N  +R GRRA+ N+ N+ NQ
Subjt:  MAGRRRNNPASGDDREQEEAEEIVALSSKTSTIRLLAIEESLGELHDKFDRLLENFEVLDRRMDGIPALQHIETEVVNDCNCDDRRGRRARGNYKNLHNQ

Query:  RHARRGRINYDPLQLFKENAQE--EPWQEIQDDDSTSSDEQRNQWNLDGEVRMDRNNRRNDIRRESHHDYKMKIDLPTYNGKRDIESFSDWIKNTENFFN
        R+ +  R    PL+   +++ E  + WQ  Q+ DS+S DE+ N W+ +G+++M +  R ++ RRE HHDYKMK+DLPTYNGK DIESF D IKNTENFF 
Subjt:  RHARRGRINYDPLQLFKENAQE--EPWQEIQDDDSTSSDEQRNQWNLDGEVRMDRNNRRNDIRRESHHDYKMKIDLPTYNGKRDIESFSDWIKNTENFFN

Query:  YMDTPERKKMHLVALKLRAGASA
        YMDTP+RKK+HL+ALKLR G SA
Subjt:  YMDTPERKKMHLVALKLRAGASA

TYK11204.1 reverse transcriptase [Cucumis melo var. makuwa]6.1e-6459.73Show/hide
Query:  MAGRRRNNPASGDDREQEEAEEIVALSSKTSTIRLLAIEESLGELHDKFDRLLENFEVLDRRMDGIPALQHIETEVVNDCNCDDRRGRRARGNYKNLHNQ
        MAGRR   PA+GD+REQEE EE  ALS +TST+  LA+E+SLG+LH+KFDR+++  E L RRMDG+PAL  IE    ND N  +R GRRAR N++NL NQ
Subjt:  MAGRRRNNPASGDDREQEEAEEIVALSSKTSTIRLLAIEESLGELHDKFDRLLENFEVLDRRMDGIPALQHIETEVVNDCNCDDRRGRRARGNYKNLHNQ

Query:  RHARRGRINYDPLQLFKENAQE--EPWQEIQDDDSTSSDEQRNQWNLDGEVRMDRNNRRNDIRRESHHDYKMKIDLPTYNGKRDIESFSDWIKNTENFFN
        R+ +R R   +PL+    ++ E  E WQ  Q+ DS+SSDEQ N WN + +++M +  R ++ +RE HHDYKMKIDLPTY GK D+ESF DWI+NTENFFN
Subjt:  RHARRGRINYDPLQLFKENAQE--EPWQEIQDDDSTSSDEQRNQWNLDGEVRMDRNNRRNDIRRESHHDYKMKIDLPTYNGKRDIESFSDWIKNTENFFN

Query:  YMDTPERKKMHLVALKLRAGASAWWD
        YMDT +RKK+HLVALKLR GASAWWD
Subjt:  YMDTPERKKMHLVALKLRAGASAWWD

XP_031741035.1 uncharacterized protein LOC116403692 [Cucumis sativus]3.2e-6561.5Show/hide
Query:  MAGRRRNNPASGDDREQEEAEEIVALSSKTSTIRLLAIEESLGELHDKFDRLLENFEVLDRRMDGIPALQHIETEVVNDCNCDDRRGRRARGNYKNLHNQ
        MAGRR NNPA+G++R QE AEEI  LS KTST+RLLA+EESLG+LH+KFDRL+E+ E+L+RR +        E    ND    + RGRRARG  +N++N 
Subjt:  MAGRRRNNPASGDDREQEEAEEIVALSSKTSTIRLLAIEESLGELHDKFDRLLENFEVLDRRMDGIPALQHIETEVVNDCNCDDRRGRRARGNYKNLHNQ

Query:  RHARRGRINYDPLQLFKENAQE--EPWQEIQDDDSTSSDEQRNQWNLDGEVRMDRNNRRNDIRRESHHDYKMKIDLPTYNGKRDIESFSDWIKNTENFFN
        R  +R R  Y   Q   E+ QE  E WQE Q+DDS+S DEQ N WN + E R  RNN+R + RR  +HDYKMKIDLP Y+GKR+IE+F DWIK+TENFFN
Subjt:  RHARRGRINYDPLQLFKENAQE--EPWQEIQDDDSTSSDEQRNQWNLDGEVRMDRNNRRNDIRRESHHDYKMKIDLPTYNGKRDIESFSDWIKNTENFFN

Query:  YMDTPERKKMHLVALKLRAGASAWWD
        YMDTPERKK+HLVALKLRAGASAWWD
Subjt:  YMDTPERKKMHLVALKLRAGASAWWD

XP_031743026.1 uncharacterized protein LOC116404533 [Cucumis sativus]7.9e-6460.62Show/hide
Query:  MAGRRRNNPASGDDREQEEAEEIVALSSKTSTIRLLAIEESLGELHDKFDRLLENFEVLDRRMDGIPALQHIETEVVNDCNCDDRRGRRARGNYKNLHNQ
        MAGRR NNPA+G++R QE  EEI  LS KTST+RLLA+EESLG+LH+KFD+L+E+ E+L+RR +        E    ND    + RGRRARG  +N++N 
Subjt:  MAGRRRNNPASGDDREQEEAEEIVALSSKTSTIRLLAIEESLGELHDKFDRLLENFEVLDRRMDGIPALQHIETEVVNDCNCDDRRGRRARGNYKNLHNQ

Query:  RHARRGRINYDPLQLFKENAQE--EPWQEIQDDDSTSSDEQRNQWNLDGEVRMDRNNRRNDIRRESHHDYKMKIDLPTYNGKRDIESFSDWIKNTENFFN
        R  +R R  Y   Q   E+ QE  E WQE Q+DDS+S DEQ N WN + E R  RNNRR + RR  +HDYKMKIDLP Y GKR+IE+F DWIK+TENFF 
Subjt:  RHARRGRINYDPLQLFKENAQE--EPWQEIQDDDSTSSDEQRNQWNLDGEVRMDRNNRRNDIRRESHHDYKMKIDLPTYNGKRDIESFSDWIKNTENFFN

Query:  YMDTPERKKMHLVALKLRAGASAWWD
        YMDTPERKK+HLVALKLRAGASAWWD
Subjt:  YMDTPERKKMHLVALKLRAGASAWWD

TrEMBL top hitse value%identityAlignment
A0A5A7SLA2 Zf-CCHC domain-containing protein2.8e-4672.34Show/hide
Query:  MAGRRRNNPASGDDREQEEAEEIVALSSKTSTIRLLAIEESLGELHDKFDRLLENFEVLDRRMDGIPALQHIETEVVNDCNCDDRRGRRARGNYKNLHNQ
        MAGRRRNNPA+ DDREQEEAE+I AL  KTST+RLL ++ESLG+LH+KF+RLLENFE+L+RRMDG+ A   IE EVVN  NCDDR GRRARGNY+NLHNQ
Subjt:  MAGRRRNNPASGDDREQEEAEEIVALSSKTSTIRLLAIEESLGELHDKFDRLLENFEVLDRRMDGIPALQHIETEVVNDCNCDDRRGRRARGNYKNLHNQ

Query:  RHARRGRINYDPLQLFKENAQE--EPWQEIQDDDSTSSDEQ
        +HARR R +YDP Q F+E+AQE  EPWQEIQDD+  SS+EQ
Subjt:  RHARRGRINYDPLQLFKENAQE--EPWQEIQDDDSTSSDEQ

A0A5A7SXB6 Reverse transcriptase3.6e-3864.58Show/hide
Query:  NCDDRRGRRARGNYKNLHNQRHARRGRINYDPLQLFKENAQE--EPWQEIQDDDSTSSDEQRNQWNLDGEVRMDRNNRRNDIRRESHHDYKMKIDLPTYN
        N ++R GRRAR NYKN  NQR     R    PLQ   +N+QE  E WQ  QD DS+  DEQ N WN DGE RM +  R  + RRE++HDYKMKIDLPTYN
Subjt:  NCDDRRGRRARGNYKNLHNQRHARRGRINYDPLQLFKENAQE--EPWQEIQDDDSTSSDEQRNQWNLDGEVRMDRNNRRNDIRRESHHDYKMKIDLPTYN

Query:  GKRDIESFSDWIKNTENFFNYMDTPERKKMHLVALKLRAGASAW
        GKRDIESF DWIKNTENFF YM TP+RKK+HLVALKL+ GASAW
Subjt:  GKRDIESFSDWIKNTENFFNYMDTPERKKMHLVALKLRAGASAW

A0A5A7UQ86 RNA-directed DNA polymerase-like protein2.8e-5454.26Show/hide
Query:  MAGRRRNNPASGDDREQEEAEEIVALSSKTSTIRLLAIEESLGELHDKFDRLLENFEVLDRRMDGIPALQHIETEVVNDCNCDDRRGRRARGNYKNLHNQ
        MA RR   PA+GD+REQEE E I  LS +TST+RLLA+++ LG+LH+KF+R+++N E L +RMDG+PA   IE  +  D N  +R GRRA+ N+ N+ NQ
Subjt:  MAGRRRNNPASGDDREQEEAEEIVALSSKTSTIRLLAIEESLGELHDKFDRLLENFEVLDRRMDGIPALQHIETEVVNDCNCDDRRGRRARGNYKNLHNQ

Query:  RHARRGRINYDPLQLFKENAQE--EPWQEIQDDDSTSSDEQRNQWNLDGEVRMDRNNRRNDIRRESHHDYKMKIDLPTYNGKRDIESFSDWIKNTENFFN
        R+ +  R    PL+   +++ E  + WQ  Q+ DS+S DE+ N W+ +G+++M +  R ++ RRE HHDYKMK+DLPTYNGK DIESF D IKNTENFF 
Subjt:  RHARRGRINYDPLQLFKENAQE--EPWQEIQDDDSTSSDEQRNQWNLDGEVRMDRNNRRNDIRRESHHDYKMKIDLPTYNGKRDIESFSDWIKNTENFFN

Query:  YMDTPERKKMHLVALKLRAGASA
        YMDTP+RKK+HL+ALKLR G SA
Subjt:  YMDTPERKKMHLVALKLRAGASA

A0A5D3CJ99 Reverse transcriptase2.9e-6459.73Show/hide
Query:  MAGRRRNNPASGDDREQEEAEEIVALSSKTSTIRLLAIEESLGELHDKFDRLLENFEVLDRRMDGIPALQHIETEVVNDCNCDDRRGRRARGNYKNLHNQ
        MAGRR   PA+GD+REQEE EE  ALS +TST+  LA+E+SLG+LH+KFDR+++  E L RRMDG+PAL  IE    ND N  +R GRRAR N++NL NQ
Subjt:  MAGRRRNNPASGDDREQEEAEEIVALSSKTSTIRLLAIEESLGELHDKFDRLLENFEVLDRRMDGIPALQHIETEVVNDCNCDDRRGRRARGNYKNLHNQ

Query:  RHARRGRINYDPLQLFKENAQE--EPWQEIQDDDSTSSDEQRNQWNLDGEVRMDRNNRRNDIRRESHHDYKMKIDLPTYNGKRDIESFSDWIKNTENFFN
        R+ +R R   +PL+    ++ E  E WQ  Q+ DS+SSDEQ N WN + +++M +  R ++ +RE HHDYKMKIDLPTY GK D+ESF DWI+NTENFFN
Subjt:  RHARRGRINYDPLQLFKENAQE--EPWQEIQDDDSTSSDEQRNQWNLDGEVRMDRNNRRNDIRRESHHDYKMKIDLPTYNGKRDIESFSDWIKNTENFFN

Query:  YMDTPERKKMHLVALKLRAGASAWWD
        YMDT +RKK+HLVALKLR GASAWWD
Subjt:  YMDTPERKKMHLVALKLRAGASAWWD

A0A5D3DKV9 Reverse transcriptase4.3e-4753.14Show/hide
Query:  MAGRRRNNPASGDDREQEEAEEIVALSSKTSTIRLLAIEESLGELHDKFDRLLENFEVLDRRMDGIPALQHIETEVVNDCNCDDRRGRRARGNYKNLHNQ
        MAG+R   PA+ D+REQ+EAEEI  LS +TST+ LLA+E+SLG+LHDKFD+++++ E L++RMDG+ A   IE  VVND N  ++ GR+AR N++NL NQ
Subjt:  MAGRRRNNPASGDDREQEEAEEIVALSSKTSTIRLLAIEESLGELHDKFDRLLENFEVLDRRMDGIPALQHIETEVVNDCNCDDRRGRRARGNYKNLHNQ

Query:  RHARRGRINYDPLQLFKENAQEEPWQEIQDDDSTSSDEQRNQWNLDGEVRMDRNNRRNDIRRESHHDYKMKIDLPTYNGKRDIESFSDWIKNTENFFNYM
        ++ R  R N  PL                       DEQ N WN +G+ +M +  R  + RRE HHDYKMKIDLP +NGKRDI SF DWIK+TENFFNYM
Subjt:  RHARRGRINYDPLQLFKENAQEEPWQEIQDDDSTSSDEQRNQWNLDGEVRMDRNNRRNDIRRESHHDYKMKIDLPTYNGKRDIESFSDWIKNTENFFNYM

Query:  DTPERKK
        DTP RKK
Subjt:  DTPERKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGGCCGGAGAAGAAATAACCCAGCCTCGGGGGATGACCGTGAGCAAGAAGAAGCAGAGGAAATCGTCGCCCTCTCTTCAAAGACATCAACGATTCGCTTGCTAGC
CATCGAGGAATCCTTGGGAGAACTTCACGACAAGTTTGACAGATTACTAGAGAATTTTGAGGTGCTGGATCGAAGGATGGATGGGATACCGGCGCTGCAACATATAGAAA
CAGAAGTAGTAAACGACTGTAATTGTGATGATAGACGTGGCAGACGAGCAAGGGGAAATTACAAAAACCTCCACAACCAACGACACGCCCGAAGGGGAAGAATCAATTAT
GATCCACTGCAACTCTTTAAAGAAAATGCTCAAGAAGAACCATGGCAAGAAATTCAAGATGATGATTCAACGAGCAGCGATGAACAAAGGAACCAGTGGAACCTTGATGG
TGAAGTACGAATGGACCGAAATAATAGGAGGAATGATATACGAAGAGAGTCACATCATGACTACAAGATGAAAATAGACCTCCCAACCTATAATGGTAAACGAGACATAG
AATCCTTTTCGGATTGGATAAAGAACACTGAAAACTTCTTCAACTATATGGATACTCCAGAAAGGAAAAAGATGCATTTAGTAGCCTTGAAACTCAGAGCAGGTGCTTCG
GCATGGTGGGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTGGCCGGAGAAGAAATAACCCAGCCTCGGGGGATGACCGTGAGCAAGAAGAAGCAGAGGAAATCGTCGCCCTCTCTTCAAAGACATCAACGATTCGCTTGCTAGC
CATCGAGGAATCCTTGGGAGAACTTCACGACAAGTTTGACAGATTACTAGAGAATTTTGAGGTGCTGGATCGAAGGATGGATGGGATACCGGCGCTGCAACATATAGAAA
CAGAAGTAGTAAACGACTGTAATTGTGATGATAGACGTGGCAGACGAGCAAGGGGAAATTACAAAAACCTCCACAACCAACGACACGCCCGAAGGGGAAGAATCAATTAT
GATCCACTGCAACTCTTTAAAGAAAATGCTCAAGAAGAACCATGGCAAGAAATTCAAGATGATGATTCAACGAGCAGCGATGAACAAAGGAACCAGTGGAACCTTGATGG
TGAAGTACGAATGGACCGAAATAATAGGAGGAATGATATACGAAGAGAGTCACATCATGACTACAAGATGAAAATAGACCTCCCAACCTATAATGGTAAACGAGACATAG
AATCCTTTTCGGATTGGATAAAGAACACTGAAAACTTCTTCAACTATATGGATACTCCAGAAAGGAAAAAGATGCATTTAGTAGCCTTGAAACTCAGAGCAGGTGCTTCG
GCATGGTGGGATTAG
Protein sequenceShow/hide protein sequence
MAGRRRNNPASGDDREQEEAEEIVALSSKTSTIRLLAIEESLGELHDKFDRLLENFEVLDRRMDGIPALQHIETEVVNDCNCDDRRGRRARGNYKNLHNQRHARRGRINY
DPLQLFKENAQEEPWQEIQDDDSTSSDEQRNQWNLDGEVRMDRNNRRNDIRRESHHDYKMKIDLPTYNGKRDIESFSDWIKNTENFFNYMDTPERKKMHLVALKLRAGAS
AWWD