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PI0024912 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0024912
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages;
Genome locationchr10:2779824..2782619
RNA-Seq ExpressionPI0024912
SyntenyPI0024912
Gene Ontology termsGO:0000492 - box C/D snoRNP assembly (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6578837.1 hypothetical protein SDJN03_23285, partial [Cucurbita argyrosperma subsp. sororia]6.4e-1575.81Show/hide
Query:  MEQELKEILAKQAELGVEVAKIPPEYLSYSEKHDNRKQRGDPSTLGEEAKGASIGKEKSQNR
        + QELKEILAKQAELGVEVA+IP EYLSYSEK D+ K+ GD ST+GEEA+GAS GKEK++NR
Subjt:  MEQELKEILAKQAELGVEVAKIPPEYLSYSEKHDNRKQRGDPSTLGEEAKGASIGKEKSQNR
XP_004140922.1 uncharacterized protein LOC101213190 [Cucumis sativus]8.0e-1885.48Show/hide
Query:  MEQELKEILAKQAELGVEVAKIPPEYLSYSEKHDNRKQRGDPSTLGEEAKGASIGKEKSQNR
        + QELKEILAKQAELGVEVA+IPPEYLSYSEKHDNRKQRG  STLGEEA+ ASI KE SQNR
Subjt:  MEQELKEILAKQAELGVEVAKIPPEYLSYSEKHDNRKQRGDPSTLGEEAKGASIGKEKSQNR
XP_008456637.1 PREDICTED: uncharacterized protein LOC103496534 isoform X2 [Cucumis melo]3.8e-2090.32Show/hide
Query:  MEQELKEILAKQAELGVEVAKIPPEYLSYSEKHDNRKQRGDPSTLGEEAKGASIGKEKSQNR
        + QELKEILAKQAELGVEVA+IPPEYLSYSEKHDNRKQRG PSTLGEEA GASI KEKSQNR
Subjt:  MEQELKEILAKQAELGVEVAKIPPEYLSYSEKHDNRKQRGDPSTLGEEAKGASIGKEKSQNR
XP_016902016.1 PREDICTED: uncharacterized protein LOC103496534 isoform X1 [Cucumis melo]3.8e-2090.32Show/hide
Query:  MEQELKEILAKQAELGVEVAKIPPEYLSYSEKHDNRKQRGDPSTLGEEAKGASIGKEKSQNR
        + QELKEILAKQAELGVEVA+IPPEYLSYSEKHDNRKQRG PSTLGEEA GASI KEKSQNR
Subjt:  MEQELKEILAKQAELGVEVAKIPPEYLSYSEKHDNRKQRGDPSTLGEEAKGASIGKEKSQNR
XP_038885674.1 uncharacterized protein LOC120075982 [Benincasa hispida]5.6e-1983.87Show/hide
Query:  MEQELKEILAKQAELGVEVAKIPPEYLSYSEKHDNRKQRGDPSTLGEEAKGASIGKEKSQNR
        + +ELKEILAKQAELGVEVA+IPPEYLSYSEKH+NRK R DPSTLGEE KGAS+GKEKS+NR
Subjt:  MEQELKEILAKQAELGVEVAKIPPEYLSYSEKHDNRKQRGDPSTLGEEAKGASIGKEKSQNR
TrEMBL top hitse value%identityAlignment
A0A0A0KE87 NUFIP1 domain-containing protein3.9e-1885.48Show/hide
Query:  MEQELKEILAKQAELGVEVAKIPPEYLSYSEKHDNRKQRGDPSTLGEEAKGASIGKEKSQNR
        + QELKEILAKQAELGVEVA+IPPEYLSYSEKHDNRKQRG  STLGEEA+ ASI KE SQNR
Subjt:  MEQELKEILAKQAELGVEVAKIPPEYLSYSEKHDNRKQRGDPSTLGEEAKGASIGKEKSQNR
A0A1S3C3B2 uncharacterized protein LOC103496534 isoform X21.9e-2090.32Show/hide
Query:  MEQELKEILAKQAELGVEVAKIPPEYLSYSEKHDNRKQRGDPSTLGEEAKGASIGKEKSQNR
        + QELKEILAKQAELGVEVA+IPPEYLSYSEKHDNRKQRG PSTLGEEA GASI KEKSQNR
Subjt:  MEQELKEILAKQAELGVEVAKIPPEYLSYSEKHDNRKQRGDPSTLGEEAKGASIGKEKSQNR
A0A1S4E1B3 uncharacterized protein LOC103496534 isoform X11.9e-2090.32Show/hide
Query:  MEQELKEILAKQAELGVEVAKIPPEYLSYSEKHDNRKQRGDPSTLGEEAKGASIGKEKSQNR
        + QELKEILAKQAELGVEVA+IPPEYLSYSEKHDNRKQRG PSTLGEEA GASI KEKSQNR
Subjt:  MEQELKEILAKQAELGVEVAKIPPEYLSYSEKHDNRKQRGDPSTLGEEAKGASIGKEKSQNR
A0A5A7SKM0 Putative basic-leucine zipper transcription factor F isoform X11.9e-2090.32Show/hide
Query:  MEQELKEILAKQAELGVEVAKIPPEYLSYSEKHDNRKQRGDPSTLGEEAKGASIGKEKSQNR
        + QELKEILAKQAELGVEVA+IPPEYLSYSEKHDNRKQRG PSTLGEEA GASI KEKSQNR
Subjt:  MEQELKEILAKQAELGVEVAKIPPEYLSYSEKHDNRKQRGDPSTLGEEAKGASIGKEKSQNR
A0A6J1JY42 uncharacterized protein LOC1114889343.1e-1575.81Show/hide
Query:  MEQELKEILAKQAELGVEVAKIPPEYLSYSEKHDNRKQRGDPSTLGEEAKGASIGKEKSQNR
        + QELKEILAKQAELGVEVA+IP EYLSYSEK D+ K+ GD ST+GEEA+GAS GKEK++NR
Subjt:  MEQELKEILAKQAELGVEVAKIPPEYLSYSEKHDNRKQRGDPSTLGEEAKGASIGKEKSQNR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G18440.1 CONTAINS InterPro DOMAIN/s: Nuclear fragile X mental retardation-interacting protein 1, conserved region (InterPro:IPR019496); Has 1333 Blast hits to 1211 proteins in 205 species: Archae - 0; Bacteria - 137; Metazoa - 339; Fungi - 162; Plants - 70; Viruses - 6; Other Eukaryotes - 619 (source: NCBI BLink).1.1e-0460.61Show/hide
Query:  QELKEILAKQAELGVEVAKIPPEYLSYSEKHDN
        Q+L+E+LAKQAELGVEVA++P  YLS +++  N
Subjt:  QELKEILAKQAELGVEVAKIPPEYLSYSEKHDN
AT5G18440.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear fragile X mental retardation-interacting protein 1, conserved region (InterPro:IPR019496); Has 1333 Blast hits to 1211 proteins in 205 species: Archae - 0; Bacteria - 137; Metazoa - 339; Fungi - 162; Plants - 70; Viruses - 6; Other Eukaryotes - 619 (source: NCBI BLink).1.1e-0460.61Show/hide
Query:  QELKEILAKQAELGVEVAKIPPEYLSYSEKHDN
        Q+L+E+LAKQAELGVEVA++P  YLS +++  N
Subjt:  QELKEILAKQAELGVEVAKIPPEYLSYSEKHDN

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACAGGAACTCAAAGAGATTTTAGCAAAGCAGGCTGAATTAGGAGTGGAAGTTGCAAAAATACCACCAGAGTATCTCTCATATTCAGAGAAACATGACAATCGAAA
ACAACGTGGAGATCCATCGACATTAGGAGAGGAAGCCAAAGGAGCCTCAATAGGGAAAGAAAAATCTCAAAACAGGAGTTTAGTGATCCCTGTGATGCTGATGATGCAAG
ATATAAGTTTAAATGGACGGGATGTCCATGGAAGTCGAATCATTATGGAAATAGCTAAAGGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAACAGGAACTCAAAGAGATTTTAGCAAAGCAGGCTGAATTAGGAGTGGAAGTTGCAAAAATACCACCAGAGTATCTCTCATATTCAGAGAAACATGACAATCGAAA
ACAACGTGGAGATCCATCGACATTAGGAGAGGAAGCCAAAGGAGCCTCAATAGGGAAAGAAAAATCTCAAAACAGGAGTTTAGTGATCCCTGTGATGCTGATGATGCAAG
ATATAAGTTTAAATGGACGGGATGTCCATGGAAGTCGAATCATTATGGAAATAGCTAAAGGGTGA
Protein sequenceShow/hide protein sequence
MEQELKEILAKQAELGVEVAKIPPEYLSYSEKHDNRKQRGDPSTLGEEAKGASIGKEKSQNRSLVIPVMLMMQDISLNGRDVHGSRIIMEIAKG