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PI0024894 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0024894
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr06:11589761..11590754
RNA-Seq ExpressionPI0024894
SyntenyPI0024894
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044843.1 retrotransposon protein [Cucumis melo var. makuwa]4.0e-7250.99Show/hide
Query:  MASSSRAPKHLWTREEST-LVECLMELVSAGGWKSDSGTFRLGYLAQLQRMMAEKLLGTNIQGSPTIDYQIKTLKKSFQAITEMCGSSYSGFGWNDEIKC
        M SSSR PKH WT+EE   LVECL+ELV+AGGW+SD+GTFR GYL QL RMMA K+ G N   S TID +IK +K+ F A+ EMCG + SGFGWNDE KC
Subjt:  MASSSRAPKHLWTREEST-LVECLMELVSAGGWKSDSGTFRLGYLAQLQRMMAEKLLGTNIQGSPTIDYQIKTLKKSFQAITEMCGSSYSGFGWNDEIKC

Query:  IITEKDMFDNWVKSHLAVKGLLNKLFSYYNKLSYVFGKDCATVARAETFTNVGSNVPKGYEEFPTDDGNNVEIPMMYSQGLNMSPNDIMGPRPSRSSE--
        II EK++FD+W  SH A KGLLNK F +Y++LSYVFGKD AT  RAE+F ++GSN P GY+ F  D   + + P MYS GLNMSP+D+M  R +R SE  
Subjt:  IITEKDMFDNWVKSHLAVKGLLNKLFSYYNKLSYVFGKDCATVARAETFTNVGSNVPKGYEEFPTDDGNNVEIPMMYSQGLNMSPNDIMGPRPSRSSE--

Query:  ---------------------------------------------------EVISQLQGIPELSSRDRVRLMRILMRNVNDMKAFLLVPDELKLDYCTVI
                                                           E++ QL+ IPEL+  DR RLMRI+MRNV+DMKAFL VPD +K  YC++I
Subjt:  ---------------------------------------------------EVISQLQGIPELSSRDRVRLMRILMRNVNDMKAFLLVPDELKLDYCTVI

Query:  LEEN
        L+EN
Subjt:  LEEN

KAA0047509.1 retrotransposon protein [Cucumis melo var. makuwa]7.2e-7454.26Show/hide
Query:  MASSSRAPKHLWTREEST-LVECLMELVSAGGWKSDSGTFRLGYLAQLQRMMAEKLLGTNIQGSPTIDYQIKTLKKSFQAITEMCGSSYSGFGWNDEIKC
        M SSSR PKH WT+EE   LVECL+ELV+AGGW+SD+GTFR GYL QL RMMA K+ G NI  S TID +IK +K+ F A+ EM G + SGFGWNDE KC
Subjt:  MASSSRAPKHLWTREEST-LVECLMELVSAGGWKSDSGTFRLGYLAQLQRMMAEKLLGTNIQGSPTIDYQIKTLKKSFQAITEMCGSSYSGFGWNDEIKC

Query:  IITEKDMFDNWVKSHLAVKGLLNKLFSYYNKLSYVFGKDCATVARAETFTNVGSNVPKGYEEFPTDDGNNVEIPMMYSQGLNMSPNDIMGPRPSR-----
        II EK++FD+W  SH A KGLLNK F +Y++LSYVFGKD AT  RAE+FT++GSN P GY+ F  D   + + P MYS GLNMSP+D+M  R +R     
Subjt:  IITEKDMFDNWVKSHLAVKGLLNKLFSYYNKLSYVFGKDCATVARAETFTNVGSNVPKGYEEFPTDDGNNVEIPMMYSQGLNMSPNDIMGPRPSR-----

Query:  --------------------------SSEEVISQLQGIPELSSRDRVRLMRILMRNVNDMKAFLLVPDELKLDYCTVILEEN
                                  + +E++ QL+ IPEL+  DR RLMRI+MRNV+DMKAFL VPD +   YC++IL+EN
Subjt:  --------------------------SSEEVISQLQGIPELSSRDRVRLMRILMRNVNDMKAFLLVPDELKLDYCTVILEEN

KAA0054347.1 retrotransposon protein [Cucumis melo var. makuwa]8.6e-7557.25Show/hide
Query:  MASSSRAPKHLWTREEST-LVECLMELVSAGGWKSDSGTFRLGYLAQLQRMMAEKLLGTNIQGSPTIDYQIKTLKKSFQAITEMCGSSYSGFGWNDEIKC
        MASSSR PKH WT+EE   LVECL+ELV+AGGW+SD+GTFR  YL QL RMMA K+ G+N+  S TID +IK LK+ F AI EM G + SGFGWNDE KC
Subjt:  MASSSRAPKHLWTREEST-LVECLMELVSAGGWKSDSGTFRLGYLAQLQRMMAEKLLGTNIQGSPTIDYQIKTLKKSFQAITEMCGSSYSGFGWNDEIKC

Query:  IITEKDMFDNWVKSHLAVKGLLNKLFSYYNKLSYVFGKDCATVARAETFTNVGSNVPKGYEEFPTDDGNNVEIPMMYSQGLNMSPNDIMGPRPSRSSE--
        I+ EK++FDNWVKSHLA KGLL KLF +Y++LSYVFGKD AT   AE+F +VGSN   GYE F  +   +     MYSQ LNMSP+++MG R +R SE  
Subjt:  IITEKDMFDNWVKSHLAVKGLLNKLFSYYNKLSYVFGKDCATVARAETFTNVGSNVPKGYEEFPTDDGNNVEIPMMYSQGLNMSPNDIMGPRPSRSSE--

Query:  -----------------------EVISQLQGIPELSSRDRVRLMRILMRNVNDMKAFLLVPDELKLDYCTVILEEN
                               EV+ QL+ IPEL+  DR  LM ILMRNVNDMKAFL VPD +K  YC++IL+EN
Subjt:  -----------------------EVISQLQGIPELSSRDRVRLMRILMRNVNDMKAFLLVPDELKLDYCTVILEEN

KAA0065892.1 retrotransposon protein [Cucumis melo var. makuwa]4.0e-7250.99Show/hide
Query:  MASSSRAPKHLWTREEST-LVECLMELVSAGGWKSDSGTFRLGYLAQLQRMMAEKLLGTNIQGSPTIDYQIKTLKKSFQAITEMCGSSYSGFGWNDEIKC
        M SSSR PKH WT+EE   LV CL+ELV+AGGW+SD+GTFR GYL QL RMMA K+ G NI  S TID +IK +K+ F A+ EM G +YSGF WNDE KC
Subjt:  MASSSRAPKHLWTREEST-LVECLMELVSAGGWKSDSGTFRLGYLAQLQRMMAEKLLGTNIQGSPTIDYQIKTLKKSFQAITEMCGSSYSGFGWNDEIKC

Query:  IITEKDMFDNWVKSHLAVKGLLNKLFSYYNKLSYVFGKDCATVARAETFTNVGSNVPKGYEEFPTDDGNNVEIPMMYSQGLNMSPNDIMGPRPSRSSE--
        I+ EK++FD+W  SH A KGLLNKLF +Y++ SYVFGKDCAT  RAE+F ++GSN P GY+ F  D   + + P MYS GLNMSP+D+M  R +R SE  
Subjt:  IITEKDMFDNWVKSHLAVKGLLNKLFSYYNKLSYVFGKDCATVARAETFTNVGSNVPKGYEEFPTDDGNNVEIPMMYSQGLNMSPNDIMGPRPSRSSE--

Query:  ---------------------------------------------------EVISQLQGIPELSSRDRVRLMRILMRNVNDMKAFLLVPDELKLDYCTVI
                                                           E++ QL+ IPEL+  DR RLMRILMRNV+DMKAFL VPD +K  YC++I
Subjt:  ---------------------------------------------------EVISQLQGIPELSSRDRVRLMRILMRNVNDMKAFLLVPDELKLDYCTVI

Query:  LEEN
        L+EN
Subjt:  LEEN

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]4.7e-7349.83Show/hide
Query:  MASSSRAPKHLWTR-EESTLVECLMELVSAGGWKSDSGTFRLGYLAQLQRMMAEKLLGTNIQGSPTIDYQIKTLKKSFQAITEMCGSSYSGFGWNDEIKC
        MAS SRAPKH WT+ EE   VECL+ELVS+GGW+SD+GTF+ GYLAQLQRMMAEKL GTNIQ S TID  +K+LKK++ AI EM G S SGFGWN+E +C
Subjt:  MASSSRAPKHLWTR-EESTLVECLMELVSAGGWKSDSGTFRLGYLAQLQRMMAEKLLGTNIQGSPTIDYQIKTLKKSFQAITEMCGSSYSGFGWNDEIKC

Query:  IITEKDMFDNWVKSHLAVKGLLNKLFSYYNKLSYVFGKDCATVARAETFTNVGSNVPKGYEE-FPTDDGNNVEIPMMYSQGLNMSPNDIMGPRPSRSSE-
        II E+D+FD+W+KSH A KGLL+K F YY+ LSYVFGKD AT AR+ETF NVGSNV   + +  P  D ++ +IP MYSQG++MSP+++ G R  ++SE 
Subjt:  IITEKDMFDNWVKSHLAVKGLLNKLFSYYNKLSYVFGKDCATVARAETFTNVGSNVPKGYEE-FPTDDGNNVEIPMMYSQGLNMSPNDIMGPRPSRSSE-

Query:  ----------------------------------------------------EVISQLQGIPELSSRDRVRLMRILMRNVNDMKAFLLVPDELKLDYCTV
                                                            +V+ QLQ IP+L S+DR +LM+IL R++  ++ FL +P ELKL+YC +
Subjt:  ----------------------------------------------------EVISQLQGIPELSSRDRVRLMRILMRNVNDMKAFLLVPDELKLDYCTV

Query:  ILE
        +L+
Subjt:  ILE

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859532.3e-7349.83Show/hide
Query:  MASSSRAPKHLWTR-EESTLVECLMELVSAGGWKSDSGTFRLGYLAQLQRMMAEKLLGTNIQGSPTIDYQIKTLKKSFQAITEMCGSSYSGFGWNDEIKC
        MAS SRAPKH WT+ EE   VECL+ELVS+GGW+SD+GTF+ GYLAQLQRMMAEKL GTNIQ S TID  +K+LKK++ AI EM G S SGFGWN+E +C
Subjt:  MASSSRAPKHLWTR-EESTLVECLMELVSAGGWKSDSGTFRLGYLAQLQRMMAEKLLGTNIQGSPTIDYQIKTLKKSFQAITEMCGSSYSGFGWNDEIKC

Query:  IITEKDMFDNWVKSHLAVKGLLNKLFSYYNKLSYVFGKDCATVARAETFTNVGSNVPKGYEE-FPTDDGNNVEIPMMYSQGLNMSPNDIMGPRPSRSSE-
        II E+D+FD+W+KSH A KGLL+K F YY+ LSYVFGKD AT AR+ETF NVGSNV   + +  P  D ++ +IP MYSQG++MSP+++ G R  ++SE 
Subjt:  IITEKDMFDNWVKSHLAVKGLLNKLFSYYNKLSYVFGKDCATVARAETFTNVGSNVPKGYEE-FPTDDGNNVEIPMMYSQGLNMSPNDIMGPRPSRSSE-

Query:  ----------------------------------------------------EVISQLQGIPELSSRDRVRLMRILMRNVNDMKAFLLVPDELKLDYCTV
                                                            +V+ QLQ IP+L S+DR +LM+IL R++  ++ FL +P ELKL+YC +
Subjt:  ----------------------------------------------------EVISQLQGIPELSSRDRVRLMRILMRNVNDMKAFLLVPDELKLDYCTV

Query:  ILE
        +L+
Subjt:  ILE

A0A5A7U0H7 Retrotransposon protein2.3e-7349.83Show/hide
Query:  MASSSRAPKHLWTR-EESTLVECLMELVSAGGWKSDSGTFRLGYLAQLQRMMAEKLLGTNIQGSPTIDYQIKTLKKSFQAITEMCGSSYSGFGWNDEIKC
        MAS SRAPKH WT+ EE   VECL+ELVS+GGW+SD+GTF+ GYLAQLQRMMAEKL GTNIQ S TID  +K+LKK++ AI EM G S SGFGWN+E +C
Subjt:  MASSSRAPKHLWTR-EESTLVECLMELVSAGGWKSDSGTFRLGYLAQLQRMMAEKLLGTNIQGSPTIDYQIKTLKKSFQAITEMCGSSYSGFGWNDEIKC

Query:  IITEKDMFDNWVKSHLAVKGLLNKLFSYYNKLSYVFGKDCATVARAETFTNVGSNVPKGYEE-FPTDDGNNVEIPMMYSQGLNMSPNDIMGPRPSRSSE-
        II E+D+FD+W+KSH A KGLL+K F YY+ LSYVFGKD AT AR+ETF NVGSNV   + +  P  D ++ +IP MYSQG++MSP+++ G R  ++SE 
Subjt:  IITEKDMFDNWVKSHLAVKGLLNKLFSYYNKLSYVFGKDCATVARAETFTNVGSNVPKGYEE-FPTDDGNNVEIPMMYSQGLNMSPNDIMGPRPSRSSE-

Query:  ----------------------------------------------------EVISQLQGIPELSSRDRVRLMRILMRNVNDMKAFLLVPDELKLDYCTV
                                                            +V+ QLQ IP+L S+DR +LM+IL R++  ++ FL +P ELKL+YC +
Subjt:  ----------------------------------------------------EVISQLQGIPELSSRDRVRLMRILMRNVNDMKAFLLVPDELKLDYCTV

Query:  ILE
        +L+
Subjt:  ILE

A0A5A7U216 Retrotransposon protein3.5e-7454.26Show/hide
Query:  MASSSRAPKHLWTREEST-LVECLMELVSAGGWKSDSGTFRLGYLAQLQRMMAEKLLGTNIQGSPTIDYQIKTLKKSFQAITEMCGSSYSGFGWNDEIKC
        M SSSR PKH WT+EE   LVECL+ELV+AGGW+SD+GTFR GYL QL RMMA K+ G NI  S TID +IK +K+ F A+ EM G + SGFGWNDE KC
Subjt:  MASSSRAPKHLWTREEST-LVECLMELVSAGGWKSDSGTFRLGYLAQLQRMMAEKLLGTNIQGSPTIDYQIKTLKKSFQAITEMCGSSYSGFGWNDEIKC

Query:  IITEKDMFDNWVKSHLAVKGLLNKLFSYYNKLSYVFGKDCATVARAETFTNVGSNVPKGYEEFPTDDGNNVEIPMMYSQGLNMSPNDIMGPRPSR-----
        II EK++FD+W  SH A KGLLNK F +Y++LSYVFGKD AT  RAE+FT++GSN P GY+ F  D   + + P MYS GLNMSP+D+M  R +R     
Subjt:  IITEKDMFDNWVKSHLAVKGLLNKLFSYYNKLSYVFGKDCATVARAETFTNVGSNVPKGYEEFPTDDGNNVEIPMMYSQGLNMSPNDIMGPRPSR-----

Query:  --------------------------SSEEVISQLQGIPELSSRDRVRLMRILMRNVNDMKAFLLVPDELKLDYCTVILEEN
                                  + +E++ QL+ IPEL+  DR RLMRI+MRNV+DMKAFL VPD +   YC++IL+EN
Subjt:  --------------------------SSEEVISQLQGIPELSSRDRVRLMRILMRNVNDMKAFLLVPDELKLDYCTVILEEN

A0A5A7UIE9 Retrotransposon protein4.1e-7557.25Show/hide
Query:  MASSSRAPKHLWTREEST-LVECLMELVSAGGWKSDSGTFRLGYLAQLQRMMAEKLLGTNIQGSPTIDYQIKTLKKSFQAITEMCGSSYSGFGWNDEIKC
        MASSSR PKH WT+EE   LVECL+ELV+AGGW+SD+GTFR  YL QL RMMA K+ G+N+  S TID +IK LK+ F AI EM G + SGFGWNDE KC
Subjt:  MASSSRAPKHLWTREEST-LVECLMELVSAGGWKSDSGTFRLGYLAQLQRMMAEKLLGTNIQGSPTIDYQIKTLKKSFQAITEMCGSSYSGFGWNDEIKC

Query:  IITEKDMFDNWVKSHLAVKGLLNKLFSYYNKLSYVFGKDCATVARAETFTNVGSNVPKGYEEFPTDDGNNVEIPMMYSQGLNMSPNDIMGPRPSRSSE--
        I+ EK++FDNWVKSHLA KGLL KLF +Y++LSYVFGKD AT   AE+F +VGSN   GYE F  +   +     MYSQ LNMSP+++MG R +R SE  
Subjt:  IITEKDMFDNWVKSHLAVKGLLNKLFSYYNKLSYVFGKDCATVARAETFTNVGSNVPKGYEEFPTDDGNNVEIPMMYSQGLNMSPNDIMGPRPSRSSE--

Query:  -----------------------EVISQLQGIPELSSRDRVRLMRILMRNVNDMKAFLLVPDELKLDYCTVILEEN
                               EV+ QL+ IPEL+  DR  LM ILMRNVNDMKAFL VPD +K  YC++IL+EN
Subjt:  -----------------------EVISQLQGIPELSSRDRVRLMRILMRNVNDMKAFLLVPDELKLDYCTVILEEN

A0A5A7VC47 Retrotransposon protein1.9e-7250.99Show/hide
Query:  MASSSRAPKHLWTREEST-LVECLMELVSAGGWKSDSGTFRLGYLAQLQRMMAEKLLGTNIQGSPTIDYQIKTLKKSFQAITEMCGSSYSGFGWNDEIKC
        M SSSR PKH WT+EE   LV CL+ELV+AGGW+SD+GTFR GYL QL RMMA K+ G NI  S TID +IK +K+ F A+ EM G +YSGF WNDE KC
Subjt:  MASSSRAPKHLWTREEST-LVECLMELVSAGGWKSDSGTFRLGYLAQLQRMMAEKLLGTNIQGSPTIDYQIKTLKKSFQAITEMCGSSYSGFGWNDEIKC

Query:  IITEKDMFDNWVKSHLAVKGLLNKLFSYYNKLSYVFGKDCATVARAETFTNVGSNVPKGYEEFPTDDGNNVEIPMMYSQGLNMSPNDIMGPRPSRSSE--
        I+ EK++FD+W  SH A KGLLNKLF +Y++ SYVFGKDCAT  RAE+F ++GSN P GY+ F  D   + + P MYS GLNMSP+D+M  R +R SE  
Subjt:  IITEKDMFDNWVKSHLAVKGLLNKLFSYYNKLSYVFGKDCATVARAETFTNVGSNVPKGYEEFPTDDGNNVEIPMMYSQGLNMSPNDIMGPRPSRSSE--

Query:  ---------------------------------------------------EVISQLQGIPELSSRDRVRLMRILMRNVNDMKAFLLVPDELKLDYCTVI
                                                           E++ QL+ IPEL+  DR RLMRILMRNV+DMKAFL VPD +K  YC++I
Subjt:  ---------------------------------------------------EVISQLQGIPELSSRDRVRLMRILMRNVNDMKAFLLVPDELKLDYCTVI

Query:  LEEN
        L+EN
Subjt:  LEEN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAGTTCGTCACGAGCGCCTAAACACTTGTGGACGAGAGAGGAGTCCACCCTGGTTGAGTGCTTGATGGAGTTGGTCTCTGCTGGTGGTTGGAAGTCGGACAGCGG
GACCTTTAGACTCGGTTATCTGGCACAGCTACAGAGAATGATGGCTGAGAAGCTACTAGGAACTAACATCCAGGGTTCCCCGACTATTGACTATCAGATAAAGACCCTCA
AGAAGTCATTCCAGGCCATAACAGAAATGTGCGGCTCATCGTACAGTGGGTTCGGTTGGAACGATGAAATAAAGTGCATCATCACAGAGAAGGATATGTTCGACAATTGG
GTGAAGAGCCATCTTGCTGTTAAGGGCCTTCTAAACAAATTGTTTTCCTATTACAACAAGCTGAGCTACGTGTTTGGGAAAGATTGTGCTACAGTAGCACGCGCGGAGAC
GTTCACCAATGTGGGATCGAATGTGCCTAAAGGGTACGAGGAATTTCCCACTGATGATGGAAACAATGTGGAGATCCCTATGATGTACAGTCAAGGACTCAACATGTCGC
CTAACGACATCATGGGCCCACGACCCAGTCGCTCGAGTGAGGAAGTCATTAGCCAGTTGCAGGGGATCCCTGAATTGAGTTCTCGCGACAGGGTGCGCCTTATGCGGATA
CTTATGCGCAATGTGAATGACATGAAAGCATTCTTGTTGGTACCCGATGAGCTTAAACTGGACTACTGCACGGTCATTCTCGAAGAGAACGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAGTTCGTCACGAGCGCCTAAACACTTGTGGACGAGAGAGGAGTCCACCCTGGTTGAGTGCTTGATGGAGTTGGTCTCTGCTGGTGGTTGGAAGTCGGACAGCGG
GACCTTTAGACTCGGTTATCTGGCACAGCTACAGAGAATGATGGCTGAGAAGCTACTAGGAACTAACATCCAGGGTTCCCCGACTATTGACTATCAGATAAAGACCCTCA
AGAAGTCATTCCAGGCCATAACAGAAATGTGCGGCTCATCGTACAGTGGGTTCGGTTGGAACGATGAAATAAAGTGCATCATCACAGAGAAGGATATGTTCGACAATTGG
GTGAAGAGCCATCTTGCTGTTAAGGGCCTTCTAAACAAATTGTTTTCCTATTACAACAAGCTGAGCTACGTGTTTGGGAAAGATTGTGCTACAGTAGCACGCGCGGAGAC
GTTCACCAATGTGGGATCGAATGTGCCTAAAGGGTACGAGGAATTTCCCACTGATGATGGAAACAATGTGGAGATCCCTATGATGTACAGTCAAGGACTCAACATGTCGC
CTAACGACATCATGGGCCCACGACCCAGTCGCTCGAGTGAGGAAGTCATTAGCCAGTTGCAGGGGATCCCTGAATTGAGTTCTCGCGACAGGGTGCGCCTTATGCGGATA
CTTATGCGCAATGTGAATGACATGAAAGCATTCTTGTTGGTACCCGATGAGCTTAAACTGGACTACTGCACGGTCATTCTCGAAGAGAACGCTTGA
Protein sequenceShow/hide protein sequence
MASSSRAPKHLWTREESTLVECLMELVSAGGWKSDSGTFRLGYLAQLQRMMAEKLLGTNIQGSPTIDYQIKTLKKSFQAITEMCGSSYSGFGWNDEIKCIITEKDMFDNW
VKSHLAVKGLLNKLFSYYNKLSYVFGKDCATVARAETFTNVGSNVPKGYEEFPTDDGNNVEIPMMYSQGLNMSPNDIMGPRPSRSSEEVISQLQGIPELSSRDRVRLMRI
LMRNVNDMKAFLLVPDELKLDYCTVILEENA