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PI0024932 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0024932
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr12:16619207..16620344
RNA-Seq ExpressionPI0024932
SyntenyPI0024932
Gene Ontology termsNA
InterPro domainsIPR024752 - Myb/SANT-like domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN34114.1 retrotransposon protein [Cucumis melo subsp. melo]6.6e-6752.73Show/hide
Query:  DVSDDVDEGDSTYATTGSEDIHYIETSSAWSQWS-------MATSSRAQKHHWTKEEDATLVECLVELVSTDGWRSDNETFRPGYHSHLQKMMAERMSGH
        D+ D++DE DST+ATT ++DIHYIETS+ WSQW        M +SSR  KH WTKEE+A LVECLVELV+  GWRSDN TFRPGY + L +MMA ++ G 
Subjt:  DVSDDVDEGDSTYATTGSEDIHYIETSSAWSQWS-------MATSSRAQKHHWTKEEDATLVECLVELVSTDGWRSDNETFRPGYHSHLQKMMAERMSGH

Query:  NITASTIDCRIKTTKRAFQAISKMMGLMC----------------KLYDNWVKSHPVANGLLNKPFSHYDDLCYIFGRDRATGGRAETFVDVGSNVPAGY
        NI ASTID RIK  KR F A+++M G  C                +++D+W  SHP A GLLNK F HYD+L Y+FG+DRATGGRAE+F D+GSN P GY
Subjt:  NITASTIDCRIKTTKRAFQAISKMMGLMC----------------KLYDNWVKSHPVANGLLNKPFSHYDDLCYIFGRDRATGGRAETFVDVGSNVPAGY

Query:  -----DGLPTYD---GNDPGTGLSLDDIMGTRPSWASEGRASSSGSKRKWGGQASEATEIIRSAMEYANDQLKAI
             D +P  D      PG  +S DD+M TR +  SE R  SSGSKRK  G A+++ +I+R+A+EY N+QL  I
Subjt:  -----DGLPTYD---GNDPGTGLSLDDIMGTRPSWASEGRASSSGSKRKWGGQASEATEIIRSAMEYANDQLKAI

KAA0036924.1 retrotransposon protein [Cucumis melo var. makuwa]3.0e-6753.19Show/hide
Query:  DVSDDVDEGDSTYA-TTGSEDIHYIETSSAWSQ------------WSMATSSRAQKHHWTKEEDATLVECLVELVSTDGWRSDNETFRPGYHSHLQKMMA
        D  +D DEGDSTYA TT SEDI YIET++ WSQ            W M+TS+RA +H WT+EE+ TLVECL+ELVS  GW+SDN TFRPGY + L +MMA
Subjt:  DVSDDVDEGDSTYA-TTGSEDIHYIETSSAWSQ------------WSMATSSRAQKHHWTKEEDATLVECLVELVSTDGWRSDNETFRPGYHSHLQKMMA

Query:  ERMSGHNITAST-IDCRIKTTKRAFQAISKMMGLMC----------------KLYDNWVKSHPVANGLLNKPFSHYDDLCYIFGRDRATGGRAETFVDVG
        E++ G  + A+T IDCRIKT KR FQAI++M G  C                +L+DNWV+SHP A GLLNKPF +YD+L Y+F RDRATG  AETF DVG
Subjt:  ERMSGHNITAST-IDCRIKTTKRAFQAISKMMGLMC----------------KLYDNWVKSHPVANGLLNKPFSHYDDLCYIFGRDRATGGRAETFVDVG

Query:  SNVP-AGYDGLPTYDGND-------PGTGLSLDDIMGTRPSWASEGRASSSGSKRKWGGQASEATEIIRSAMEYANDQLKAI
        SN P  GYD     DGN+        G  +S DD+  +RPS ASEGR  SSGSKRK G Q     E I  A++  N+QL+ I
Subjt:  SNVP-AGYDGLPTYDGND-------PGTGLSLDDIMGTRPSWASEGRASSSGSKRKWGGQASEATEIIRSAMEYANDQLKAI

KAA0042500.1 retrotransposon protein [Cucumis melo var. makuwa]8.7e-5954.89Show/hide
Query:  MATSSRAQKHHWTKEEDATLVECLVELVSTDGWRSDNETFRPGYHSHLQKMMAERMSGHNITAST-IDCRIKTTKRAFQAISKMMGLMC-----------
        M+TS+RA +H WTKEE+ TLVECL+ELVS  GW+SDN TFRPGY + L +MMAE++ G  + A+T IDCRIKT KR FQAI++M G  C           
Subjt:  MATSSRAQKHHWTKEEDATLVECLVELVSTDGWRSDNETFRPGYHSHLQKMMAERMSGHNITAST-IDCRIKTTKRAFQAISKMMGLMC-----------

Query:  -----KLYDNWVKSHPVANGLLNKPFSHYDDLCYIFGRDRATGGRAETFVDVGSNVP-AGYDGLPTYDGND-------PGTGLSLDDIMGTRPSWASEGR
             +L+DNWV+SHP A GLLNKPF +YD+L Y+FGRDRATG  AETF DVGSN P  GYD     DGN+        G  LS DD+  +RPS ASEGR
Subjt:  -----KLYDNWVKSHPVANGLLNKPFSHYDDLCYIFGRDRATGGRAETFVDVGSNVP-AGYDGLPTYDGND-------PGTGLSLDDIMGTRPSWASEGR

Query:  ASSSGSKRKWGGQASEATEIIRSAMEYANDQLKAI
          SSGSKRK G Q     E I  A++  N+QL+ I
Subjt:  ASSSGSKRKWGGQASEATEIIRSAMEYANDQLKAI

KAA0060558.1 retrotransposon protein [Cucumis melo var. makuwa]3.2e-6147.7Show/hide
Query:  ELQACRKNDVSDDVDEGDSTYATTGSEDIHYIETSSAWSQWS-------MATSSRAQKHHWTKEEDATLVECLVELVSTDGWRSDNETFRPGYHSHLQKM
        E+  C   D+ DD+DE DST+AT+  +DIHYIE S+ W+ W        +A+SSR  KH+WTKEE+A LVECL+ELV+  GWR DNETFRP Y + L +M
Subjt:  ELQACRKNDVSDDVDEGDSTYATTGSEDIHYIETSSAWSQWS-------MATSSRAQKHHWTKEEDATLVECLVELVSTDGWRSDNETFRPGYHSHLQKM

Query:  MAERMSGHNITASTIDCRIKTTKRAFQAISKMMGLMC----------------KLYDNWVKSHPVANGLLNKPFSHYDDLCYIFGRDRATGGRAETFVDV
        M  ++ G NI A TID RIK  KR F AI++M G  C                +++D+WVK+HP A GLLNK FSHY+ L Y+FG+DRA  G  E+F+DV
Subjt:  MAERMSGHNITASTIDCRIKTTKRAFQAISKMMGLMC----------------KLYDNWVKSHPVANGLLNKPFSHYDDLCYIFGRDRATGGRAETFVDV

Query:  GSNVPAGYDGLPTYDGND--------PGTGLSLDDIMGTRPSWASEGRASSSGSKRKWGGQASEATEIIRSAMEYANDQLKAI
         SN   GY+        D         G  +S D++MGTR +  SEGR  SSGSKRK GGQA+++ +++R+ +EY N+QL  I
Subjt:  GSNVPAGYDGLPTYDGND--------PGTGLSLDDIMGTRPSWASEGRASSSGSKRKWGGQASEATEIIRSAMEYANDQLKAI

TYK20986.1 retrotransposon protein [Cucumis melo var. makuwa]5.1e-5954.89Show/hide
Query:  MATSSRAQKHHWTKEEDATLVECLVELVSTDGWRSDNETFRPGYHSHLQKMMAERMSGHNITAST-IDCRIKTTKRAFQAISKMMGLMC-----------
        M+TS+RA +H WTKEE+ TLVECL+ELVS  GW+SDN TFRPGY + L ++MAE++ G  + A+T IDCRIKT KR FQAI++M G  C           
Subjt:  MATSSRAQKHHWTKEEDATLVECLVELVSTDGWRSDNETFRPGYHSHLQKMMAERMSGHNITAST-IDCRIKTTKRAFQAISKMMGLMC-----------

Query:  -----KLYDNWVKSHPVANGLLNKPFSHYDDLCYIFGRDRATGGRAETFVDVGSNVP-AGYDGLPTYDGND-------PGTGLSLDDIMGTRPSWASEGR
             +L+DNWV+SHP A GLLNKPFS+YD+L Y+FGRDRATG  AETF DVGSN P  GYD     DGN+        G  LS DD+  +RPS ASEGR
Subjt:  -----KLYDNWVKSHPVANGLLNKPFSHYDDLCYIFGRDRATGGRAETFVDVGSNVP-AGYDGLPTYDGND-------PGTGLSLDDIMGTRPSWASEGR

Query:  ASSSGSKRKWGGQASEATEIIRSAMEYANDQLKAI
          SSGSKRK G Q     E I  A++  N+QL+ I
Subjt:  ASSSGSKRKWGGQASEATEIIRSAMEYANDQLKAI

TrEMBL top hitse value%identityAlignment
A0A5A7T091 Retrotransposon protein1.4e-6753.19Show/hide
Query:  DVSDDVDEGDSTYA-TTGSEDIHYIETSSAWSQ------------WSMATSSRAQKHHWTKEEDATLVECLVELVSTDGWRSDNETFRPGYHSHLQKMMA
        D  +D DEGDSTYA TT SEDI YIET++ WSQ            W M+TS+RA +H WT+EE+ TLVECL+ELVS  GW+SDN TFRPGY + L +MMA
Subjt:  DVSDDVDEGDSTYA-TTGSEDIHYIETSSAWSQ------------WSMATSSRAQKHHWTKEEDATLVECLVELVSTDGWRSDNETFRPGYHSHLQKMMA

Query:  ERMSGHNITAST-IDCRIKTTKRAFQAISKMMGLMC----------------KLYDNWVKSHPVANGLLNKPFSHYDDLCYIFGRDRATGGRAETFVDVG
        E++ G  + A+T IDCRIKT KR FQAI++M G  C                +L+DNWV+SHP A GLLNKPF +YD+L Y+F RDRATG  AETF DVG
Subjt:  ERMSGHNITAST-IDCRIKTTKRAFQAISKMMGLMC----------------KLYDNWVKSHPVANGLLNKPFSHYDDLCYIFGRDRATGGRAETFVDVG

Query:  SNVP-AGYDGLPTYDGND-------PGTGLSLDDIMGTRPSWASEGRASSSGSKRKWGGQASEATEIIRSAMEYANDQLKAI
        SN P  GYD     DGN+        G  +S DD+  +RPS ASEGR  SSGSKRK G Q     E I  A++  N+QL+ I
Subjt:  SNVP-AGYDGLPTYDGND-------PGTGLSLDDIMGTRPSWASEGRASSSGSKRKWGGQASEATEIIRSAMEYANDQLKAI

A0A5A7TGP1 Retrotransposon protein4.2e-5954.89Show/hide
Query:  MATSSRAQKHHWTKEEDATLVECLVELVSTDGWRSDNETFRPGYHSHLQKMMAERMSGHNITAST-IDCRIKTTKRAFQAISKMMGLMC-----------
        M+TS+RA +H WTKEE+ TLVECL+ELVS  GW+SDN TFRPGY + L +MMAE++ G  + A+T IDCRIKT KR FQAI++M G  C           
Subjt:  MATSSRAQKHHWTKEEDATLVECLVELVSTDGWRSDNETFRPGYHSHLQKMMAERMSGHNITAST-IDCRIKTTKRAFQAISKMMGLMC-----------

Query:  -----KLYDNWVKSHPVANGLLNKPFSHYDDLCYIFGRDRATGGRAETFVDVGSNVP-AGYDGLPTYDGND-------PGTGLSLDDIMGTRPSWASEGR
             +L+DNWV+SHP A GLLNKPF +YD+L Y+FGRDRATG  AETF DVGSN P  GYD     DGN+        G  LS DD+  +RPS ASEGR
Subjt:  -----KLYDNWVKSHPVANGLLNKPFSHYDDLCYIFGRDRATGGRAETFVDVGSNVP-AGYDGLPTYDGND-------PGTGLSLDDIMGTRPSWASEGR

Query:  ASSSGSKRKWGGQASEATEIIRSAMEYANDQLKAI
          SSGSKRK G Q     E I  A++  N+QL+ I
Subjt:  ASSSGSKRKWGGQASEATEIIRSAMEYANDQLKAI

A0A5D3BRF0 Retrotransposon protein1.5e-6147.7Show/hide
Query:  ELQACRKNDVSDDVDEGDSTYATTGSEDIHYIETSSAWSQWS-------MATSSRAQKHHWTKEEDATLVECLVELVSTDGWRSDNETFRPGYHSHLQKM
        E+  C   D+ DD+DE DST+AT+  +DIHYIE S+ W+ W        +A+SSR  KH+WTKEE+A LVECL+ELV+  GWR DNETFRP Y + L +M
Subjt:  ELQACRKNDVSDDVDEGDSTYATTGSEDIHYIETSSAWSQWS-------MATSSRAQKHHWTKEEDATLVECLVELVSTDGWRSDNETFRPGYHSHLQKM

Query:  MAERMSGHNITASTIDCRIKTTKRAFQAISKMMGLMC----------------KLYDNWVKSHPVANGLLNKPFSHYDDLCYIFGRDRATGGRAETFVDV
        M  ++ G NI A TID RIK  KR F AI++M G  C                +++D+WVK+HP A GLLNK FSHY+ L Y+FG+DRA  G  E+F+DV
Subjt:  MAERMSGHNITASTIDCRIKTTKRAFQAISKMMGLMC----------------KLYDNWVKSHPVANGLLNKPFSHYDDLCYIFGRDRATGGRAETFVDV

Query:  GSNVPAGYDGLPTYDGND--------PGTGLSLDDIMGTRPSWASEGRASSSGSKRKWGGQASEATEIIRSAMEYANDQLKAI
         SN   GY+        D         G  +S D++MGTR +  SEGR  SSGSKRK GGQA+++ +++R+ +EY N+QL  I
Subjt:  GSNVPAGYDGLPTYDGND--------PGTGLSLDDIMGTRPSWASEGRASSSGSKRKWGGQASEATEIIRSAMEYANDQLKAI

A0A5D3DBP2 Retrotransposon protein2.5e-5954.89Show/hide
Query:  MATSSRAQKHHWTKEEDATLVECLVELVSTDGWRSDNETFRPGYHSHLQKMMAERMSGHNITAST-IDCRIKTTKRAFQAISKMMGLMC-----------
        M+TS+RA +H WTKEE+ TLVECL+ELVS  GW+SDN TFRPGY + L ++MAE++ G  + A+T IDCRIKT KR FQAI++M G  C           
Subjt:  MATSSRAQKHHWTKEEDATLVECLVELVSTDGWRSDNETFRPGYHSHLQKMMAERMSGHNITAST-IDCRIKTTKRAFQAISKMMGLMC-----------

Query:  -----KLYDNWVKSHPVANGLLNKPFSHYDDLCYIFGRDRATGGRAETFVDVGSNVP-AGYDGLPTYDGND-------PGTGLSLDDIMGTRPSWASEGR
             +L+DNWV+SHP A GLLNKPFS+YD+L Y+FGRDRATG  AETF DVGSN P  GYD     DGN+        G  LS DD+  +RPS ASEGR
Subjt:  -----KLYDNWVKSHPVANGLLNKPFSHYDDLCYIFGRDRATGGRAETFVDVGSNVP-AGYDGLPTYDGND-------PGTGLSLDDIMGTRPSWASEGR

Query:  ASSSGSKRKWGGQASEATEIIRSAMEYANDQLKAI
          SSGSKRK G Q     E I  A++  N+QL+ I
Subjt:  ASSSGSKRKWGGQASEATEIIRSAMEYANDQLKAI

E5GCB5 Retrotransposon protein3.2e-6752.73Show/hide
Query:  DVSDDVDEGDSTYATTGSEDIHYIETSSAWSQWS-------MATSSRAQKHHWTKEEDATLVECLVELVSTDGWRSDNETFRPGYHSHLQKMMAERMSGH
        D+ D++DE DST+ATT ++DIHYIETS+ WSQW        M +SSR  KH WTKEE+A LVECLVELV+  GWRSDN TFRPGY + L +MMA ++ G 
Subjt:  DVSDDVDEGDSTYATTGSEDIHYIETSSAWSQWS-------MATSSRAQKHHWTKEEDATLVECLVELVSTDGWRSDNETFRPGYHSHLQKMMAERMSGH

Query:  NITASTIDCRIKTTKRAFQAISKMMGLMC----------------KLYDNWVKSHPVANGLLNKPFSHYDDLCYIFGRDRATGGRAETFVDVGSNVPAGY
        NI ASTID RIK  KR F A+++M G  C                +++D+W  SHP A GLLNK F HYD+L Y+FG+DRATGGRAE+F D+GSN P GY
Subjt:  NITASTIDCRIKTTKRAFQAISKMMGLMC----------------KLYDNWVKSHPVANGLLNKPFSHYDDLCYIFGRDRATGGRAETFVDVGSNVPAGY

Query:  -----DGLPTYD---GNDPGTGLSLDDIMGTRPSWASEGRASSSGSKRKWGGQASEATEIIRSAMEYANDQLKAI
             D +P  D      PG  +S DD+M TR +  SE R  SSGSKRK  G A+++ +I+R+A+EY N+QL  I
Subjt:  -----DGLPTYD---GNDPGTGLSLDDIMGTRPSWASEGRASSSGSKRKWGGQASEATEIIRSAMEYANDQLKAI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTTACAAGCTTGTCGAAAAAATGACGTATCAGATGATGTTGATGAGGGTGACTCTACATACGCCACTACTGGCAGTGAAGATATTCATTACATAGAGACCTCGAG
TGCATGGAGTCAATGGAGTATGGCAACTTCTTCAAGGGCCCAAAAGCACCACTGGACAAAAGAGGAGGATGCCACTCTCGTTGAATGTCTCGTGGAATTGGTATCAACCG
ACGGGTGGAGGTCGGACAATGAGACGTTTAGACCCGGTTATCATAGTCATCTGCAGAAAATGATGGCTGAGAGGATGTCGGGACATAACATAACGGCTTCGACCATAGAT
TGTCGAATAAAGACTACGAAAAGAGCGTTCCAAGCCATATCTAAAATGATGGGCCTGATGTGCAAGTTGTACGACAATTGGGTGAAGAGTCATCCAGTCGCAAATGGCCT
CCTAAACAAACCCTTTTCCCATTACGACGACCTCTGCTACATCTTTGGAAGAGATCGTGCAACAGGAGGTCGTGCTGAAACTTTTGTCGATGTTGGGTCGAACGTGCCTG
CAGGGTACGATGGATTACCCACTTATGACGGGAACGATCCAGGGACTGGACTGTCACTTGACGACATAATGGGCACACGACCCAGTTGGGCGTCTGAGGGTAGGGCGAGT
TCGAGCGGTTCGAAGAGGAAATGGGGAGGGCAGGCGTCCGAGGCAACAGAAATTATTCGTAGTGCCATGGAATATGCGAACGACCAGTTGAAGGCCATAACATAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGTTACAAGCTTGTCGAAAAAATGACGTATCAGATGATGTTGATGAGGGTGACTCTACATACGCCACTACTGGCAGTGAAGATATTCATTACATAGAGACCTCGAG
TGCATGGAGTCAATGGAGTATGGCAACTTCTTCAAGGGCCCAAAAGCACCACTGGACAAAAGAGGAGGATGCCACTCTCGTTGAATGTCTCGTGGAATTGGTATCAACCG
ACGGGTGGAGGTCGGACAATGAGACGTTTAGACCCGGTTATCATAGTCATCTGCAGAAAATGATGGCTGAGAGGATGTCGGGACATAACATAACGGCTTCGACCATAGAT
TGTCGAATAAAGACTACGAAAAGAGCGTTCCAAGCCATATCTAAAATGATGGGCCTGATGTGCAAGTTGTACGACAATTGGGTGAAGAGTCATCCAGTCGCAAATGGCCT
CCTAAACAAACCCTTTTCCCATTACGACGACCTCTGCTACATCTTTGGAAGAGATCGTGCAACAGGAGGTCGTGCTGAAACTTTTGTCGATGTTGGGTCGAACGTGCCTG
CAGGGTACGATGGATTACCCACTTATGACGGGAACGATCCAGGGACTGGACTGTCACTTGACGACATAATGGGCACACGACCCAGTTGGGCGTCTGAGGGTAGGGCGAGT
TCGAGCGGTTCGAAGAGGAAATGGGGAGGGCAGGCGTCCGAGGCAACAGAAATTATTCGTAGTGCCATGGAATATGCGAACGACCAGTTGAAGGCCATAACATAA
Protein sequenceShow/hide protein sequence
MELQACRKNDVSDDVDEGDSTYATTGSEDIHYIETSSAWSQWSMATSSRAQKHHWTKEEDATLVECLVELVSTDGWRSDNETFRPGYHSHLQKMMAERMSGHNITASTID
CRIKTTKRAFQAISKMMGLMCKLYDNWVKSHPVANGLLNKPFSHYDDLCYIFGRDRATGGRAETFVDVGSNVPAGYDGLPTYDGNDPGTGLSLDDIMGTRPSWASEGRAS
SSGSKRKWGGQASEATEIIRSAMEYANDQLKAIT