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PI0024910 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0024910
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description40S ribosomal protein S21
Genome locationchr06:5018720..5020779
RNA-Seq ExpressionPI0024910
SyntenyPI0024910
Gene Ontology termsGO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0000461 - endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0006412 - translation (biological process)
GO:0006470 - protein dephosphorylation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0004722 - protein serine/threonine phosphatase activity (molecular function)
InterPro domainsIPR001931 - Ribosomal protein S21e
IPR018279 - Ribosomal protein S21e, conserved site
IPR038579 - Ribosomal protein S21e superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134210.2 40S ribosomal protein S21-2 [Cucumis sativus]3.6e-3898.78Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYSGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIY+GQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYSGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ

XP_004143089.1 40S ribosomal protein S21-2 [Cucumis sativus]1.0e-3797.56Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYSGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIY+GQFSTFALCGFIRAQGDADSALDRLWQKKK EVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYSGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ

XP_022138287.1 40S ribosomal protein S21-2 [Momordica charantia]8.0e-3897.56Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYSGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGH+DENGIY+GQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYSGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ

XP_022930553.1 40S ribosomal protein S21-2-like [Cucurbita moschata]1.0e-3796.34Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYSGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQIN+GHLDENGIY+GQFSTFALCG+IRAQGDADSALDRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYSGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ

XP_022959410.1 40S ribosomal protein S21-2 isoform X2 [Cucurbita moschata]1.8e-3795.12Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYSGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQIN+GHLDENGIY+GQFSTFALCG+IRAQGDADSA+DRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYSGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ

TrEMBL top hitse value%identityAlignment
A0A0A0L7W3 40S ribosomal protein S211.7e-3898.78Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYSGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIY+GQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYSGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ

A0A1S4DSM1 40S ribosomal protein S211.7e-3898.78Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYSGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIY+GQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYSGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ

A0A5D3CXC9 40S ribosomal protein S211.7e-3898.78Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYSGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIY+GQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYSGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ

A0A6J1CCM4 40S ribosomal protein S213.9e-3897.56Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYSGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGH+DENGIY+GQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYSGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ

A0A6J1KDN2 40S ribosomal protein S215.0e-3896.34Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYSGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQIN+GHLDENGIY+GQFSTFALCG+IRAQGDADSALDRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYSGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ

SwissProt top hitse value%identityAlignment
P35687 40S ribosomal protein S218.5e-3580.49Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYSGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ
        MQNEEG++ +LY+PRKCSATNR+IT+KDHASVQINIGH+DENG+Y G+F+TFAL GFIRAQGDADSALDRLWQK+K EV+QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYSGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ

Q3E902 40S ribosomal protein S21-29.1e-3785.19Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYSGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQ
        MQNEEG++TELYIPRKCSATNRLITSKDHASVQ+NIGHLD NG+Y+GQF+TFALCGF+RAQGDADS +DRLWQKKKVE +Q
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYSGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQ

Q41852 40S ribosomal protein S217.2e-3479.01Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYSGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQ
        MQNEEGK  +LY+PRKCSATNR+IT+KDHASVQINIGHLD NG+Y G F+TFAL GF+RAQGDADS+LDRLWQKKK E++Q
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYSGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQ

Q9M337 40S ribosomal protein S21-11.3e-3580.49Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYSGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ
        M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGHLD NG+Y+GQF+TFALCGF+RAQGDADS +DRLWQKKKVE +QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYSGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ

Q9SMI2 40S ribosomal protein S211.0e-2466.67Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDEN-GIYSGQFSTFALCGFIRAQGDADSALDRLWQK
        MQN+EGKI +LYIPRKCSATNRLI++ DHA+VQIN+GH+D N G+Y+G ++TFALCGF+R+ G++D+AL+RL  K
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDEN-GIYSGQFSTFALCGFIRAQGDADSALDRLWQK

Arabidopsis top hitse value%identityAlignment
AT3G53890.1 Ribosomal protein S21e9.4e-3780.49Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYSGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ
        M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGHLD NG+Y+GQF+TFALCGF+RAQGDADS +DRLWQKKKVE +QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYSGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ

AT3G53890.2 Ribosomal protein S21e9.4e-3780.49Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYSGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ
        M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGHLD NG+Y+GQF+TFALCGF+RAQGDADS +DRLWQKKKVE +QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYSGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ

AT5G27700.1 Ribosomal protein S21e6.5e-3885.19Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYSGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQ
        MQNEEG++TELYIPRKCSATNRLITSKDHASVQ+NIGHLD NG+Y+GQF+TFALCGF+RAQGDADS +DRLWQKKKVE +Q
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYSGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGAACGAAGAGGGTAAAATCACAGAGCTTTATATTCCCAGAAAATGCTCCGCAACGAATCGGCTGATTACTTCCAAGGACCATGCTTCTGTTCAGATCAACATTGG
GCATTTGGATGAGAATGGCATCTACAGTGGGCAATTTTCTACTTTTGCTCTCTGTGGTTTCATTCGGGCGCAGGGAGATGCTGACAGTGCACTAGATCGTCTCTGGCAGA
AGAAGAAAGTCGAAGTGCGTCAACAATAG
mRNA sequenceShow/hide mRNA sequence
TTGTCTTCTAAATTTTAGGGTTTCTTCAGCACGCCTCTTTCTCCCTTTCGGATAGTTCGTTTCCTCTGTTGTGCTTGCGGGTTGATTCACTTATCAAGATGCAGAACGAA
GAGGGTAAAATCACAGAGCTTTATATTCCCAGAAAATGCTCCGCAACGAATCGGCTGATTACTTCCAAGGACCATGCTTCTGTTCAGATCAACATTGGGCATTTGGATGA
GAATGGCATCTACAGTGGGCAATTTTCTACTTTTGCTCTCTGTGGTTTCATTCGGGCGCAGGGAGATGCTGACAGTGCACTAGATCGTCTCTGGCAGAAGAAGAAAGTCG
AAGTGCGTCAACAATAGATGATTGTGCCATTCTGGTTCATCTCTATATCAAAGTTTTCAAGTATAGAGATACACTTTTAAGATTTTTTGAACCACTCGTAGTTAAGTAGT
TTCTTTTGACAATTTAAACTCATTAGTTTCTTTAAATGCAAACTCAACTTCATTGAGTCTGGACAAGCTCTGATGAGTCAAAAAGGACCAAAACTAAGTTGAATGAAATA
TGTTGAAGTTCATTTTCCATTAAAGATATTTTATCAGAGACTCTTTCAATCC
Protein sequenceShow/hide protein sequence
MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYSGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ