CuGenDBv2

Gene ID	PI0024997
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Reverse transcriptase
Genome location	chr05:14692153..14692596
RNA-Seq Expression	PI0024997
Synteny	PI0024997
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0004519 - endonuclease activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0031722.1 uncharacterized protein E6C27_scaffold139G005100 [Cucumis melo var. makuwa]

1.5e-47

67.33

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Query:  MLYLLEIPDTVRFLKGRIEEVSEKAVAIDAVTDRLNGLPIKELLTRVDTLEAKAT---RINYERGDSSTGSVAHVEERIGELDSSQKSIVEMINGMSEDF
        MLYL+E+PD++R+L+ R+EE+ +K   IDAVT R+ G PI+EL+TRVD LE        +NYERGDSSTGSVAH+EER+ ELDSSQK+++EMINGMSEDF
Subjt:  MLYLLEIPDTVRFLKGRIEEVSEKAVAIDAVTDRLNGLPIKELLTRVDTLEAKAT---RINYERGDSSTGSVAHVEERIGELDSSQKSIVEMINGMSEDF

Query:  RAALDVVRNEIADVSARVNLTMRAIAIQAPTGGAIQVNKVKIPNPNPSMG
        RA LDVVRNEIADV+AR+NLTMRA+A QAP GGAI V++VKIP P P  G
Subjt:  RAALDVVRNEIADVSARVNLTMRAIAIQAPTGGAIQVNKVKIPNPNPSMG

KAA0032849.1 reverse transcriptase [Cucumis melo var. makuwa]

2.0e-47

67.33

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Query:  MLYLLEIPDTVRFLKGRIEEVSEKAVAIDAVTDRLNGLPIKELLTRVDTLEAKAT---RINYERGDSSTGSVAHVEERIGELDSSQKSIVEMINGMSEDF
        MLYL+E+PD++R+L+ R+EE+SEK   IDAV  R+ G PI+EL+TRVD LE        +NYERGDSSTGSVAH+EER+ ELDSSQK+++EMINGMSEDF
Subjt:  MLYLLEIPDTVRFLKGRIEEVSEKAVAIDAVTDRLNGLPIKELLTRVDTLEAKAT---RINYERGDSSTGSVAHVEERIGELDSSQKSIVEMINGMSEDF

Query:  RAALDVVRNEIADVSARVNLTMRAIAIQAPTGGAIQVNKVKIPNPNPSMG
        RA LDVVRNEIADV+AR++LTMRA+A QAP GGAI V++VKIP P P  G
Subjt:  RAALDVVRNEIADVSARVNLTMRAIAIQAPTGGAIQVNKVKIPNPNPSMG

KAA0037220.1 reverse transcriptase [Cucumis melo var. makuwa]

2.0e-47

67.33

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Query:  MLYLLEIPDTVRFLKGRIEEVSEKAVAIDAVTDRLNGLPIKELLTRVDTLEAKAT---RINYERGDSSTGSVAHVEERIGELDSSQKSIVEMINGMSEDF
        MLYL+E+PD++R+L+ R+EE+SEK   IDAV  R+ G PI+EL+TRVD LE        +NYERGDSSTGSVAH+EER+ ELDSSQK+++EMINGMSEDF
Subjt:  MLYLLEIPDTVRFLKGRIEEVSEKAVAIDAVTDRLNGLPIKELLTRVDTLEAKAT---RINYERGDSSTGSVAHVEERIGELDSSQKSIVEMINGMSEDF

Query:  RAALDVVRNEIADVSARVNLTMRAIAIQAPTGGAIQVNKVKIPNPNPSMG
        RA LDVVRNEIADV+AR++LTMRA+A QAP GGAI V++VKIP P P  G
Subjt:  RAALDVVRNEIADVSARVNLTMRAIAIQAPTGGAIQVNKVKIPNPNPSMG

KAA0053339.1 reverse transcriptase [Cucumis melo var. makuwa]

6.8e-48

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Query:  MLYLLEIPDTVRFLKGRIEEVSEKAVAIDAVTDRLNGLPIKELLTRVDTLEAKAT---RINYERGDSSTGSVAHVEERIGELDSSQKSIVEMINGMSEDF
        MLYL+E+PD++R+L+ R+EE+SEK   IDAV  R+ G PI+EL+TRVD LE        +NYERGDSSTGSVAH+EER+ ELDSSQK+++EMINGMSEDF
Subjt:  MLYLLEIPDTVRFLKGRIEEVSEKAVAIDAVTDRLNGLPIKELLTRVDTLEAKAT---RINYERGDSSTGSVAHVEERIGELDSSQKSIVEMINGMSEDF

Query:  RAALDVVRNEIADVSARVNLTMRAIAIQAPTGGAIQVNKVKIPNPNPSMG
        RA LDVVRNEIADV+AR++LTMRA+A QAPTGGAI V++VKIP P P  G
Subjt:  RAALDVVRNEIADVSARVNLTMRAIAIQAPTGGAIQVNKVKIPNPNPSMG

KAA0063412.1 reverse transcriptase [Cucumis melo var. makuwa]

2.0e-47

67.33

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Query:  MLYLLEIPDTVRFLKGRIEEVSEKAVAIDAVTDRLNGLPIKELLTRVDTLEAKAT---RINYERGDSSTGSVAHVEERIGELDSSQKSIVEMINGMSEDF
        MLYL+E+PD++R+L+ R+EE+SEK   IDAV  R+ G PI+EL+TRVD LE        +NYERGDSSTGSVAH+EER+ ELDSSQK+++EMINGMSEDF
Subjt:  MLYLLEIPDTVRFLKGRIEEVSEKAVAIDAVTDRLNGLPIKELLTRVDTLEAKAT---RINYERGDSSTGSVAHVEERIGELDSSQKSIVEMINGMSEDF

Query:  RAALDVVRNEIADVSARVNLTMRAIAIQAPTGGAIQVNKVKIPNPNPSMG
        RA LDVVRNEIADV+AR++LTMRA+A QAP GGAI V++VKIP P P  G
Subjt:  RAALDVVRNEIADVSARVNLTMRAIAIQAPTGGAIQVNKVKIPNPNPSMG

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SKW3 Retrotrans_gag domain-containing protein

7.4e-48

67.33

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Query:  MLYLLEIPDTVRFLKGRIEEVSEKAVAIDAVTDRLNGLPIKELLTRVDTLEAKAT---RINYERGDSSTGSVAHVEERIGELDSSQKSIVEMINGMSEDF
        MLYL+E+PD++R+L+ R+EE+ +K   IDAVT R+ G PI+EL+TRVD LE        +NYERGDSSTGSVAH+EER+ ELDSSQK+++EMINGMSEDF
Subjt:  MLYLLEIPDTVRFLKGRIEEVSEKAVAIDAVTDRLNGLPIKELLTRVDTLEAKAT---RINYERGDSSTGSVAHVEERIGELDSSQKSIVEMINGMSEDF

Query:  RAALDVVRNEIADVSARVNLTMRAIAIQAPTGGAIQVNKVKIPNPNPSMG
        RA LDVVRNEIADV+AR+NLTMRA+A QAP GGAI V++VKIP P P  G
Subjt:  RAALDVVRNEIADVSARVNLTMRAIAIQAPTGGAIQVNKVKIPNPNPSMG

A0A5A7UIP7 Reverse transcriptase

3.3e-48

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Query:  MLYLLEIPDTVRFLKGRIEEVSEKAVAIDAVTDRLNGLPIKELLTRVDTLEAKAT---RINYERGDSSTGSVAHVEERIGELDSSQKSIVEMINGMSEDF
        MLYL+E+PD++R+L+ R+EE+SEK   IDAV  R+ G PI+EL+TRVD LE        +NYERGDSSTGSVAH+EER+ ELDSSQK+++EMINGMSEDF
Subjt:  MLYLLEIPDTVRFLKGRIEEVSEKAVAIDAVTDRLNGLPIKELLTRVDTLEAKAT---RINYERGDSSTGSVAHVEERIGELDSSQKSIVEMINGMSEDF

Query:  RAALDVVRNEIADVSARVNLTMRAIAIQAPTGGAIQVNKVKIPNPNPSMG
        RA LDVVRNEIADV+AR++LTMRA+A QAPTGGAI V++VKIP P P  G
Subjt:  RAALDVVRNEIADVSARVNLTMRAIAIQAPTGGAIQVNKVKIPNPNPSMG

A0A5D3BRZ6 Reverse transcriptase

9.6e-48

67.33

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Query:  MLYLLEIPDTVRFLKGRIEEVSEKAVAIDAVTDRLNGLPIKELLTRVDTLEAKAT---RINYERGDSSTGSVAHVEERIGELDSSQKSIVEMINGMSEDF
        MLYL+E+PD++R+L+ R+EE+SEK   IDAV  R+ G PI+EL+TRVD LE        +NYERGDSSTGSVAH+EER+ ELDSSQK+++EMINGMSEDF
Subjt:  MLYLLEIPDTVRFLKGRIEEVSEKAVAIDAVTDRLNGLPIKELLTRVDTLEAKAT---RINYERGDSSTGSVAHVEERIGELDSSQKSIVEMINGMSEDF

Query:  RAALDVVRNEIADVSARVNLTMRAIAIQAPTGGAIQVNKVKIPNPNPSMG
        RA LDVVRNEIADV+AR++LTMRA+A QAP GGAI V++VKIP P P  G
Subjt:  RAALDVVRNEIADVSARVNLTMRAIAIQAPTGGAIQVNKVKIPNPNPSMG

A0A5D3C4R1 Reverse transcriptase

9.6e-48

67.33

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Query:  MLYLLEIPDTVRFLKGRIEEVSEKAVAIDAVTDRLNGLPIKELLTRVDTLEAKAT---RINYERGDSSTGSVAHVEERIGELDSSQKSIVEMINGMSEDF
        MLYL+E+PD++R+L+ R+EE+SEK   IDAV  R+ G PI+EL+TRVD LE        +NYERGDSSTGSVAH+EER+ ELDSSQK+++EMINGMSEDF
Subjt:  MLYLLEIPDTVRFLKGRIEEVSEKAVAIDAVTDRLNGLPIKELLTRVDTLEAKAT---RINYERGDSSTGSVAHVEERIGELDSSQKSIVEMINGMSEDF

Query:  RAALDVVRNEIADVSARVNLTMRAIAIQAPTGGAIQVNKVKIPNPNPSMG
        RA LDVVRNEIADV+AR++LTMRA+A QAP GGAI V++VKIP P P  G
Subjt:  RAALDVVRNEIADVSARVNLTMRAIAIQAPTGGAIQVNKVKIPNPNPSMG

A0A5D3DQ20 Retrotrans_gag domain-containing protein

9.6e-48

67.33

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Query:  MLYLLEIPDTVRFLKGRIEEVSEKAVAIDAVTDRLNGLPIKELLTRVDTLEAKAT---RINYERGDSSTGSVAHVEERIGELDSSQKSIVEMINGMSEDF
        MLYL+E+PD++R+L+ R+EE+SEK   IDAV  R+ G PI+EL+TRVD LE        +NYERGDSSTGSVAH+EER+ ELDSSQK+++EMINGMSEDF
Subjt:  MLYLLEIPDTVRFLKGRIEEVSEKAVAIDAVTDRLNGLPIKELLTRVDTLEAKAT---RINYERGDSSTGSVAHVEERIGELDSSQKSIVEMINGMSEDF

Query:  RAALDVVRNEIADVSARVNLTMRAIAIQAPTGGAIQVNKVKIPNPNPSMG
        RA LDVVRNEIADV+AR++LTMRA+A QAP GGAI V++VKIP P P  G
Subjt:  RAALDVVRNEIADVSARVNLTMRAIAIQAPTGGAIQVNKVKIPNPNPSMG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGCTCTACCTGCTGGAAATTCCGGACACCGTCCGCTTCTTGAAAGGTCGGATTGAAGAAGTGTCCGAGAAAGCTGTTGCTATTGATGCGGTGACCGATCGCCTCAACGG
ATTACCTATAAAGGAGTTGTTAACAAGAGTTGACACTTTAGAGGCAAAGGCTACAAGAATAAACTACGAGCGTGGGGATAGTTCAACGGGCTCTGTGGCCCACGTAGAGG
AACGGATTGGCGAGCTAGATAGCTCTCAAAAGTCGATTGTCGAGATGATAAACGGCATGTCAGAGGATTTTCGTGCCGCCCTTGATGTCGTCAGGAATGAGATAGCAGAC
GTGAGCGCGAGGGTGAACCTTACAATGCGAGCCATTGCAATCCAAGCTCCAACTGGAGGAGCTATACAAGTTAACAAGGTGAAAATCCCGAACCCAAACCCTTCTATGGG
GTGA

mRNA sequence

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Protein sequence

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MLYLLEIPDTVRFLKGRIEEVSEKAVAIDAVTDRLNGLPIKELLTRVDTLEAKATRINYERGDSSTGSVAHVEERIGELDSSQKSIVEMINGMSEDFRAALDVVRNEIAD
VSARVNLTMRAIAIQAPTGGAIQVNKVKIPNPNPSMG

PI0024997 (gene) of Melon (PI 482460) v1 genome