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PI0024920 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0024920
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationchr04:27448548..27450105
RNA-Seq ExpressionPI0024920
SyntenyPI0024920
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025798.1 uncharacterized protein E6C27_scaffold34G00480 [Cucumis melo var. makuwa]3.1e-0436.78Show/hide
Query:  SVVNYSDTPSVASKAKHHGSVPLSNNAAPGGFVPLVLLLPSILFSQHYSMLTAHDASGLAPKTLNLSYPLFLGSHVPDIAYPMRPPR
        ++ N+  +   +S  +H G+  +  +      +PL     S+L   + ++LTA DA G   KTL+LSY LF GSHVPD+ + MRP R
Subjt:  SVVNYSDTPSVASKAKHHGSVPLSNNAAPGGFVPLVLLLPSILFSQHYSMLTAHDASGLAPKTLNLSYPLFLGSHVPDIAYPMRPPR

KAA0062797.1 uncharacterized protein E6C27_scaffold357G00140 [Cucumis melo var. makuwa]1.8e-0447.62Show/hide
Query:  VPLVLLLPSILFSQHYSMLTAHDASGLAPKTLNLSYPLFLGSHVPDIAYPMRP---PRREDLE
        +PL     S+L   +  +LT +D  G  PKTL+LSY LF GSHVPDI + MRP   PR  D++
Subjt:  VPLVLLLPSILFSQHYSMLTAHDASGLAPKTLNLSYPLFLGSHVPDIAYPMRP---PRREDLE

KAA0063409.1 uncharacterized protein E6C27_scaffold508G00450 [Cucumis melo var. makuwa]1.1e-0630Show/hide
Query:  PDRQPRMHRNASGTDYCTLGSNHTMHEATSTSDSFVH-SRPHIVKPMRDSVFPNFSTR--VPMTSIGHLGIDSSVVNYSDTPSVASKAKHHGSVP-----
        P R P      S +D     SN ++H+++ TS+   H    H+V P    +  + + R  +P+  I   G+   +   S   S  S A H   VP     
Subjt:  PDRQPRMHRNASGTDYCTLGSNHTMHEATSTSDSFVH-SRPHIVKPMRDSVFPNFSTR--VPMTSIGHLGIDSSVVNYSDTPSVASKAKHHGSVP-----

Query:  LSNNAAPGGFVPLVLLLPSILFSQHYSMLTAHDASGLAPKTLNLSYPLFLGSHVPDIAYPMRPPR------REDLELSAD
         +++++    VP +  L  ++   + ++LT HDA G  PKTL+LSY LF G HVPD+ +  RP R       ED+ +S +
Subjt:  LSNNAAPGGFVPLVLLLPSILFSQHYSMLTAHDASGLAPKTLNLSYPLFLGSHVPDIAYPMRPPR------REDLELSAD

KAA0063935.1 uncharacterized protein E6C27_scaffold616G00780 [Cucumis melo var. makuwa]4.3e-0654.55Show/hide
Query:  VPLVLLLPSILFSQHYSMLTAHDASGLAPKTLNLSYPLFLGSHVPDIAYPMRPPR
        +PL    PS+L   +  +LTA+DA GL PKT +LSY LF GSHVPD+ + MRP R
Subjt:  VPLVLLLPSILFSQHYSMLTAHDASGLAPKTLNLSYPLFLGSHVPDIAYPMRPPR

KAA0067004.1 uncharacterized protein E6C27_scaffold38G00370 [Cucumis melo var. makuwa]3.1e-0446.15Show/hide
Query:  VPLVLLLPSILFSQHYSMLTAHDASGLAPKTLNLSYPLFLGSHVPDIAYPMRPPRREDLELSADV
        +PL+L   S+L   +  +LT  DA GL  KTL+LSY  F  SHVPDI + MRP R   +  + DV
Subjt:  VPLVLLLPSILFSQHYSMLTAHDASGLAPKTLNLSYPLFLGSHVPDIAYPMRPPRREDLELSADV

TrEMBL top hitse value%identityAlignment
A0A5A7V746 Uncharacterized protein8.8e-0547.62Show/hide
Query:  VPLVLLLPSILFSQHYSMLTAHDASGLAPKTLNLSYPLFLGSHVPDIAYPMRP---PRREDLE
        +PL     S+L   +  +LT +D  G  PKTL+LSY LF GSHVPDI + MRP   PR  D++
Subjt:  VPLVLLLPSILFSQHYSMLTAHDASGLAPKTLNLSYPLFLGSHVPDIAYPMRP---PRREDLE

A0A5A7VD06 Uncharacterized protein5.5e-0730Show/hide
Query:  PDRQPRMHRNASGTDYCTLGSNHTMHEATSTSDSFVH-SRPHIVKPMRDSVFPNFSTR--VPMTSIGHLGIDSSVVNYSDTPSVASKAKHHGSVP-----
        P R P      S +D     SN ++H+++ TS+   H    H+V P    +  + + R  +P+  I   G+   +   S   S  S A H   VP     
Subjt:  PDRQPRMHRNASGTDYCTLGSNHTMHEATSTSDSFVH-SRPHIVKPMRDSVFPNFSTR--VPMTSIGHLGIDSSVVNYSDTPSVASKAKHHGSVP-----

Query:  LSNNAAPGGFVPLVLLLPSILFSQHYSMLTAHDASGLAPKTLNLSYPLFLGSHVPDIAYPMRPPR------REDLELSAD
         +++++    VP +  L  ++   + ++LT HDA G  PKTL+LSY LF G HVPD+ +  RP R       ED+ +S +
Subjt:  LSNNAAPGGFVPLVLLLPSILFSQHYSMLTAHDASGLAPKTLNLSYPLFLGSHVPDIAYPMRPPR------REDLELSAD

A0A5A7VDH4 Uncharacterized protein2.1e-0654.55Show/hide
Query:  VPLVLLLPSILFSQHYSMLTAHDASGLAPKTLNLSYPLFLGSHVPDIAYPMRPPR
        +PL    PS+L   +  +LTA+DA GL PKT +LSY LF GSHVPD+ + MRP R
Subjt:  VPLVLLLPSILFSQHYSMLTAHDASGLAPKTLNLSYPLFLGSHVPDIAYPMRPPR

A0A5A7VI17 Uncharacterized protein1.5e-0446.15Show/hide
Query:  VPLVLLLPSILFSQHYSMLTAHDASGLAPKTLNLSYPLFLGSHVPDIAYPMRPPRREDLELSADV
        +PL+L   S+L   +  +LT  DA GL  KTL+LSY  F  SHVPDI + MRP R   +  + DV
Subjt:  VPLVLLLPSILFSQHYSMLTAHDASGLAPKTLNLSYPLFLGSHVPDIAYPMRPPRREDLELSADV

A0A5D3CEK6 Uncharacterized protein1.5e-0436.78Show/hide
Query:  SVVNYSDTPSVASKAKHHGSVPLSNNAAPGGFVPLVLLLPSILFSQHYSMLTAHDASGLAPKTLNLSYPLFLGSHVPDIAYPMRPPR
        ++ N+  +   +S  +H G+  +  +      +PL     S+L   + ++LTA DA G   KTL+LSY LF GSHVPD+ + MRP R
Subjt:  SVVNYSDTPSVASKAKHHGSVPLSNNAAPGGFVPLVLLLPSILFSQHYSMLTAHDASGLAPKTLNLSYPLFLGSHVPDIAYPMRPPR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGCTACTCGCAAAGGAATCTATCAGTATACTGTCTCGGATTATCCTATTGATGGTCAGGGTAGGTTTGTTGCTTCAGATGTTTCGATTGGTGTTTCTGAAGCTCA
AACACGAGGAGTTTCTTTGCCTCTTTCTAAGCGTCTCAAACTAGTCCCTGACCGACAACCTAGGATGCATCGAAATGCTTCAGGTACTGATTATTGTACTCTCGGTTCTA
ATCATACAATGCATGAGGCTACTTCTACTTCTGATTCTTTTGTACACTCTCGGCCTCACATCGTTAAACCTATGAGGGACTCTGTTTTTCCTAACTTTTCTACTCGAGTT
CCTATGACTTCTATAGGTCACCTTGGCATTGATTCTTCAGTCGTTAACTATAGTGATACGCCTAGTGTTGCGTCAAAAGCTAAGCACCATGGGTCCGTTCCCTTGTCCAA
TAATGCTGCTCCTGGTGGTTTTGTGCCCCTGGTGCTGCTGCTTCCAAGCATTCTGTTTTCTCAACATTACTCTATGTTGACTGCACATGATGCTTCTGGCCTTGCCCCTA
AGACTCTCAATCTTAGCTACCCTTTGTTTCTGGGGTCCCATGTTCCTGATATTGCCTATCCTATGCGGCCTCCACGTCGTGAAGATCTTGAGCTTTCTGCGGATGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTGCTACTCGCAAAGGAATCTATCAGTATACTGTCTCGGATTATCCTATTGATGGTCAGGGTAGGTTTGTTGCTTCAGATGTTTCGATTGGTGTTTCTGAAGCTCA
AACACGAGGAGTTTCTTTGCCTCTTTCTAAGCGTCTCAAACTAGTCCCTGACCGACAACCTAGGATGCATCGAAATGCTTCAGGTACTGATTATTGTACTCTCGGTTCTA
ATCATACAATGCATGAGGCTACTTCTACTTCTGATTCTTTTGTACACTCTCGGCCTCACATCGTTAAACCTATGAGGGACTCTGTTTTTCCTAACTTTTCTACTCGAGTT
CCTATGACTTCTATAGGTCACCTTGGCATTGATTCTTCAGTCGTTAACTATAGTGATACGCCTAGTGTTGCGTCAAAAGCTAAGCACCATGGGTCCGTTCCCTTGTCCAA
TAATGCTGCTCCTGGTGGTTTTGTGCCCCTGGTGCTGCTGCTTCCAAGCATTCTGTTTTCTCAACATTACTCTATGTTGACTGCACATGATGCTTCTGGCCTTGCCCCTA
AGACTCTCAATCTTAGCTACCCTTTGTTTCTGGGGTCCCATGTTCCTGATATTGCCTATCCTATGCGGCCTCCACGTCGTGAAGATCTTGAGCTTTCTGCGGATGTTTGA
Protein sequenceShow/hide protein sequence
MVATRKGIYQYTVSDYPIDGQGRFVASDVSIGVSEAQTRGVSLPLSKRLKLVPDRQPRMHRNASGTDYCTLGSNHTMHEATSTSDSFVHSRPHIVKPMRDSVFPNFSTRV
PMTSIGHLGIDSSVVNYSDTPSVASKAKHHGSVPLSNNAAPGGFVPLVLLLPSILFSQHYSMLTAHDASGLAPKTLNLSYPLFLGSHVPDIAYPMRPPRREDLELSADV