CuGenDBv2

Gene ID	PI0024880
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Transcription factor IIIB subunit
Genome location	chr04:33250176..33253717
RNA-Seq Expression	PI0024880
Synteny	PI0024880
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004148363.1 uncharacterized protein LOC101210706 [Cucumis sativus]

3.4e-58

86.84

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Query:  MDKLLQFGRRALFYVRVLSGYEERRIRSLRLELEKRLEQAEKRKAAIRKIPERAILGEVRRMVEEMQTLNRKLEETESAIEEYFKPIDKEAETLMKIQLQ
        MDKLLQFGRRALFYVRVLSGYEERRIRSLR +L+KRL+QAE+RK+AIRK+PE+ ILGEVRRMVEEMQ LN+KLEETE+AIEEYFKPIDKEAETLMKIQL+
Subjt:  MDKLLQFGRRALFYVRVLSGYEERRIRSLRLELEKRLEQAEKRKAAIRKIPERAILGEVRRMVEEMQTLNRKLEETESAIEEYFKPIDKEAETLMKIQLQ

Query:  GEERSMKDMVKVMQQQAVFEKAEAGKVTS-TLQTEKNQQTQNLASDTTLQKT
        GEER+M+DMVKVMQQQA+ EKAEAGKVTS  LQTEKNQQTQNLASDTT QKT
Subjt:  GEERSMKDMVKVMQQQAVFEKAEAGKVTS-TLQTEKNQQTQNLASDTTLQKT

XP_008465889.1 PREDICTED: uncharacterized protein LOC103503473 [Cucumis melo]

4.7e-60

88.74

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Query:  MDKLLQFGRRALFYVRVLSGYEERRIRSLRLELEKRLEQAEKRKAAIRKIPERAILGEVRRMVEEMQTLNRKLEETESAIEEYFKPIDKEAETLMKIQLQ
        MDKLLQFGRRALFY+RVLSGYEERRIRS RL L+KRL+QAE+RKAAIRK+PE+AILGEVRRMVEEMQTLN+ LEETESAIEEYFKPIDKEAE LMKIQL+
Subjt:  MDKLLQFGRRALFYVRVLSGYEERRIRSLRLELEKRLEQAEKRKAAIRKIPERAILGEVRRMVEEMQTLNRKLEETESAIEEYFKPIDKEAETLMKIQLQ

Query:  GEERSMKDMVKVMQQQAVFEKAEAGKVTSTLQTEKNQQTQNLASDTTLQKT
        GEERSMKDMVKVMQQQA+F++AEAGKVT+TLQTEKNQQTQNLASDTT QKT
Subjt:  GEERSMKDMVKVMQQQAVFEKAEAGKVTSTLQTEKNQQTQNLASDTTLQKT

XP_022131261.1 uncharacterized protein LOC111004517 [Momordica charantia]

3.4e-58

87.5

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Query:  MDKLLQFGRRALFYVRVLSGYEERRIRSLRLELEKRLEQAEKRKAAIRKIPERAILGEVRRMVEEMQTLNRKLEETESAIEEYFKPIDKEAETLMKIQLQ
        MDKLL+FGRRALFYVRVLSGYEERRIRS RLELEKRL+QAE++KAA+RKIPE+AILGEVRRMVEEMQTLN+KLEETESAIEEYFKPIDKEAE LMK+QL+
Subjt:  MDKLLQFGRRALFYVRVLSGYEERRIRSLRLELEKRLEQAEKRKAAIRKIPERAILGEVRRMVEEMQTLNRKLEETESAIEEYFKPIDKEAETLMKIQLQ

Query:  GEERSMKDMVKVMQQQAVFEKAEAGKV-TSTLQTEKNQQTQNLASDTTLQKT
        GEER MKDMVKVMQQQA+FEKAEAGKV TSTLQT+KNQ  QNLASD T QKT
Subjt:  GEERSMKDMVKVMQQQAVFEKAEAGKV-TSTLQTEKNQQTQNLASDTTLQKT

XP_022996261.1 uncharacterized protein LOC111491540 [Cucurbita maxima]

8.0e-52

82.98

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Query:  MDKLLQFGRRALFYVRVLSGYEERRIRSLRLELEKRLEQAEKRKAAIRKIPERAILGEVRRMVEEMQTLNRKLEETESAIEEYFKPIDKEAETLMKIQLQ
        MDK+L+ GRRALFYV+VLSGYEERRIRS RLELEKRL++AE+RKAAIRKIPE+AILGEVRRMVEEMQTLN+KLEETESAIEEYFKPIDKE ETLM++QL+
Subjt:  MDKLLQFGRRALFYVRVLSGYEERRIRSLRLELEKRLEQAEKRKAAIRKIPERAILGEVRRMVEEMQTLNRKLEETESAIEEYFKPIDKEAETLMKIQLQ

Query:  GEERSMKDMVKVMQQQAVFEKAEAGKVTSTLQTEKNQQTQN
        GEER+MK+MVKVMQQQA+ EK EA KV STLQT+KNQQ Q+
Subjt:  GEERSMKDMVKVMQQQAVFEKAEAGKVTSTLQTEKNQQTQN

XP_038886906.1 uncharacterized protein LOC120077104 [Benincasa hispida]

1.3e-62

92.05

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Query:  MDKLLQFGRRALFYVRVLSGYEERRIRSLRLELEKRLEQAEKRKAAIRKIPERAILGEVRRMVEEMQTLNRKLEETESAIEEYFKPIDKEAETLMKIQLQ
        MDKLL+FGRRALFYVRVLSGYEERRIRS RLELEKRL+QAE+RKAAIRKIPE+AILGEVRRMVEEMQTLN+KLEETESAIEEYFKPIDKEAE LMKIQL+
Subjt:  MDKLLQFGRRALFYVRVLSGYEERRIRSLRLELEKRLEQAEKRKAAIRKIPERAILGEVRRMVEEMQTLNRKLEETESAIEEYFKPIDKEAETLMKIQLQ

Query:  GEERSMKDMVKVMQQQAVFEKAEAGKVTSTLQTEKNQQTQNLASDTTLQKT
        GEER+MKDMVKVMQQQA+FEKAEAGKVTSTLQT+KNQQTQNLASDTT QKT
Subjt:  GEERSMKDMVKVMQQQAVFEKAEAGKVTSTLQTEKNQQTQNLASDTTLQKT

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LKE0 Uncharacterized protein

1.6e-58

86.84

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Query:  MDKLLQFGRRALFYVRVLSGYEERRIRSLRLELEKRLEQAEKRKAAIRKIPERAILGEVRRMVEEMQTLNRKLEETESAIEEYFKPIDKEAETLMKIQLQ
        MDKLLQFGRRALFYVRVLSGYEERRIRSLR +L+KRL+QAE+RK+AIRK+PE+ ILGEVRRMVEEMQ LN+KLEETE+AIEEYFKPIDKEAETLMKIQL+
Subjt:  MDKLLQFGRRALFYVRVLSGYEERRIRSLRLELEKRLEQAEKRKAAIRKIPERAILGEVRRMVEEMQTLNRKLEETESAIEEYFKPIDKEAETLMKIQLQ

Query:  GEERSMKDMVKVMQQQAVFEKAEAGKVTS-TLQTEKNQQTQNLASDTTLQKT
        GEER+M+DMVKVMQQQA+ EKAEAGKVTS  LQTEKNQQTQNLASDTT QKT
Subjt:  GEERSMKDMVKVMQQQAVFEKAEAGKVTS-TLQTEKNQQTQNLASDTTLQKT

A0A1S3CPZ1 uncharacterized protein LOC103503473

2.3e-60

88.74

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Query:  MDKLLQFGRRALFYVRVLSGYEERRIRSLRLELEKRLEQAEKRKAAIRKIPERAILGEVRRMVEEMQTLNRKLEETESAIEEYFKPIDKEAETLMKIQLQ
        MDKLLQFGRRALFY+RVLSGYEERRIRS RL L+KRL+QAE+RKAAIRK+PE+AILGEVRRMVEEMQTLN+ LEETESAIEEYFKPIDKEAE LMKIQL+
Subjt:  MDKLLQFGRRALFYVRVLSGYEERRIRSLRLELEKRLEQAEKRKAAIRKIPERAILGEVRRMVEEMQTLNRKLEETESAIEEYFKPIDKEAETLMKIQLQ

Query:  GEERSMKDMVKVMQQQAVFEKAEAGKVTSTLQTEKNQQTQNLASDTTLQKT
        GEERSMKDMVKVMQQQA+F++AEAGKVT+TLQTEKNQQTQNLASDTT QKT
Subjt:  GEERSMKDMVKVMQQQAVFEKAEAGKVTSTLQTEKNQQTQNLASDTTLQKT

A0A6J1BQI2 uncharacterized protein LOC111004517

1.6e-58

87.5

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Query:  MDKLLQFGRRALFYVRVLSGYEERRIRSLRLELEKRLEQAEKRKAAIRKIPERAILGEVRRMVEEMQTLNRKLEETESAIEEYFKPIDKEAETLMKIQLQ
        MDKLL+FGRRALFYVRVLSGYEERRIRS RLELEKRL+QAE++KAA+RKIPE+AILGEVRRMVEEMQTLN+KLEETESAIEEYFKPIDKEAE LMK+QL+
Subjt:  MDKLLQFGRRALFYVRVLSGYEERRIRSLRLELEKRLEQAEKRKAAIRKIPERAILGEVRRMVEEMQTLNRKLEETESAIEEYFKPIDKEAETLMKIQLQ

Query:  GEERSMKDMVKVMQQQAVFEKAEAGKV-TSTLQTEKNQQTQNLASDTTLQKT
        GEER MKDMVKVMQQQA+FEKAEAGKV TSTLQT+KNQ  QNLASD T QKT
Subjt:  GEERSMKDMVKVMQQQAVFEKAEAGKV-TSTLQTEKNQQTQNLASDTTLQKT

A0A6J1H1D7 uncharacterized protein LOC111459545

8.6e-52

82.27

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Query:  MDKLLQFGRRALFYVRVLSGYEERRIRSLRLELEKRLEQAEKRKAAIRKIPERAILGEVRRMVEEMQTLNRKLEETESAIEEYFKPIDKEAETLMKIQLQ
        MDK+L+FGRRALFYV+VLSGYEERRIRSLRLELEKRL++AE+RKAAIR+IPE+AILGEVRRMVEEMQTLN+KLEETESAIEEYFKPIDKE E LM++QL+
Subjt:  MDKLLQFGRRALFYVRVLSGYEERRIRSLRLELEKRLEQAEKRKAAIRKIPERAILGEVRRMVEEMQTLNRKLEETESAIEEYFKPIDKEAETLMKIQLQ

Query:  GEERSMKDMVKVMQQQAVFEKAEAGKVTSTLQTEKNQQTQN
        GEER+MK+MVKV+QQQA+ EK EA KV STLQT+KNQQ Q+
Subjt:  GEERSMKDMVKVMQQQAVFEKAEAGKVTSTLQTEKNQQTQN

A0A6J1K1F5 uncharacterized protein LOC111491540

3.9e-52

82.98

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Query:  MDKLLQFGRRALFYVRVLSGYEERRIRSLRLELEKRLEQAEKRKAAIRKIPERAILGEVRRMVEEMQTLNRKLEETESAIEEYFKPIDKEAETLMKIQLQ
        MDK+L+ GRRALFYV+VLSGYEERRIRS RLELEKRL++AE+RKAAIRKIPE+AILGEVRRMVEEMQTLN+KLEETESAIEEYFKPIDKE ETLM++QL+
Subjt:  MDKLLQFGRRALFYVRVLSGYEERRIRSLRLELEKRLEQAEKRKAAIRKIPERAILGEVRRMVEEMQTLNRKLEETESAIEEYFKPIDKEAETLMKIQLQ

Query:  GEERSMKDMVKVMQQQAVFEKAEAGKVTSTLQTEKNQQTQN
        GEER+MK+MVKVMQQQA+ EK EA KV STLQT+KNQQ Q+
Subjt:  GEERSMKDMVKVMQQQAVFEKAEAGKVTSTLQTEKNQQTQN

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G17010.1 unknown protein

2.9e-36

60.63

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Query:  MDKLLQFGRRALFYVRVLSGYEERRIRSLRLELEKRLEQAEKRKAAIRKIPERAILGEVRRMVEEMQTLNRKLEETESAIEEYFKPIDKEAETLMKIQLQ
        M+KLL++GR+A+FYVRVLSGYEERRIRS RL+LEKR++QA +RK  I ++PE+ +L EVRRMVEEMQ LN+++E TE+ IE+YFKPIDK A T+M+IQL+
Subjt:  MDKLLQFGRRALFYVRVLSGYEERRIRSLRLELEKRLEQAEKRKAAIRKIPERAILGEVRRMVEEMQTLNRKLEETESAIEEYFKPIDKEAETLMKIQLQ

Query:  GEERSMKDMVKVMQQQAVFEKAEAGKV
        GE+++M  M+   QQ+A+ +  EA K+
Subjt:  GEERSMKDMVKVMQQQAVFEKAEAGKV

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGACAAGCTTTTGCAGTTTGGACGAAGAGCCCTTTTCTACGTTAGGGTCCTCTCTGGCTATGAAGAGCGGCGGATTCGATCGCTTAGGTTGGAGCTTGAAAAGCGTCT
CGAACAGGCGGAGAAAAGAAAAGCTGCCATAAGAAAGATACCAGAACGGGCTATCTTAGGTGAAGTTCGTCGTATGGTTGAGGAGATGCAAACTCTAAATAGAAAGTTAG
AGGAAACAGAATCTGCCATTGAAGAATACTTCAAGCCAATTGACAAAGAAGCAGAGACATTGATGAAAATACAACTGCAAGGAGAAGAGAGAAGTATGAAGGACATGGTT
AAAGTTATGCAGCAACAGGCTGTGTTTGAAAAAGCTGAGGCAGGTAAGGTTACAAGTACTCTTCAAACTGAAAAAAATCAACAAACTCAAAATCTTGCATCTGACACAAC
CCTTCAAAAAACTTAG

mRNA sequence

Show/hide mRNA sequence

ACAAAATTAAACAAAATTTTCTTTTGCCAAGGATGAAGGTTGAATGTCCCCATCCCTATGTATTGTCCCATGGACATCTCCAATACCAAATTGATTTATTTTTTTTCTAA
AGTGCAACTATTAAACTCACATTCAAAAGAGGGACTATTTTGTAACTTACCTAAAAAAAATTCTCTAGAGATGCATAGCAAAATCTTCTTAAGCCATATATAAGCTTCGA
AGTAAATCCGCCACGAGAAGGGGGAAAAACACAGCCTCTCCGCAGTACTTTGTTCGTTCCAAATGGATTAATGACTTCTTCTGGGAGATCAGCTTGAGGGATTTGGATGG
ACAAGCTTTTGCAGTTTGGACGAAGAGCCCTTTTCTACGTTAGGGTCCTCTCTGGCTATGAAGAGCGGCGGATTCGATCGCTTAGGTTGGAGCTTGAAAAGCGTCTCGAA
CAGGCGGAGAAAAGAAAAGCTGCCATAAGAAAGATACCAGAACGGGCTATCTTAGGTGAAGTTCGTCGTATGGTTGAGGAGATGCAAACTCTAAATAGAAAGTTAGAGGA
AACAGAATCTGCCATTGAAGAATACTTCAAGCCAATTGACAAAGAAGCAGAGACATTGATGAAAATACAACTGCAAGGAGAAGAGAGAAGTATGAAGGACATGGTTAAAG
TTATGCAGCAACAGGCTGTGTTTGAAAAAGCTGAGGCAGGTAAGGTTACAAGTACTCTTCAAACTGAAAAAAATCAACAAACTCAAAATCTTGCATCTGACACAACCCTT
CAAAAAACTTAGCTGAGGTAATAATTCTACGAGAAGTTAGTGATGATTTGATTTGATTAATAAAAGTCTGTTACTGTTCAATTTTGTTGCCACCAAACCTCTCCATAGTT
GTTGTGATTATAAAGCCCCTTAGATTTAATTACAGAGGCATTATTGATTATTTCTAGTTTAGTATATGAATCATTTTTCTTACCCATTTCAGATGTATGGATTTGTGATT
CTCAATCTCAAGTTTTTTCTAGTATGAAACTGTTTTTTCTCACTTTTGCAAACCAA

Protein sequence

Show/hide protein sequence

MDKLLQFGRRALFYVRVLSGYEERRIRSLRLELEKRLEQAEKRKAAIRKIPERAILGEVRRMVEEMQTLNRKLEETESAIEEYFKPIDKEAETLMKIQLQGEERSMKDMV
KVMQQQAVFEKAEAGKVTSTLQTEKNQQTQNLASDTTLQKT

PI0024880 (gene) of Melon (PI 482460) v1 genome