CuGenDBv2

Gene ID	PI0025052
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Reverse transcriptase domain-containing protein
Genome location	chr05:8561944..8563215
RNA-Seq Expression	PI0025052
Synteny	PI0025052
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0026071.1 uncharacterized protein E6C27_scaffold581G00620 [Cucumis melo var. makuwa]

2.8e-26

73.81

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Query:  CVPLILRITSRIRSWSTRVLFFAGRLQLVRSVLQSFQVFWASVFVLPASVHHEVDRLLMSYLWRGKEIGRGGAKVAWTECFVVF
        C PLI RITS+IRSW+ RVL FAGRLQLVRSVL+S QV+WASVFVLPA VH+EVD++L SYLWRGKE GRGG KVAW +  + F
Subjt:  CVPLILRITSRIRSWSTRVLFFAGRLQLVRSVLQSFQVFWASVFVLPASVHHEVDRLLMSYLWRGKEIGRGGAKVAWTECFVVF

KAA0046851.1 uncharacterized protein E6C27_scaffold19358G00020 [Cucumis melo var. makuwa]

9.5e-27

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Query:  CVPLILRITSRIRSWSTRVLFFAGRLQLVRSVLQSFQVFWASVFVLPASVHHEVDRLLMSYLWRGKEIGRGGAKVAWTECFVVF
        C PLI RITSRIRSW+ RVL FAGRLQLVRSVL+S QV+WASVFVLPA VH+EVD++L SYLWRGKE GRGG KVAW +  + F
Subjt:  CVPLILRITSRIRSWSTRVLFFAGRLQLVRSVLQSFQVFWASVFVLPASVHHEVDRLLMSYLWRGKEIGRGGAKVAWTECFVVF

KAA0059752.1 F17F8.5 [Cucumis melo var. makuwa]

2.1e-26

62.16

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Query:  PLILRITSRIRSWSTRVLFFAGRLQLVRSVLQSFQVFWASVFVLPASVHHEVDRLLMSYLWRGKEIGRGGAKVAWTECFVVFMVMFVLLSFSGSRALASG
        PLI RITSRIRSW+ RVL FAGRLQLVR VL+S QV+WASVFVLPA VHHEVD++L+SYLWRGKE GRGG KVAW +  + F    + +    S  +AS 
Subjt:  PLILRITSRIRSWSTRVLFFAGRLQLVRSVLQSFQVFWASVFVLPASVHHEVDRLLMSYLWRGKEIGRGGAKVAWTECFVVFMVMFVLLSFSGSRALASG

Query:  CEDLLLLIDAS
         + LLL++  S
Subjt:  CEDLLLLIDAS

TYK28099.1 uncharacterized protein E5676_scaffold1467G00020 [Cucumis melo var. makuwa]

2.8e-26

73.81

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Query:  CVPLILRITSRIRSWSTRVLFFAGRLQLVRSVLQSFQVFWASVFVLPASVHHEVDRLLMSYLWRGKEIGRGGAKVAWTECFVVF
        C PLI RITS+IRSW+ RVL FAGRLQLVRSVL+S QV+WASVFVLPA VH+EVD++L SYLWRGKE GRGG KVAW +  + F
Subjt:  CVPLILRITSRIRSWSTRVLFFAGRLQLVRSVLQSFQVFWASVFVLPASVHHEVDRLLMSYLWRGKEIGRGGAKVAWTECFVVF

XP_031737043.1 uncharacterized protein LOC116402131 [Cucumis sativus]

2.1e-26

62.73

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Query:  CVPLILRITSRIRSWSTRVLFFAGRLQLVRSVLQSFQVFWASVFVLPASVHHEVDRLLMSYLWRGKEIGRGGAKVAWTECFVVFMVMFVLLSFSGSRALA
        C PLI RITSRIRSWS RVL FAGRLQLVRSVL+S QV+WASVF+LP  VH +VD++L SYLWRGKE GRGGAKVAW E  + F    + +    S  +A
Subjt:  CVPLILRITSRIRSWSTRVLFFAGRLQLVRSVLQSFQVFWASVFVLPASVHHEVDRLLMSYLWRGKEIGRGGAKVAWTECFVVFMVMFVLLSFSGSRALA

Query:  SGCEDLLLLI
        S  + L LL+
Subjt:  SGCEDLLLLI

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SPE5 Reverse transcriptase domain-containing protein

1.3e-26

73.81

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Query:  CVPLILRITSRIRSWSTRVLFFAGRLQLVRSVLQSFQVFWASVFVLPASVHHEVDRLLMSYLWRGKEIGRGGAKVAWTECFVVF
        C PLI RITS+IRSW+ RVL FAGRLQLVRSVL+S QV+WASVFVLPA VH+EVD++L SYLWRGKE GRGG KVAW +  + F
Subjt:  CVPLILRITSRIRSWSTRVLFFAGRLQLVRSVLQSFQVFWASVFVLPASVHHEVDRLLMSYLWRGKEIGRGGAKVAWTECFVVF

A0A5A7TZS0 Reverse transcriptase domain-containing protein

4.6e-27

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Query:  CVPLILRITSRIRSWSTRVLFFAGRLQLVRSVLQSFQVFWASVFVLPASVHHEVDRLLMSYLWRGKEIGRGGAKVAWTECFVVF
        C PLI RITSRIRSW+ RVL FAGRLQLVRSVL+S QV+WASVFVLPA VH+EVD++L SYLWRGKE GRGG KVAW +  + F
Subjt:  CVPLILRITSRIRSWSTRVLFFAGRLQLVRSVLQSFQVFWASVFVLPASVHHEVDRLLMSYLWRGKEIGRGGAKVAWTECFVVF

A0A5A7UV01 F17F8.5

1.0e-26

62.16

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Query:  PLILRITSRIRSWSTRVLFFAGRLQLVRSVLQSFQVFWASVFVLPASVHHEVDRLLMSYLWRGKEIGRGGAKVAWTECFVVFMVMFVLLSFSGSRALASG
        PLI RITSRIRSW+ RVL FAGRLQLVR VL+S QV+WASVFVLPA VHHEVD++L+SYLWRGKE GRGG KVAW +  + F    + +    S  +AS 
Subjt:  PLILRITSRIRSWSTRVLFFAGRLQLVRSVLQSFQVFWASVFVLPASVHHEVDRLLMSYLWRGKEIGRGGAKVAWTECFVVFMVMFVLLSFSGSRALASG

Query:  CEDLLLLIDAS
         + LLL++  S
Subjt:  CEDLLLLIDAS

A0A5A7V3Z0 Reverse transcriptase domain-containing protein

3.9e-26

75.61

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Query:  PLILRITSRIRSWSTRVLFFAGRLQLVRSVLQSFQVFWASVFVLPASVHHEVDRLLMSYLWRGKEIGRGGAKVAWTECFVVF
        PLI RITSRIRSW+ RVL FAGRLQLV SVL+SFQV+WASVFVLPA VH+EVD++L SYLWRGKE GRGG KVAW +  + F
Subjt:  PLILRITSRIRSWSTRVLFFAGRLQLVRSVLQSFQVFWASVFVLPASVHHEVDRLLMSYLWRGKEIGRGGAKVAWTECFVVF

A0A5D3DXE4 Reverse transcriptase domain-containing protein

1.3e-26

73.81

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Query:  CVPLILRITSRIRSWSTRVLFFAGRLQLVRSVLQSFQVFWASVFVLPASVHHEVDRLLMSYLWRGKEIGRGGAKVAWTECFVVF
        C PLI RITS+IRSW+ RVL FAGRLQLVRSVL+S QV+WASVFVLPA VH+EVD++L SYLWRGKE GRGG KVAW +  + F
Subjt:  CVPLILRITSRIRSWSTRVLFFAGRLQLVRSVLQSFQVFWASVFVLPASVHHEVDRLLMSYLWRGKEIGRGGAKVAWTECFVVF

SwissProt top hits

e value

%identity

Alignment

P0C2F6 Putative ribonuclease H protein At1g65750

9.6e-06

32.89

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Query:  LILRITSRIRSWSTRVLFFAGRLQLVRSVLQSFQVFWASVFVLPASVHHEVDRLLMSYLWRGKEIGRGGAKVAWTE
        ++ R++SR+  W  + L FAGRL L ++VL S  V   S  +LP S+ + +D+L  ++LW      +    V W++
Subjt:  LILRITSRIRSWSTRVLFFAGRLQLVRSVLQSFQVFWASVFVLPASVHHEVDRLLMSYLWRGKEIGRGGAKVAWTE

Arabidopsis top hits

e value

%identity

Alignment

AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

2.0e-14

46.75

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Query:  PLILRITSRIRSWSTRVLFFAGRLQLVRSVLQSFQVFWASVFVLPASVHHEVDRLLMSYLWRGKEIGRGGAKVAWTE
        PL+ +I  RI  W+ R L FAGRLQL+ SV+ S   FW S F LP++   E+D +  S+LW G E+    AKVAW++
Subjt:  PLILRITSRIRSWSTRVLFFAGRLQLVRSVLQSFQVFWASVFVLPASVHHEVDRLLMSYLWRGKEIGRGGAKVAWTE

Sequences

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CDS sequence

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ATGGCCAACGCATCAAAGAGTGGCGAAGTTGTGGTCAGTGTTACAAATAACCGAAAATGTGTGCCGCTCATCCTGCGTATTACTAGTAGGATTCGGTCTTGGTCGACTAG
AGTTTTGTTCTTCGCTGGGAGACTTCAGCTTGTTCGTTCGGTGTTGCAAAGCTTTCAGGTCTTTTGGGCTAGTGTGTTTGTTTTGCCAGCAAGTGTGCATCATGAGGTTG
ATAGGCTTTTGATGTCGTATCTCTGGAGGGGCAAGGAGATTGGGAGAGGGGGTGCGAAGGTTGCGTGGACTGAGTGTTTCGTGGTTTTTATGGTTATGTTTGTCCTTTTG
AGCTTTTCTGGCTCTCGTGCCTTGGCCTCGGGCTGTGAAGACCTCCTTCTATTAATCGATGCTAGTTTGGATGGTCCAACTCGCACAGCATCCCAAAGTGTCGCGATGTT
AGTAAGGCGATTTGGGGCGGGGTGTGACACAAAGACTTTAGTCTAA

mRNA sequence

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Protein sequence

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MANASKSGEVVVSVTNNRKCVPLILRITSRIRSWSTRVLFFAGRLQLVRSVLQSFQVFWASVFVLPASVHHEVDRLLMSYLWRGKEIGRGGAKVAWTECFVVFMVMFVLL
SFSGSRALASGCEDLLLLIDASLDGPTRTASQSVAMLVRRFGAGCDTKTLV

PI0025052 (gene) of Melon (PI 482460) v1 genome