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PI0024866 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0024866
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationchr07:23809591..23810037
RNA-Seq ExpressionPI0024866
SyntenyPI0024866
Gene Ontology termsGO:0016020 - membrane (cellular component)
GO:0005488 - binding (molecular function)
InterPro domainsIPR029472 - Retrotransposon Copia-like, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049700.1 T4.5 [Cucumis melo var. makuwa]1.9e-2955Show/hide
Query:  SSTFEELSSPLFLLTNICNLISIRLNSTNYMLWKFQFDQPMLRAQKLYGFINGSNVAPPKTILISSNATTQTSSSSTTVTANPQFEDWQAKYQALISLIN
        SS  ++  SP+FLL+NICNLIS+RL+STN++LWKFQ    +L+A KLYGFI+G+N  PP+T          +S+S+    +NP +EDW AK QAL+++IN
Subjt:  SSTFEELSSPLFLLTNICNLISIRLNSTNYMLWKFQFDQPMLRAQKLYGFINGSNVAPPKTILISSNATTQTSSSSTTVTANPQFEDWQAKYQALISLIN

Query:  ATMFVEALAYVGGCKLSKQVWKTLKKHYSSSTRSNIVNLK
        AT+  EALAYV G   SKQVW  L K YSS +RSN+VNLK
Subjt:  ATMFVEALAYVGGCKLSKQVWKTLKKHYSSSTRSNIVNLK

TYK17989.1 uncharacterized protein E5676_scaffold306G002980 [Cucumis melo var. makuwa]5.8e-4771.71Show/hide
Query:  MGTKASSLSSTFEELSSPLFLLTNICNLISIRLNSTNYMLWKFQFDQPMLRAQKLYGFINGSNVAPPKTI----LISSNATTQTSSSSTTVTANPQFEDW
        M T+ASS SST +ELSSPLFLLTNICNLISIRL+STNY LWKFQF +PML+A KLYGFI+ S   PPKTI      SS+ATTQT+SSSTT  +NP +EDW
Subjt:  MGTKASSLSSTFEELSSPLFLLTNICNLISIRLNSTNYMLWKFQFDQPMLRAQKLYGFINGSNVAPPKTI----LISSNATTQTSSSSTTVTANPQFEDW

Query:  QAKYQALISLINATMFVEALAYVGGCKLSKQVWKTLKKHYSSSTRSNIVNLK
        QAK QA + LINAT+ VEAL YV GCK S QVWKTL++HYSS+TR+NIVNLK
Subjt:  QAKYQALISLINATMFVEALAYVGGCKLSKQVWKTLKKHYSSSTRSNIVNLK

XP_008448007.1 PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo]1.9e-2955Show/hide
Query:  SSTFEELSSPLFLLTNICNLISIRLNSTNYMLWKFQFDQPMLRAQKLYGFINGSNVAPPKTILISSNATTQTSSSSTTVTANPQFEDWQAKYQALISLIN
        SS  ++  SP+FLL+NICNLIS+RL+STN++LWKFQ    +L+A KLYGFI+G+N  PP+T          +S+S+    +NP +EDW AK QAL+++IN
Subjt:  SSTFEELSSPLFLLTNICNLISIRLNSTNYMLWKFQFDQPMLRAQKLYGFINGSNVAPPKTILISSNATTQTSSSSTTVTANPQFEDWQAKYQALISLIN

Query:  ATMFVEALAYVGGCKLSKQVWKTLKKHYSSSTRSNIVNLK
        AT+  EALAYV G   SKQVW  L K YSS +RSN+VNLK
Subjt:  ATMFVEALAYVGGCKLSKQVWKTLKKHYSSSTRSNIVNLK

XP_008448008.1 PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo]1.9e-2955Show/hide
Query:  SSTFEELSSPLFLLTNICNLISIRLNSTNYMLWKFQFDQPMLRAQKLYGFINGSNVAPPKTILISSNATTQTSSSSTTVTANPQFEDWQAKYQALISLIN
        SS  ++  SP+FLL+NICNLIS+RL+STN++LWKFQ    +L+A KLYGFI+G+N  PP+T          +S+S+    +NP +EDW AK QAL+++IN
Subjt:  SSTFEELSSPLFLLTNICNLISIRLNSTNYMLWKFQFDQPMLRAQKLYGFINGSNVAPPKTILISSNATTQTSSSSTTVTANPQFEDWQAKYQALISLIN

Query:  ATMFVEALAYVGGCKLSKQVWKTLKKHYSSSTRSNIVNLK
        AT+  EALAYV G   SKQVW  L K YSS +RSN+VNLK
Subjt:  ATMFVEALAYVGGCKLSKQVWKTLKKHYSSSTRSNIVNLK

XP_022150845.1 uncharacterized protein LOC111018892 [Momordica charantia]1.2e-3154.55Show/hide
Query:  SSLSSTFEELSSPLFLLTNICNLISIRLNSTNYMLWKFQFDQPMLRAQKLYGFINGSNVAPPKTILISSNATTQTSSSSTTVTANPQFEDWQAKYQALIS
        SS ++T ++L SP+FLL+NICNL+SIRL+ST+++LWKFQ    +L+A KL+GFI+GS  AP + +  SS   +Q +++++    NP FEDW AK QAL++
Subjt:  SSLSSTFEELSSPLFLLTNICNLISIRLNSTNYMLWKFQFDQPMLRAQKLYGFINGSNVAPPKTILISSNATTQTSSSSTTVTANPQFEDWQAKYQALIS

Query:  LINATMFVEALAYVGGCKLSKQVWKTLKKHYSSSTRSNIVNLK
        LINAT+  EALAYV     SKQVW+ L+KHYSS++R+N+VNLK
Subjt:  LINATMFVEALAYVGGCKLSKQVWKTLKKHYSSSTRSNIVNLK

TrEMBL top hitse value%identityAlignment
A0A1S3BI58 uncharacterized protein LOC103490319 isoform X29.1e-3055Show/hide
Query:  SSTFEELSSPLFLLTNICNLISIRLNSTNYMLWKFQFDQPMLRAQKLYGFINGSNVAPPKTILISSNATTQTSSSSTTVTANPQFEDWQAKYQALISLIN
        SS  ++  SP+FLL+NICNLIS+RL+STN++LWKFQ    +L+A KLYGFI+G+N  PP+T          +S+S+    +NP +EDW AK QAL+++IN
Subjt:  SSTFEELSSPLFLLTNICNLISIRLNSTNYMLWKFQFDQPMLRAQKLYGFINGSNVAPPKTILISSNATTQTSSSSTTVTANPQFEDWQAKYQALISLIN

Query:  ATMFVEALAYVGGCKLSKQVWKTLKKHYSSSTRSNIVNLK
        AT+  EALAYV G   SKQVW  L K YSS +RSN+VNLK
Subjt:  ATMFVEALAYVGGCKLSKQVWKTLKKHYSSSTRSNIVNLK

A0A1S4DWT9 uncharacterized protein LOC103490319 isoform X19.1e-3055Show/hide
Query:  SSTFEELSSPLFLLTNICNLISIRLNSTNYMLWKFQFDQPMLRAQKLYGFINGSNVAPPKTILISSNATTQTSSSSTTVTANPQFEDWQAKYQALISLIN
        SS  ++  SP+FLL+NICNLIS+RL+STN++LWKFQ    +L+A KLYGFI+G+N  PP+T          +S+S+    +NP +EDW AK QAL+++IN
Subjt:  SSTFEELSSPLFLLTNICNLISIRLNSTNYMLWKFQFDQPMLRAQKLYGFINGSNVAPPKTILISSNATTQTSSSSTTVTANPQFEDWQAKYQALISLIN

Query:  ATMFVEALAYVGGCKLSKQVWKTLKKHYSSSTRSNIVNLK
        AT+  EALAYV G   SKQVW  L K YSS +RSN+VNLK
Subjt:  ATMFVEALAYVGGCKLSKQVWKTLKKHYSSSTRSNIVNLK

A0A5D3CLI6 T4.59.1e-3055Show/hide
Query:  SSTFEELSSPLFLLTNICNLISIRLNSTNYMLWKFQFDQPMLRAQKLYGFINGSNVAPPKTILISSNATTQTSSSSTTVTANPQFEDWQAKYQALISLIN
        SS  ++  SP+FLL+NICNLIS+RL+STN++LWKFQ    +L+A KLYGFI+G+N  PP+T          +S+S+    +NP +EDW AK QAL+++IN
Subjt:  SSTFEELSSPLFLLTNICNLISIRLNSTNYMLWKFQFDQPMLRAQKLYGFINGSNVAPPKTILISSNATTQTSSSSTTVTANPQFEDWQAKYQALISLIN

Query:  ATMFVEALAYVGGCKLSKQVWKTLKKHYSSSTRSNIVNLK
        AT+  EALAYV G   SKQVW  L K YSS +RSN+VNLK
Subjt:  ATMFVEALAYVGGCKLSKQVWKTLKKHYSSSTRSNIVNLK

A0A5D3D3T6 Retrotran_gag_3 domain-containing protein2.8e-4771.71Show/hide
Query:  MGTKASSLSSTFEELSSPLFLLTNICNLISIRLNSTNYMLWKFQFDQPMLRAQKLYGFINGSNVAPPKTI----LISSNATTQTSSSSTTVTANPQFEDW
        M T+ASS SST +ELSSPLFLLTNICNLISIRL+STNY LWKFQF +PML+A KLYGFI+ S   PPKTI      SS+ATTQT+SSSTT  +NP +EDW
Subjt:  MGTKASSLSSTFEELSSPLFLLTNICNLISIRLNSTNYMLWKFQFDQPMLRAQKLYGFINGSNVAPPKTI----LISSNATTQTSSSSTTVTANPQFEDW

Query:  QAKYQALISLINATMFVEALAYVGGCKLSKQVWKTLKKHYSSSTRSNIVNLK
        QAK QA + LINAT+ VEAL YV GCK S QVWKTL++HYSS+TR+NIVNLK
Subjt:  QAKYQALISLINATMFVEALAYVGGCKLSKQVWKTLKKHYSSSTRSNIVNLK

A0A6J1D9L6 uncharacterized protein LOC1110188925.7e-3254.55Show/hide
Query:  SSLSSTFEELSSPLFLLTNICNLISIRLNSTNYMLWKFQFDQPMLRAQKLYGFINGSNVAPPKTILISSNATTQTSSSSTTVTANPQFEDWQAKYQALIS
        SS ++T ++L SP+FLL+NICNL+SIRL+ST+++LWKFQ    +L+A KL+GFI+GS  AP + +  SS   +Q +++++    NP FEDW AK QAL++
Subjt:  SSLSSTFEELSSPLFLLTNICNLISIRLNSTNYMLWKFQFDQPMLRAQKLYGFINGSNVAPPKTILISSNATTQTSSSSTTVTANPQFEDWQAKYQALIS

Query:  LINATMFVEALAYVGGCKLSKQVWKTLKKHYSSSTRSNIVNLK
        LINAT+  EALAYV     SKQVW+ L+KHYSS++R+N+VNLK
Subjt:  LINATMFVEALAYVGGCKLSKQVWKTLKKHYSSSTRSNIVNLK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAACCAAGGCAAGCTCTTTGTCTTCAACCTTCGAAGAGTTATCATCACCACTCTTCCTTTTAACCAACATATGTAATTTGATATCCATTCGTCTTAATTCCACCAA
CTATATGCTTTGGAAGTTCCAATTTGATCAACCAATGTTGAGAGCACAAAAACTTTATGGCTTCATCAATGGATCAAATGTTGCTCCTCCAAAAACAATTTTGATTTCTT
CAAACGCTACCACTCAGACTTCTTCGTCTTCAACTACGGTAACCGCAAATCCTCAGTTTGAAGATTGGCAAGCAAAATATCAAGCGTTAATCTCTCTTATTAATGCTACT
ATGTTCGTCGAAGCACTGGCTTATGTTGGTGGATGCAAATTGTCGAAACAAGTTTGGAAAACGTTGAAGAAGCACTATTCCTCTAGCACTAGGTCAAATATAGTTAATCT
AAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAACCAAGGCAAGCTCTTTGTCTTCAACCTTCGAAGAGTTATCATCACCACTCTTCCTTTTAACCAACATATGTAATTTGATATCCATTCGTCTTAATTCCACCAA
CTATATGCTTTGGAAGTTCCAATTTGATCAACCAATGTTGAGAGCACAAAAACTTTATGGCTTCATCAATGGATCAAATGTTGCTCCTCCAAAAACAATTTTGATTTCTT
CAAACGCTACCACTCAGACTTCTTCGTCTTCAACTACGGTAACCGCAAATCCTCAGTTTGAAGATTGGCAAGCAAAATATCAAGCGTTAATCTCTCTTATTAATGCTACT
ATGTTCGTCGAAGCACTGGCTTATGTTGGTGGATGCAAATTGTCGAAACAAGTTTGGAAAACGTTGAAGAAGCACTATTCCTCTAGCACTAGGTCAAATATAGTTAATCT
AAAATAA
Protein sequenceShow/hide protein sequence
MGTKASSLSSTFEELSSPLFLLTNICNLISIRLNSTNYMLWKFQFDQPMLRAQKLYGFINGSNVAPPKTILISSNATTQTSSSSTTVTANPQFEDWQAKYQALISLINAT
MFVEALAYVGGCKLSKQVWKTLKKHYSSSTRSNIVNLK