CuGenDBv2

Gene ID	PI0024976
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Retrotrans_gag domain-containing protein
Genome location	chr11:21783458..21784015
RNA-Seq Expression	PI0024976
Synteny	PI0024976
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006310 - DNA recombination (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0036933.1 uncharacterized protein E6C27_scaffold86G00060 [Cucumis melo var. makuwa]

4.1e-82

81.52

Show/hide

Query:  MEKKSLESFKEFAQRWRDKATEVQPPLTDKEMISMFMNTLRTSFYDRMIGNATTIFSDIIVIGERIEYGIKHGRIAEATTDYGGLKRGTTPKKKEGEVHT
        MEKKS ESFKE+AQRWRD A EVQPPLTDKEM SMFMNTLR  FY+RMIGNA+T FSDIIVIGERIEYGIKHGR+AEATT+YGG+K+GT  KKKEGEVH 
Subjt:  MEKKSLESFKEFAQRWRDKATEVQPPLTDKEMISMFMNTLRTSFYDRMIGNATTIFSDIIVIGERIEYGIKHGRIAEATTDYGGLKRGTTPKKKEGEVHT

Query:  VGFPNSGKHKLSFGQREHGQSFPSYINNVSHVPYNNYLPAHTFFGTPKPVNSNSPRPFAQGQVSKANSDTWRFDPIPMTYTELL
        +GFPNSGKHK  FG R++ Q+FPSYINNVSH+PYN+Y+PAHT   TPKPVNSNSPRPF QGQ SK NSDTWRFDPIPMTYTELL
Subjt:  VGFPNSGKHKLSFGQREHGQSFPSYINNVSHVPYNNYLPAHTFFGTPKPVNSNSPRPFAQGQVSKANSDTWRFDPIPMTYTELL

KAA0036942.1 uncharacterized protein E6C27_scaffold86G00180 [Cucumis melo var. makuwa]

2.0e-81

80.43

Show/hide

Query:  MEKKSLESFKEFAQRWRDKATEVQPPLTDKEMISMFMNTLRTSFYDRMIGNATTIFSDIIVIGERIEYGIKHGRIAEATTDYGGLKRGTTPKKKEGEVHT
        +EKKS ESFKE+AQRWRD   EVQPPLTDKEM SMFMNTLR  FY+RMIGNA+T FSDIIVIGERIEYGIKHGR+AEATT+YGG+K+GT  KKKEGEVH 
Subjt:  MEKKSLESFKEFAQRWRDKATEVQPPLTDKEMISMFMNTLRTSFYDRMIGNATTIFSDIIVIGERIEYGIKHGRIAEATTDYGGLKRGTTPKKKEGEVHT

Query:  VGFPNSGKHKLSFGQREHGQSFPSYINNVSHVPYNNYLPAHTFFGTPKPVNSNSPRPFAQGQVSKANSDTWRFDPIPMTYTELL
        +GFPNSGKHK  FGQR++ Q+FPSYI+NVSH+PYN+Y+PAHT   TPKPVNSNSPRPF QGQ SK NSDTWRFDPIPMTYTELL
Subjt:  VGFPNSGKHKLSFGQREHGQSFPSYINNVSHVPYNNYLPAHTFFGTPKPVNSNSPRPFAQGQVSKANSDTWRFDPIPMTYTELL

KAA0036950.1 uncharacterized protein E6C27_scaffold86G00300 [Cucumis melo var. makuwa]

2.4e-82

81.52

Show/hide

Query:  MEKKSLESFKEFAQRWRDKATEVQPPLTDKEMISMFMNTLRTSFYDRMIGNATTIFSDIIVIGERIEYGIKHGRIAEATTDYGGLKRGTTPKKKEGEVHT
        MEKKS ESFKE+AQRWRD A EVQPPLTDKEM SMFMNTLR  FY+RMIGNA+T FSDIIVIGERIEYGIKHGR+AEATT+YGG+K+GT  KKKEGEVH 
Subjt:  MEKKSLESFKEFAQRWRDKATEVQPPLTDKEMISMFMNTLRTSFYDRMIGNATTIFSDIIVIGERIEYGIKHGRIAEATTDYGGLKRGTTPKKKEGEVHT

Query:  VGFPNSGKHKLSFGQREHGQSFPSYINNVSHVPYNNYLPAHTFFGTPKPVNSNSPRPFAQGQVSKANSDTWRFDPIPMTYTELL
        +GFPNSGKHK  FGQR++ Q+FPSYI+NVSH+PYN+Y+PAHT   TPKPVNSNSPRPF QGQ SK NSDTWRFDPIPMTYTELL
Subjt:  VGFPNSGKHKLSFGQREHGQSFPSYINNVSHVPYNNYLPAHTFFGTPKPVNSNSPRPFAQGQVSKANSDTWRFDPIPMTYTELL

KAA0036957.1 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein [Cucumis melo var. makuwa]

3.5e-81

80.43

Show/hide

Query:  MEKKSLESFKEFAQRWRDKATEVQPPLTDKEMISMFMNTLRTSFYDRMIGNATTIFSDIIVIGERIEYGIKHGRIAEATTDYGGLKRGTTPKKKEGEVHT
        MEKKS ESFKE+AQRWRD A EVQPPLTDKEM SMFMNTLR  FY+RMIGNA+T FSDIIVIGERIEYGIKHGR+AEATT+YG +K+GT  KKKEGEVH 
Subjt:  MEKKSLESFKEFAQRWRDKATEVQPPLTDKEMISMFMNTLRTSFYDRMIGNATTIFSDIIVIGERIEYGIKHGRIAEATTDYGGLKRGTTPKKKEGEVHT

Query:  VGFPNSGKHKLSFGQREHGQSFPSYINNVSHVPYNNYLPAHTFFGTPKPVNSNSPRPFAQGQVSKANSDTWRFDPIPMTYTELL
        +GFPNSGKHK  FGQR++ Q+FPSYI+NVSH+PYN+Y+PAHT   TPKPVNSNSPRPF QGQ SK NSDTWRFDPIPMTYTE+L
Subjt:  VGFPNSGKHKLSFGQREHGQSFPSYINNVSHVPYNNYLPAHTFFGTPKPVNSNSPRPFAQGQVSKANSDTWRFDPIPMTYTELL

KAA0060421.1 uncharacterized protein E6C27_scaffold22G002400 [Cucumis melo var. makuwa]

5.0e-80

78.8

Show/hide

Query:  MEKKSLESFKEFAQRWRDKATEVQPPLTDKEMISMFMNTLRTSFYDRMIGNATTIFSDIIVIGERIEYGIKHGRIAEATTDYGGLKRGTTPKKKEGEVHT
        MEKKS ESFKE+AQRW+D   EVQPPLTDKEM SMFMNTLR  FY+RMIGNA+T FSDIIVIGERIEYGIKHGR+AE TT+YGG+K+GT  KKKEGE+H 
Subjt:  MEKKSLESFKEFAQRWRDKATEVQPPLTDKEMISMFMNTLRTSFYDRMIGNATTIFSDIIVIGERIEYGIKHGRIAEATTDYGGLKRGTTPKKKEGEVHT

Query:  VGFPNSGKHKLSFGQREHGQSFPSYINNVSHVPYNNYLPAHTFFGTPKPVNSNSPRPFAQGQVSKANSDTWRFDPIPMTYTELL
        +GFPNSGKHK  FGQR++ Q+FPSYI+NVS++PYN+Y+PAHT   TPKPVNSNSPRPF QGQ SK NSDTWRFDPIPMTYTELL
Subjt:  VGFPNSGKHKLSFGQREHGQSFPSYINNVSHVPYNNYLPAHTFFGTPKPVNSNSPRPFAQGQVSKANSDTWRFDPIPMTYTELL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T0H8 Uncharacterized protein

9.8e-82

80.43

Show/hide

Query:  MEKKSLESFKEFAQRWRDKATEVQPPLTDKEMISMFMNTLRTSFYDRMIGNATTIFSDIIVIGERIEYGIKHGRIAEATTDYGGLKRGTTPKKKEGEVHT
        +EKKS ESFKE+AQRWRD   EVQPPLTDKEM SMFMNTLR  FY+RMIGNA+T FSDIIVIGERIEYGIKHGR+AEATT+YGG+K+GT  KKKEGEVH 
Subjt:  MEKKSLESFKEFAQRWRDKATEVQPPLTDKEMISMFMNTLRTSFYDRMIGNATTIFSDIIVIGERIEYGIKHGRIAEATTDYGGLKRGTTPKKKEGEVHT

Query:  VGFPNSGKHKLSFGQREHGQSFPSYINNVSHVPYNNYLPAHTFFGTPKPVNSNSPRPFAQGQVSKANSDTWRFDPIPMTYTELL
        +GFPNSGKHK  FGQR++ Q+FPSYI+NVSH+PYN+Y+PAHT   TPKPVNSNSPRPF QGQ SK NSDTWRFDPIPMTYTELL
Subjt:  VGFPNSGKHKLSFGQREHGQSFPSYINNVSHVPYNNYLPAHTFFGTPKPVNSNSPRPFAQGQVSKANSDTWRFDPIPMTYTELL

A0A5A7T0R1 Uncharacterized protein

1.2e-82

81.52

Show/hide

Query:  MEKKSLESFKEFAQRWRDKATEVQPPLTDKEMISMFMNTLRTSFYDRMIGNATTIFSDIIVIGERIEYGIKHGRIAEATTDYGGLKRGTTPKKKEGEVHT
        MEKKS ESFKE+AQRWRD A EVQPPLTDKEM SMFMNTLR  FY+RMIGNA+T FSDIIVIGERIEYGIKHGR+AEATT+YGG+K+GT  KKKEGEVH 
Subjt:  MEKKSLESFKEFAQRWRDKATEVQPPLTDKEMISMFMNTLRTSFYDRMIGNATTIFSDIIVIGERIEYGIKHGRIAEATTDYGGLKRGTTPKKKEGEVHT

Query:  VGFPNSGKHKLSFGQREHGQSFPSYINNVSHVPYNNYLPAHTFFGTPKPVNSNSPRPFAQGQVSKANSDTWRFDPIPMTYTELL
        +GFPNSGKHK  FGQR++ Q+FPSYI+NVSH+PYN+Y+PAHT   TPKPVNSNSPRPF QGQ SK NSDTWRFDPIPMTYTELL
Subjt:  VGFPNSGKHKLSFGQREHGQSFPSYINNVSHVPYNNYLPAHTFFGTPKPVNSNSPRPFAQGQVSKANSDTWRFDPIPMTYTELL

A0A5A7T1W2 Retrotrans_gag domain-containing protein

2.0e-82

81.52

Show/hide

Query:  MEKKSLESFKEFAQRWRDKATEVQPPLTDKEMISMFMNTLRTSFYDRMIGNATTIFSDIIVIGERIEYGIKHGRIAEATTDYGGLKRGTTPKKKEGEVHT
        MEKKS ESFKE+AQRWRD A EVQPPLTDKEM SMFMNTLR  FY+RMIGNA+T FSDIIVIGERIEYGIKHGR+AEATT+YGG+K+GT  KKKEGEVH 
Subjt:  MEKKSLESFKEFAQRWRDKATEVQPPLTDKEMISMFMNTLRTSFYDRMIGNATTIFSDIIVIGERIEYGIKHGRIAEATTDYGGLKRGTTPKKKEGEVHT

Query:  VGFPNSGKHKLSFGQREHGQSFPSYINNVSHVPYNNYLPAHTFFGTPKPVNSNSPRPFAQGQVSKANSDTWRFDPIPMTYTELL
        +GFPNSGKHK  FG R++ Q+FPSYINNVSH+PYN+Y+PAHT   TPKPVNSNSPRPF QGQ SK NSDTWRFDPIPMTYTELL
Subjt:  VGFPNSGKHKLSFGQREHGQSFPSYINNVSHVPYNNYLPAHTFFGTPKPVNSNSPRPFAQGQVSKANSDTWRFDPIPMTYTELL

A0A5A7T5W6 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein

1.7e-81

80.43

Show/hide

Query:  MEKKSLESFKEFAQRWRDKATEVQPPLTDKEMISMFMNTLRTSFYDRMIGNATTIFSDIIVIGERIEYGIKHGRIAEATTDYGGLKRGTTPKKKEGEVHT
        MEKKS ESFKE+AQRWRD A EVQPPLTDKEM SMFMNTLR  FY+RMIGNA+T FSDIIVIGERIEYGIKHGR+AEATT+YG +K+GT  KKKEGEVH 
Subjt:  MEKKSLESFKEFAQRWRDKATEVQPPLTDKEMISMFMNTLRTSFYDRMIGNATTIFSDIIVIGERIEYGIKHGRIAEATTDYGGLKRGTTPKKKEGEVHT

Query:  VGFPNSGKHKLSFGQREHGQSFPSYINNVSHVPYNNYLPAHTFFGTPKPVNSNSPRPFAQGQVSKANSDTWRFDPIPMTYTELL
        +GFPNSGKHK  FGQR++ Q+FPSYI+NVSH+PYN+Y+PAHT   TPKPVNSNSPRPF QGQ SK NSDTWRFDPIPMTYTE+L
Subjt:  VGFPNSGKHKLSFGQREHGQSFPSYINNVSHVPYNNYLPAHTFFGTPKPVNSNSPRPFAQGQVSKANSDTWRFDPIPMTYTELL

A0A5A7V3W7 Retrotrans_gag domain-containing protein

2.4e-80

78.8

Show/hide

Query:  MEKKSLESFKEFAQRWRDKATEVQPPLTDKEMISMFMNTLRTSFYDRMIGNATTIFSDIIVIGERIEYGIKHGRIAEATTDYGGLKRGTTPKKKEGEVHT
        MEKKS ESFKE+AQRW+D   EVQPPLTDKEM SMFMNTLR  FY+RMIGNA+T FSDIIVIGERIEYGIKHGR+AE TT+YGG+K+GT  KKKEGE+H 
Subjt:  MEKKSLESFKEFAQRWRDKATEVQPPLTDKEMISMFMNTLRTSFYDRMIGNATTIFSDIIVIGERIEYGIKHGRIAEATTDYGGLKRGTTPKKKEGEVHT

Query:  VGFPNSGKHKLSFGQREHGQSFPSYINNVSHVPYNNYLPAHTFFGTPKPVNSNSPRPFAQGQVSKANSDTWRFDPIPMTYTELL
        +GFPNSGKHK  FGQR++ Q+FPSYI+NVS++PYN+Y+PAHT   TPKPVNSNSPRPF QGQ SK NSDTWRFDPIPMTYTELL
Subjt:  VGFPNSGKHKLSFGQREHGQSFPSYINNVSHVPYNNYLPAHTFFGTPKPVNSNSPRPFAQGQVSKANSDTWRFDPIPMTYTELL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGAGAAGAAGAGTTTAGAAAGTTTCAAAGAATTTGCTCAACGATGGAGAGACAAGGCCACTGAGGTTCAGCCACCGTTAACAGACAAAGAAATGATATCAATGTTTAT
GAATACTTTACGGACTTCATTCTATGATCGAATGATTGGTAATGCAACAACGATTTTTTCTGACATTATTGTTATTGGTGAAAGAATTGAATATGGGATAAAGCACGGGA
GGATAGCAGAGGCTACAACTGATTATGGTGGACTAAAGAGAGGGACAACACCTAAAAAGAAAGAAGGAGAGGTTCATACAGTTGGTTTCCCTAATTCAGGGAAGCATAAA
TTAAGTTTTGGGCAAAGAGAACATGGGCAAAGTTTTCCATCATATATAAACAATGTTTCTCATGTCCCTTACAACAACTATCTACCGGCTCACACCTTCTTTGGAACCCC
AAAACCTGTTAACTCAAACTCTCCTCGACCATTTGCACAGGGTCAAGTTAGCAAAGCTAATTCAGATACTTGGCGATTTGATCCAATTCCCATGACCTATACAGAGCTTT
TACTCTAG

mRNA sequence

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Protein sequence

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MEKKSLESFKEFAQRWRDKATEVQPPLTDKEMISMFMNTLRTSFYDRMIGNATTIFSDIIVIGERIEYGIKHGRIAEATTDYGGLKRGTTPKKKEGEVHTVGFPNSGKHK
LSFGQREHGQSFPSYINNVSHVPYNNYLPAHTFFGTPKPVNSNSPRPFAQGQVSKANSDTWRFDPIPMTYTELLL

PI0024976 (gene) of Melon (PI 482460) v1 genome