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PI0025044 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0025044
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 297 family
Genome locationchr01:15344012..15345542
RNA-Seq ExpressionPI0025044
SyntenyPI0025044
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0066473.1 hypothetical protein E6C27_scaffold25G00080 [Cucumis melo var. makuwa]4.4e-5758.68Show/hide
Query:  MRGFRRNDSQSNTYNSRWRDHPNLRWGPQELKPTNTSSSSSSSQGTYLEEIVSKLALSSNSFKIDFEKNLAKLSEYIVSSTGVMKNDMEIMKASISEIGD
        M GFRRNDSQSNTYN  WR+HPNL WG QE KPTNTSSSSSSS GTYLEEI+SKLALSSNS KIDFEKNL KLSE  V+ST  MKND+EIMKASISE+GD
Subjt:  MRGFRRNDSQSNTYNSRWRDHPNLRWGPQELKPTNTSSSSSSSQGTYLEEIVSKLALSSNSFKIDFEKNLAKLSEYIVSSTGVMKNDMEIMKASISEIGD

Query:  KLNQLATHVLKTEGKCKLPTQPNLANVSAITLRSGKILNEN------DDSSNDHVSLC--ALDTLESLETLEKHDRFN--ELIDQDKPSHDDLS--TFLD
        KLNQLATHV+K E K KL  QPN AN      +  K +  N        S+ND  ++    L    S  +  + +  N  EL++  K    +L   T + 
Subjt:  KLNQLATHVLKTEGKCKLPTQPNLANVSAITLRSGKILNEN------DDSSNDHVSLC--ALDTLESLETLEKHDRFN--ELIDQDKPSHDDLS--TFLD

Query:  FVTSINDEHALVDNVTTHEQHALANNFATSNEHDLGRYIKDD
         + S+NDEH LVDN+TT+E HAL NNF +SNEHDLGR I +D
Subjt:  FVTSINDEHALVDNVTTHEQHALANNFATSNEHDLGRYIKDD

KAA0066992.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]1.1e-3942.31Show/hide
Query:  EKNLAKLSEYIVSSTGVMKNDMEIMKASISEIGDKLNQLATHVLKTEGKCKLPTQPNLANVSAITLRSGKILNENDD-----------------------
        + +  KLSE  V+ST  MKND+E MKASISE+G KLNQLAT+VLK EGK KLP Q N ANVS ITLRS K LN+NDD                       
Subjt:  EKNLAKLSEYIVSSTGVMKNDMEIMKASISEIGDKLNQLATHVLKTEGKCKLPTQPNLANVSAITLRSGKILNENDD-----------------------

Query:  ---------------------------------------------------------------------------------------SSNDHVSLCALDT
                                                                                               SSNDHVSLCALDT
Subjt:  ---------------------------------------------------------------------------------------SSNDHVSLCALDT

Query:  LESLETLEKHDRFNELIDQ------------DKPSHDDLSTFLDFVTSINDEHALVDNVTTHEQHALANNFATSNEHDLGRYIKDD
        LESLE LE+HD FNELIDQ            +KPS DDLS FL FV S+NDEH  VDN+ T+EQHAL N+F +SNEHDLGR IKDD
Subjt:  LESLETLEKHDRFNELIDQ------------DKPSHDDLSTFLDFVTSINDEHALVDNVTTHEQHALANNFATSNEHDLGRYIKDD

KAE8647060.1 hypothetical protein Csa_022980 [Cucumis sativus]1.9e-6038.74Show/hide
Query:  GFRRNDSQSNTYNSRWRDHPNLRWGPQELKPTNTSSSSSSSQGTYLEEIVSKLALSSNSFKIDFEKNLAKLSEYIVSSTGVMKNDMEIMKASISEIGDKL
        G+RRNDSQSN YNS WRD P+LRWGPQE K  NT  S+SSS+GTYLEEIVSKLA SSN+FK DFEKNLAKLSEY VSSTG +KND+E MKASISE+G+KL
Subjt:  GFRRNDSQSNTYNSRWRDHPNLRWGPQELKPTNTSSSSSSSQGTYLEEIVSKLALSSNSFKIDFEKNLAKLSEYIVSSTGVMKNDMEIMKASISEIGDKL

Query:  NQLATHVLKTEGKCKLPTQPNLANVSAITLRSGKILNENDD-----------------------------------------------------------
        +QLA   LKTEGK KLP QPN ANVSAITLRSGK+LNENDD                                                           
Subjt:  NQLATHVLKTEGKCKLPTQPNLANVSAITLRSGKILNENDD-----------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -------------------------------------------------------------------------SSNDHVSLCALDTLESLETLEKHDRFN
                                                                                 SSNDHVSLCALDTLESLETLE+ D+ N
Subjt:  -------------------------------------------------------------------------SSNDHVSLCALDTLESLETLEKHDRFN

Query:  ELIDQ------------DKPSHDDLSTFLDFVTSINDEHALVDNVTTHEQHALANNFATSNEHDLGRYIKDDGEQ
        ELIDQ            +KPS DDLS FL+FV SINDEHALVDNVTTH+QHAL NNFA+S E DLGR IKD+ EQ
Subjt:  ELIDQ------------DKPSHDDLSTFLDFVTSINDEHALVDNVTTHEQHALANNFATSNEHDLGRYIKDDGEQ

TYK02152.1 hypothetical protein E5676_scaffold388G00420 [Cucumis melo var. makuwa]9.2e-3940.06Show/hide
Query:  MRGFRRNDSQSNTYNSRWRDHPNLRWGPQELKPTNTSSSSSSSQGTYLEEIVSKLALSSNSFKIDFEKNLAKLSEYIVSSTGVMKNDMEIMKASISEIGD
        M G +RNDSQ+NTYNS WRDHP L W  QE KPTNTSS SSSS                           AKLSE+ V+STG MKND+EIMKASI E+GD
Subjt:  MRGFRRNDSQSNTYNSRWRDHPNLRWGPQELKPTNTSSSSSSSQGTYLEEIVSKLALSSNSFKIDFEKNLAKLSEYIVSSTGVMKNDMEIMKASISEIGD

Query:  KLNQLATHVLKTEGKCKLPTQPNLA-------------------------------NVSAIT--------------------------------------
        KLNQLAT VLKTEGK KLPTQPN A                               N+S +T                                      
Subjt:  KLNQLATHVLKTEGKCKLPTQPNLA-------------------------------NVSAIT--------------------------------------

Query:  ------------------------LRSGKILNENDDS---------------------SNDHVSLCALDTLESLETLEKHDRFNELIDQ-----------
                                L++ KI+   D                       SNDHVSLCALDTLESLETLE+HD F+ELIDQ           
Subjt:  ------------------------LRSGKILNENDDS---------------------SNDHVSLCALDTLESLETLEKHDRFNELIDQ-----------

Query:  -DKPSHDDLSTFLDFVTSINDEHALVDNVTTH
         +KPS +DLS FLDFV S+NDEH LVDN+ T+
Subjt:  -DKPSHDDLSTFLDFVTSINDEHALVDNVTTH

TYK27330.1 hypothetical protein E5676_scaffold394G00160 [Cucumis melo var. makuwa]1.5e-4471.92Show/hide
Query:  MRGFRRNDSQSNTYNSRWRDHPNLRWGPQELKPTNTSSSSSSSQGTYLEEIVSKLALSSNSFKIDFEKNLAKLSEYIVSSTGVMKNDMEIMKASISEIGD
        M GFRRNDSQSNTYN  WR+HPNL WG QE KPTNTSSSSSSS GTYLEEI+SKLALSSNS KIDFEKNL KLSE  V+ST  MKND+EIMKASISE+GD
Subjt:  MRGFRRNDSQSNTYNSRWRDHPNLRWGPQELKPTNTSSSSSSSQGTYLEEIVSKLALSSNSFKIDFEKNLAKLSEYIVSSTGVMKNDMEIMKASISEIGD

Query:  KLNQLATHVLKTEGKCKLPTQPNLANVSAITLRSGKILNENDDSSN
        KLNQLATHV+K E K KL  QPN AN      +  K +  N   SN
Subjt:  KLNQLATHVLKTEGKCKLPTQPNLANVSAITLRSGKILNENDDSSN

TrEMBL top hitse value%identityAlignment
A0A0A0KEQ8 Uncharacterized protein5.4e-4577.61Show/hide
Query:  GFRRNDSQSNTYNSRWRDHPNLRWGPQELKPTNTSSSSSSSQGTYLEEIVSKLALSSNSFKIDFEKNLAKLSEYIVSSTGVMKNDMEIMKASISEIGDKL
        G+RRNDSQSN YNS WRD P+LRWGPQE K  NT  S+SSS+GTYLEEIVSKLA SSN+FK DFEKNLAKLSEY VSSTG +KND+E MKASISE+G+KL
Subjt:  GFRRNDSQSNTYNSRWRDHPNLRWGPQELKPTNTSSSSSSSQGTYLEEIVSKLALSSNSFKIDFEKNLAKLSEYIVSSTGVMKNDMEIMKASISEIGDKL

Query:  NQLATHVLKTEGKCKLPTQPNLANVSAITLRSGK
        +QLA   LKTEGK KLP QPN ANVSAITLRS K
Subjt:  NQLATHVLKTEGKCKLPTQPNLANVSAITLRSGK

A0A5A7VEJ8 Uncharacterized protein2.1e-5758.68Show/hide
Query:  MRGFRRNDSQSNTYNSRWRDHPNLRWGPQELKPTNTSSSSSSSQGTYLEEIVSKLALSSNSFKIDFEKNLAKLSEYIVSSTGVMKNDMEIMKASISEIGD
        M GFRRNDSQSNTYN  WR+HPNL WG QE KPTNTSSSSSSS GTYLEEI+SKLALSSNS KIDFEKNL KLSE  V+ST  MKND+EIMKASISE+GD
Subjt:  MRGFRRNDSQSNTYNSRWRDHPNLRWGPQELKPTNTSSSSSSSQGTYLEEIVSKLALSSNSFKIDFEKNLAKLSEYIVSSTGVMKNDMEIMKASISEIGD

Query:  KLNQLATHVLKTEGKCKLPTQPNLANVSAITLRSGKILNEN------DDSSNDHVSLC--ALDTLESLETLEKHDRFN--ELIDQDKPSHDDLS--TFLD
        KLNQLATHV+K E K KL  QPN AN      +  K +  N        S+ND  ++    L    S  +  + +  N  EL++  K    +L   T + 
Subjt:  KLNQLATHVLKTEGKCKLPTQPNLANVSAITLRSGKILNEN------DDSSNDHVSLC--ALDTLESLETLEKHDRFN--ELIDQDKPSHDDLS--TFLD

Query:  FVTSINDEHALVDNVTTHEQHALANNFATSNEHDLGRYIKDD
         + S+NDEH LVDN+TT+E HAL NNF +SNEHDLGR I +D
Subjt:  FVTSINDEHALVDNVTTHEQHALANNFATSNEHDLGRYIKDD

A0A5D3BDS0 Transposon Ty3-I Gag-Pol polyprotein5.3e-4042.31Show/hide
Query:  EKNLAKLSEYIVSSTGVMKNDMEIMKASISEIGDKLNQLATHVLKTEGKCKLPTQPNLANVSAITLRSGKILNENDD-----------------------
        + +  KLSE  V+ST  MKND+E MKASISE+G KLNQLAT+VLK EGK KLP Q N ANVS ITLRS K LN+NDD                       
Subjt:  EKNLAKLSEYIVSSTGVMKNDMEIMKASISEIGDKLNQLATHVLKTEGKCKLPTQPNLANVSAITLRSGKILNENDD-----------------------

Query:  ---------------------------------------------------------------------------------------SSNDHVSLCALDT
                                                                                               SSNDHVSLCALDT
Subjt:  ---------------------------------------------------------------------------------------SSNDHVSLCALDT

Query:  LESLETLEKHDRFNELIDQ------------DKPSHDDLSTFLDFVTSINDEHALVDNVTTHEQHALANNFATSNEHDLGRYIKDD
        LESLE LE+HD FNELIDQ            +KPS DDLS FL FV S+NDEH  VDN+ T+EQHAL N+F +SNEHDLGR IKDD
Subjt:  LESLETLEKHDRFNELIDQ------------DKPSHDDLSTFLDFVTSINDEHALVDNVTTHEQHALANNFATSNEHDLGRYIKDD

A0A5D3BTM3 Uncharacterized protein4.5e-3940.06Show/hide
Query:  MRGFRRNDSQSNTYNSRWRDHPNLRWGPQELKPTNTSSSSSSSQGTYLEEIVSKLALSSNSFKIDFEKNLAKLSEYIVSSTGVMKNDMEIMKASISEIGD
        M G +RNDSQ+NTYNS WRDHP L W  QE KPTNTSS SSSS                           AKLSE+ V+STG MKND+EIMKASI E+GD
Subjt:  MRGFRRNDSQSNTYNSRWRDHPNLRWGPQELKPTNTSSSSSSSQGTYLEEIVSKLALSSNSFKIDFEKNLAKLSEYIVSSTGVMKNDMEIMKASISEIGD

Query:  KLNQLATHVLKTEGKCKLPTQPNLA-------------------------------NVSAIT--------------------------------------
        KLNQLAT VLKTEGK KLPTQPN A                               N+S +T                                      
Subjt:  KLNQLATHVLKTEGKCKLPTQPNLA-------------------------------NVSAIT--------------------------------------

Query:  ------------------------LRSGKILNENDDS---------------------SNDHVSLCALDTLESLETLEKHDRFNELIDQ-----------
                                L++ KI+   D                       SNDHVSLCALDTLESLETLE+HD F+ELIDQ           
Subjt:  ------------------------LRSGKILNENDDS---------------------SNDHVSLCALDTLESLETLEKHDRFNELIDQ-----------

Query:  -DKPSHDDLSTFLDFVTSINDEHALVDNVTTH
         +KPS +DLS FLDFV S+NDEH LVDN+ T+
Subjt:  -DKPSHDDLSTFLDFVTSINDEHALVDNVTTH

A0A5D3DVM3 Uncharacterized protein7.1e-4571.92Show/hide
Query:  MRGFRRNDSQSNTYNSRWRDHPNLRWGPQELKPTNTSSSSSSSQGTYLEEIVSKLALSSNSFKIDFEKNLAKLSEYIVSSTGVMKNDMEIMKASISEIGD
        M GFRRNDSQSNTYN  WR+HPNL WG QE KPTNTSSSSSSS GTYLEEI+SKLALSSNS KIDFEKNL KLSE  V+ST  MKND+EIMKASISE+GD
Subjt:  MRGFRRNDSQSNTYNSRWRDHPNLRWGPQELKPTNTSSSSSSSQGTYLEEIVSKLALSSNSFKIDFEKNLAKLSEYIVSSTGVMKNDMEIMKASISEIGD

Query:  KLNQLATHVLKTEGKCKLPTQPNLANVSAITLRSGKILNENDDSSN
        KLNQLATHV+K E K KL  QPN AN      +  K +  N   SN
Subjt:  KLNQLATHVLKTEGKCKLPTQPNLANVSAITLRSGKILNENDDSSN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGGTTTTAGAAGAAATGATTCACAGAGTAACACCTACAACTCTAGGTGGAGGGATCATCCAAATCTTAGGTGGGGACCTCAAGAACTAAAACCTACCAACACTTC
TTCTTCCTCATCATCATCACAAGGTACGTACTTAGAGGAGATAGTCTCCAAGTTAGCTCTTAGCTCAAATAGTTTTAAAATTGATTTTGAAAAGAACTTAGCTAAGTTGA
GTGAATATATTGTTAGTTCAACTGGAGTCATGAAAAATGATATGGAAATCATGAAAGCATCCATTTCTGAGATAGGAGATAAACTTAATCAATTAGCAACACACGTTCTT
AAAACGGAAGGGAAATGCAAACTTCCCACCCAACCCAACCTTGCAAATGTGAGTGCTATTACTTTAAGAAGTGGCAAAATTTTGAATGAAAATGATGATTCCTCTAATGA
TCATGTTTCATTGTGTGCACTTGATACTTTAGAATCATTAGAGACATTAGAAAAACATGATAGATTCAATGAGCTTATAGATCAAGATAAACCTAGTCATGATGATCTTT
CTACCTTCCTTGACTTTGTTACTAGTATAAATGATGAGCATGCTTTGGTTGATAATGTTACAACACATGAACAACATGCTCTAGCTAATAATTTTGCAACTAGTAACGAA
CATGATCTAGGAAGATACATTAAAGATGATGGTGAACAACTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGAGGTTTTAGAAGAAATGATTCACAGAGTAACACCTACAACTCTAGGTGGAGGGATCATCCAAATCTTAGGTGGGGACCTCAAGAACTAAAACCTACCAACACTTC
TTCTTCCTCATCATCATCACAAGGTACGTACTTAGAGGAGATAGTCTCCAAGTTAGCTCTTAGCTCAAATAGTTTTAAAATTGATTTTGAAAAGAACTTAGCTAAGTTGA
GTGAATATATTGTTAGTTCAACTGGAGTCATGAAAAATGATATGGAAATCATGAAAGCATCCATTTCTGAGATAGGAGATAAACTTAATCAATTAGCAACACACGTTCTT
AAAACGGAAGGGAAATGCAAACTTCCCACCCAACCCAACCTTGCAAATGTGAGTGCTATTACTTTAAGAAGTGGCAAAATTTTGAATGAAAATGATGATTCCTCTAATGA
TCATGTTTCATTGTGTGCACTTGATACTTTAGAATCATTAGAGACATTAGAAAAACATGATAGATTCAATGAGCTTATAGATCAAGATAAACCTAGTCATGATGATCTTT
CTACCTTCCTTGACTTTGTTACTAGTATAAATGATGAGCATGCTTTGGTTGATAATGTTACAACACATGAACAACATGCTCTAGCTAATAATTTTGCAACTAGTAACGAA
CATGATCTAGGAAGATACATTAAAGATGATGGTGAACAACTTTAG
Protein sequenceShow/hide protein sequence
MRGFRRNDSQSNTYNSRWRDHPNLRWGPQELKPTNTSSSSSSSQGTYLEEIVSKLALSSNSFKIDFEKNLAKLSEYIVSSTGVMKNDMEIMKASISEIGDKLNQLATHVL
KTEGKCKLPTQPNLANVSAITLRSGKILNENDDSSNDHVSLCALDTLESLETLEKHDRFNELIDQDKPSHDDLSTFLDFVTSINDEHALVDNVTTHEQHALANNFATSNE
HDLGRYIKDDGEQL