CuGenDBv2

Gene ID	PI0024954
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	DNA binding protein
Genome location	chr06:5770476..5771168
RNA-Seq Expression	PI0024954
Synteny	PI0024954
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0052154.1 DNA binding protein [Cucumis melo var. makuwa]

8.0e-112

93.48

Show/hide

Query:  MNRQHSNHLQSNSISHCQECGISQSTCWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCFDVYDDSTPPPSHHRVMCFRCPSISHLSCVSFRFSSTFLCP
        MNRQ  NHLQ+NSISHCQECGISQS CWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCFDVY+DSTPPPSHHRVMC+RCPSISHLSCVSFRFSSTFLCP
Subjt:  MNRQHSNHLQSNSISHCQECGISQSTCWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCFDVYDDSTPPPSHHRVMCFRCPSISHLSCVSFRFSSTFLCP

Query:  LCSDPSFVFFDGFDSGGGLCQSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAETKIKNAAFAKKQATLALERLAYLVLQEKDKNGYSK
        LCSDP FVFFDGFDSG  L QSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAE KIKNAAFAKKQATLALE+LAYLVLQEKDKNGYSK
Subjt:  LCSDPSFVFFDGFDSGGGLCQSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAETKIKNAAFAKKQATLALERLAYLVLQEKDKNGYSK

Query:  SNGDAVASERKVEEEESKLQEKEVTAIFDL
        SNGDAVASER VEEEE KL EKEVTAIFDL
Subjt:  SNGDAVASERKVEEEESKLQEKEVTAIFDL

KAE8650412.1 hypothetical protein Csa_010702 [Cucumis sativus]

1.3e-117

95.65

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Query:  MNRQHSNHLQSNSISHCQECGISQSTCWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCFDVYDDSTPPPSHHRVMCFRCPSISHLSCVSFRFSSTFLCP
        MNRQHSNHLQSNSISHCQ+CGISQS CWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCFDVY+DSTPPPSHHRVMCFRCPSISHLSCVSFRFSSTFLCP
Subjt:  MNRQHSNHLQSNSISHCQECGISQSTCWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCFDVYDDSTPPPSHHRVMCFRCPSISHLSCVSFRFSSTFLCP

Query:  LCSDPSFVFFDGFDSGGGLCQSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAETKIKNAAFAKKQATLALERLAYLVLQEKDKNGYSK
        LCSDP FVFFDGFDSGG LCQSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAE KIKNAAFAKKQATLALE+LAYLVLQEKDKNGYSK
Subjt:  LCSDPSFVFFDGFDSGGGLCQSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAETKIKNAAFAKKQATLALERLAYLVLQEKDKNGYSK

Query:  SNGDAVASERKVEEEESKLQEKEVTAIFDL
        SNGDAV SERKVEEEE KLQEK+VTAIFDL
Subjt:  SNGDAVASERKVEEEESKLQEKEVTAIFDL

XP_004147629.1 uncharacterized protein LOC101204799 [Cucumis sativus]

1.1e-113

95.52

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Query:  MNRQHSNHLQSNSISHCQECGISQSTCWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCFDVYDDSTPPPSHHRVMCFRCPSISHLSCVSFRFSSTFLCP
        MNRQHSNHLQSNSISHCQ+CGISQS CWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCFDVY+DSTPPPSHHRVMCFRCPSISHLSCVSFRFSSTFLCP
Subjt:  MNRQHSNHLQSNSISHCQECGISQSTCWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCFDVYDDSTPPPSHHRVMCFRCPSISHLSCVSFRFSSTFLCP

Query:  LCSDPSFVFFDGFDSGGGLCQSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAETKIKNAAFAKKQATLALERLAYLVLQEKDKNGYSK
        LCSDP FVFFDGFDSGG LCQSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAE KIKNAAFAKKQATLALE+LAYLVLQEKDKNGYSK
Subjt:  LCSDPSFVFFDGFDSGGGLCQSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAETKIKNAAFAKKQATLALERLAYLVLQEKDKNGYSK

Query:  SNGDAVASERKVEEEESKLQEKE
        SNGDAV SERKVEEEE KLQEK+
Subjt:  SNGDAVASERKVEEEESKLQEKE

XP_016899011.1 PREDICTED: uncharacterized protein LOC103483924 [Cucumis melo]

1.1e-108

91.27

Show/hide

Query:  MNRQHSNHLQSNSISHCQECGISQSTCWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCFDVYDDSTPPPSHHRVMCFRCPSISHLSCVSFRFSSTFLCP
        MNRQ  NHLQ+NSISHCQECGISQS CWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCFDVY+DSTPPPSHHRVMC+RCPSISHLSCVSFRFSSTFLCP
Subjt:  MNRQHSNHLQSNSISHCQECGISQSTCWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCFDVYDDSTPPPSHHRVMCFRCPSISHLSCVSFRFSSTFLCP

Query:  LCSDPSFVFFDGFDSGGGLCQSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAETKIKNAAFAKKQATLALERLAYLVLQEKDKNGYSK
        LCSDP FVFFDGFDSG  L QSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAE KIKNAAFAKKQATLALE+LAYLVLQEKDKNGYSK
Subjt:  LCSDPSFVFFDGFDSGGGLCQSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAETKIKNAAFAKKQATLALERLAYLVLQEKDKNGYSK

Query:  SNGDAVASERKVEEEESKLQEKEVTAIFD
        SNGDAVASER VEEEE KL EKE   +F+
Subjt:  SNGDAVASERKVEEEESKLQEKEVTAIFD

XP_038902666.1 uncharacterized protein LOC120089301 [Benincasa hispida]

1.8e-108

89.96

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Query:  MNRQHSNHLQSNSISHCQECGISQSTCWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCFDVYDDSTPPPSHHRVMCFRCPSISHLSCVSFRFSSTFLCP
        MNR H NHLQSNS+SHCQECGISQS CWILHNVR KA+FRRLCTNCVLKHNLSRFCPLCFDVYDDSTPPPSH RVMCFRCPSISHLSC SFRFSSTFLCP
Subjt:  MNRQHSNHLQSNSISHCQECGISQSTCWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCFDVYDDSTPPPSHHRVMCFRCPSISHLSCVSFRFSSTFLCP

Query:  LCSDPSFVFFDGFDSGGGLCQSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAETKIKNAAFAKKQATLALERLAYLVLQEKDKNGYSK
        LCSDP F FFDGFDS GGLCQSESTVAFLA +NVDAKS KAIVAAARVSAQSMRRAALDARAVAE KIKNAAFAKKQATLALERLAYLVLQEKD+NGY+K
Subjt:  LCSDPSFVFFDGFDSGGGLCQSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAETKIKNAAFAKKQATLALERLAYLVLQEKDKNGYSK

Query:  SNGDAVASERKVEEEESKLQEKEVTAIFD
        +NGDAVA ER VEEE+SKLQEKEVT+IF+
Subjt:  SNGDAVASERKVEEEESKLQEKEVTAIFD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L5G4 Uncharacterized protein

6.2e-118

95.65

Show/hide

Query:  MNRQHSNHLQSNSISHCQECGISQSTCWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCFDVYDDSTPPPSHHRVMCFRCPSISHLSCVSFRFSSTFLCP
        MNRQHSNHLQSNSISHCQ+CGISQS CWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCFDVY+DSTPPPSHHRVMCFRCPSISHLSCVSFRFSSTFLCP
Subjt:  MNRQHSNHLQSNSISHCQECGISQSTCWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCFDVYDDSTPPPSHHRVMCFRCPSISHLSCVSFRFSSTFLCP

Query:  LCSDPSFVFFDGFDSGGGLCQSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAETKIKNAAFAKKQATLALERLAYLVLQEKDKNGYSK
        LCSDP FVFFDGFDSGG LCQSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAE KIKNAAFAKKQATLALE+LAYLVLQEKDKNGYSK
Subjt:  LCSDPSFVFFDGFDSGGGLCQSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAETKIKNAAFAKKQATLALERLAYLVLQEKDKNGYSK

Query:  SNGDAVASERKVEEEESKLQEKEVTAIFDL
        SNGDAV SERKVEEEE KLQEK+VTAIFDL
Subjt:  SNGDAVASERKVEEEESKLQEKEVTAIFDL

A0A1S4DSP5 uncharacterized protein LOC103483924

5.2e-109

91.27

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Query:  MNRQHSNHLQSNSISHCQECGISQSTCWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCFDVYDDSTPPPSHHRVMCFRCPSISHLSCVSFRFSSTFLCP
        MNRQ  NHLQ+NSISHCQECGISQS CWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCFDVY+DSTPPPSHHRVMC+RCPSISHLSCVSFRFSSTFLCP
Subjt:  MNRQHSNHLQSNSISHCQECGISQSTCWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCFDVYDDSTPPPSHHRVMCFRCPSISHLSCVSFRFSSTFLCP

Query:  LCSDPSFVFFDGFDSGGGLCQSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAETKIKNAAFAKKQATLALERLAYLVLQEKDKNGYSK
        LCSDP FVFFDGFDSG  L QSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAE KIKNAAFAKKQATLALE+LAYLVLQEKDKNGYSK
Subjt:  LCSDPSFVFFDGFDSGGGLCQSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAETKIKNAAFAKKQATLALERLAYLVLQEKDKNGYSK

Query:  SNGDAVASERKVEEEESKLQEKEVTAIFD
        SNGDAVASER VEEEE KL EKE   +F+
Subjt:  SNGDAVASERKVEEEESKLQEKEVTAIFD

A0A5A7U9X0 DNA binding protein

3.9e-112

93.48

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Query:  MNRQHSNHLQSNSISHCQECGISQSTCWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCFDVYDDSTPPPSHHRVMCFRCPSISHLSCVSFRFSSTFLCP
        MNRQ  NHLQ+NSISHCQECGISQS CWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCFDVY+DSTPPPSHHRVMC+RCPSISHLSCVSFRFSSTFLCP
Subjt:  MNRQHSNHLQSNSISHCQECGISQSTCWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCFDVYDDSTPPPSHHRVMCFRCPSISHLSCVSFRFSSTFLCP

Query:  LCSDPSFVFFDGFDSGGGLCQSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAETKIKNAAFAKKQATLALERLAYLVLQEKDKNGYSK
        LCSDP FVFFDGFDSG  L QSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAE KIKNAAFAKKQATLALE+LAYLVLQEKDKNGYSK
Subjt:  LCSDPSFVFFDGFDSGGGLCQSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAETKIKNAAFAKKQATLALERLAYLVLQEKDKNGYSK

Query:  SNGDAVASERKVEEEESKLQEKEVTAIFDL
        SNGDAVASER VEEEE KL EKEVTAIFDL
Subjt:  SNGDAVASERKVEEEESKLQEKEVTAIFDL

A0A6J1GVZ7 uncharacterized protein LOC111457661

3.5e-89

78.17

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Query:  MNRQHSNHLQSNSISHCQECGISQSTCWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCFDVYDDSTPPPSHHRVMCFRCPSISHLSCVSFRFSSTFLCP
        MNR H NHLQSNSIS+C ECGISQS CWILHNVR KA+FRRLCTNCVLK+NLSRFCPLCFD+YDDSTPP SH RVMCFRCPSISH+SC SFRFSSTFLCP
Subjt:  MNRQHSNHLQSNSISHCQECGISQSTCWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCFDVYDDSTPPPSHHRVMCFRCPSISHLSCVSFRFSSTFLCP

Query:  LCSDPSFVFFDGFDSGGGLCQSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAETKIKNAAFAKKQATLALERLAYLVLQEKDKNGYSK
        +CSDP F FFDGFDS  GL QSE  VA LAG+  D KS KAIVAAARV+AQSMRRAA DARAVAE KI+NA FAKKQATLALERLA+LVLQEKD+NGY+K
Subjt:  LCSDPSFVFFDGFDSGGGLCQSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAETKIKNAAFAKKQATLALERLAYLVLQEKDKNGYSK

Query:  SNGDAVASERKVEEEESKLQEKEVTAIFD
        +NG+A A   + EEEE++LQ + VTAI +
Subjt:  SNGDAVASERKVEEEESKLQEKEVTAIFD

E5GC39 DNA binding protein

3.4e-108

93.27

Show/hide

Query:  MNRQHSNHLQSNSISHCQECGISQSTCWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCFDVYDDSTPPPSHHRVMCFRCPSISHLSCVSFRFSSTFLCP
        MNRQ  NHLQ+NSISHCQECGISQS CWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCFDVY+DSTPPPSHHRVMC+RCPSISHLSCVSFRFSSTFLCP
Subjt:  MNRQHSNHLQSNSISHCQECGISQSTCWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCFDVYDDSTPPPSHHRVMCFRCPSISHLSCVSFRFSSTFLCP

Query:  LCSDPSFVFFDGFDSGGGLCQSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAETKIKNAAFAKKQATLALERLAYLVLQEKDKNGYSK
        LCSDP FVFFDGFDSG  L QSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAE KIKNAAFAKKQATLALE+LAYLVLQEKDKNGYSK
Subjt:  LCSDPSFVFFDGFDSGGGLCQSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAETKIKNAAFAKKQATLALERLAYLVLQEKDKNGYSK

Query:  SNGDAVASERKVEEEESKLQEKE
        SNGDAVASER VEEEE KL EKE
Subjt:  SNGDAVASERKVEEEESKLQEKE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G09520.1 LOCATED IN: chloroplast

2.8e-22

33.8

Show/hide

Query:  SNSISHCQECGISQSTCWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCFDVYDDSTPPPSHHRVMCF--RCPSISHLSCVSFRFSSTFLCPLCSDP-SF
        +NS   C +CG   S  W++H VR +A+ R  CT+C+L+++ + FCP CF +YD S  PPS  RV C    C S++H+ C       ++LCP C DP SF
Subjt:  SNSISHCQECGISQSTCWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCFDVYDDSTPPPSHHRVMCF--RCPSISHLSCVSFRFSSTFLCPLCSDP-SF

Query:  VFFDGFDSGGGLCQSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAETKIKNAAFAKKQATLALERLAYLVLQEKDKNGYSKSNGDAVA
         FF       G             + VD    +A + AA+++A SM +A + A+   + + K AA AKK+A  ALE++  L  +EK ++   K     V 
Subjt:  VFFDGFDSGGGLCQSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAETKIKNAAFAKKQATLALERLAYLVLQEKDKNGYSKSNGDAVA

Query:  SERKVEEEESKLQEKE
         + K+    +    KE
Subjt:  SERKVEEEESKLQEKE

AT3G17460.1 PHD finger family protein

1.5e-15

32.09

Show/hide

Query:  LHNVRHKATFRRLCTNCVLKHNLSRFCPLCFDVYDDSTPPPSHHRVMCFRCPSISHLSCVSFRFS--------------STFLCPLCSDPSFVFFDGFDS
        +H V     FRRLCT+C+LK     FC +CF+++D++ PP +  R++C  CPS +HLSC +   S              S+F C  CS+P+F FF     
Subjt:  LHNVRHKATFRRLCTNCVLKHNLSRFCPLCFDVYDDSTPPPSHHRVMCFRCPSISHLSCVSFRFS--------------STFLCPLCSDPSFVFFDGFDS

Query:  GGGLCQSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAETKIKNAAFAKKQATLALERLAYLVLQEKDKNGYSKSN
             +S           +  KS  A+VAA  +S  +M +A    +  A  KI  A  AK +A  AL  L  +V+++    G  K +
Subjt:  GGGLCQSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAETKIKNAAFAKKQATLALERLAYLVLQEKDKNGYSKSN

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAATCGCCAACACTCCAACCATCTTCAATCAAACTCCATTTCTCACTGTCAAGAATGCGGAATCTCTCAATCCACCTGTTGGATCCTCCACAATGTCCGTCACAAAGC
CACCTTCCGTCGTCTCTGCACTAATTGTGTCCTCAAGCACAATCTCTCCCGTTTTTGTCCTCTTTGCTTTGATGTTTACGACGATTCAACTCCTCCGCCGTCTCATCACC
GAGTTATGTGCTTCAGATGCCCTTCAATCTCTCATCTCTCTTGCGTTTCCTTTCGATTTTCCTCTACCTTCCTATGCCCTCTCTGCTCCGATCCAAGTTTTGTCTTCTTC
GATGGTTTTGACTCCGGCGGCGGCCTTTGTCAATCTGAGTCTACTGTCGCCTTTTTAGCCGGAAAAAACGTTGATGCTAAATCAGGGAAAGCGATTGTCGCAGCAGCTCG
TGTGTCCGCTCAATCCATGAGGAGAGCAGCTCTTGACGCTAGGGCTGTTGCGGAGACGAAGATCAAGAATGCTGCGTTTGCGAAGAAACAAGCTACTCTCGCATTGGAAC
GGCTTGCGTATCTTGTTCTTCAGGAGAAGGATAAAAATGGATATTCTAAAAGTAATGGAGATGCTGTTGCTAGTGAGAGGAAGGTTGAAGAAGAAGAATCCAAGCTACAG
GAGAAAGAGGTAACCGCCATTTTTGATCTATGA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MNRQHSNHLQSNSISHCQECGISQSTCWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCFDVYDDSTPPPSHHRVMCFRCPSISHLSCVSFRFSSTFLCPLCSDPSFVFF
DGFDSGGGLCQSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAETKIKNAAFAKKQATLALERLAYLVLQEKDKNGYSKSNGDAVASERKVEEEESKLQ
EKEVTAIFDL

PI0024954 (gene) of Melon (PI 482460) v1 genome