CuGenDBv2

Gene ID	PI0025081
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Exportin-T
Genome location	chr05:8512311..8514150
RNA-Seq Expression	PI0025081
Synteny	PI0025081
Gene Ontology terms	GO:0071528 - tRNA re-export from nucleus (biological process) GO:0005643 - nuclear pore (cellular component) GO:0005737 - cytoplasm (cellular component) GO:0016363 - nuclear matrix (cellular component) GO:0000049 - tRNA binding (molecular function) GO:0031267 - small GTPase binding (molecular function)
InterPro domains	IPR011989 - Armadillo-like helical

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004141704.1 exportin-T [Cucumis sativus]

8.1e-23

87.88

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Query:  FPIFQKALEQSLAESEPKEVVGFPVLLNQLICKFSTSVHGILEDVFPTIASQIFNIIPRDSLPSGP
        FP   KALEQ LAESEPKE+VGF VLLNQLICKFSTSVHGILEDVFPTI S+IFNIIPRDSLPSGP
Subjt:  FPIFQKALEQSLAESEPKEVVGFPVLLNQLICKFSTSVHGILEDVFPTIASQIFNIIPRDSLPSGP

XP_008462297.1 PREDICTED: exportin-T [Cucumis melo]

3.6e-23

87.88

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Query:  FPIFQKALEQSLAESEPKEVVGFPVLLNQLICKFSTSVHGILEDVFPTIASQIFNIIPRDSLPSGP
        FP   KALEQ LAESEPKE+VGF VLLNQLICKFSTSVHGILEDVFPTIAS+IFN+IPRDSLPSGP
Subjt:  FPIFQKALEQSLAESEPKEVVGFPVLLNQLICKFSTSVHGILEDVFPTIASQIFNIIPRDSLPSGP

XP_022149034.1 exportin-T [Momordica charantia]

1.4e-22

87.88

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Query:  FPIFQKALEQSLAESEPKEVVGFPVLLNQLICKFSTSVHGILEDVFPTIASQIFNIIPRDSLPSGP
        FP   KALEQ LAESEPKE+VGF VLLNQLICKFSTSVHGILEDVFPTIAS+IFNIIP DSLPSGP
Subjt:  FPIFQKALEQSLAESEPKEVVGFPVLLNQLICKFSTSVHGILEDVFPTIASQIFNIIPRDSLPSGP

XP_022953461.1 exportin-T-like [Cucurbita moschata]

6.8e-22

84.85

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Query:  FPIFQKALEQSLAESEPKEVVGFPVLLNQLICKFSTSVHGILEDVFPTIASQIFNIIPRDSLPSGP
        FP   KALEQ L ESEPKE+VGF VLLNQLICKFSTSVHGILEDVFPTIAS+IF+IIPRDS+PSGP
Subjt:  FPIFQKALEQSLAESEPKEVVGFPVLLNQLICKFSTSVHGILEDVFPTIASQIFNIIPRDSLPSGP

XP_038898562.1 exportin-T [Benincasa hispida]

2.8e-23

89.39

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Query:  FPIFQKALEQSLAESEPKEVVGFPVLLNQLICKFSTSVHGILEDVFPTIASQIFNIIPRDSLPSGP
        FP   KALEQ LAESEPKE+VGF VLLNQLICKFSTSVHGILEDVFPTIAS+IFNIIPRDSLPSGP
Subjt:  FPIFQKALEQSLAESEPKEVVGFPVLLNQLICKFSTSVHGILEDVFPTIASQIFNIIPRDSLPSGP

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K6Z9 Exportin-T

3.9e-23

87.88

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Query:  FPIFQKALEQSLAESEPKEVVGFPVLLNQLICKFSTSVHGILEDVFPTIASQIFNIIPRDSLPSGP
        FP   KALEQ LAESEPKE+VGF VLLNQLICKFSTSVHGILEDVFPTI S+IFNIIPRDSLPSGP
Subjt:  FPIFQKALEQSLAESEPKEVVGFPVLLNQLICKFSTSVHGILEDVFPTIASQIFNIIPRDSLPSGP

A0A1S3CI57 Exportin-T

1.8e-23

87.88

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Query:  FPIFQKALEQSLAESEPKEVVGFPVLLNQLICKFSTSVHGILEDVFPTIASQIFNIIPRDSLPSGP
        FP   KALEQ LAESEPKE+VGF VLLNQLICKFSTSVHGILEDVFPTIAS+IFN+IPRDSLPSGP
Subjt:  FPIFQKALEQSLAESEPKEVVGFPVLLNQLICKFSTSVHGILEDVFPTIASQIFNIIPRDSLPSGP

A0A5A7UYX4 Exportin-T

1.8e-23

87.88

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Query:  FPIFQKALEQSLAESEPKEVVGFPVLLNQLICKFSTSVHGILEDVFPTIASQIFNIIPRDSLPSGP
        FP   KALEQ LAESEPKE+VGF VLLNQLICKFSTSVHGILEDVFPTIAS+IFN+IPRDSLPSGP
Subjt:  FPIFQKALEQSLAESEPKEVVGFPVLLNQLICKFSTSVHGILEDVFPTIASQIFNIIPRDSLPSGP

A0A6J1D5T7 Exportin-T

6.7e-23

87.88

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Query:  FPIFQKALEQSLAESEPKEVVGFPVLLNQLICKFSTSVHGILEDVFPTIASQIFNIIPRDSLPSGP
        FP   KALEQ LAESEPKE+VGF VLLNQLICKFSTSVHGILEDVFPTIAS+IFNIIP DSLPSGP
Subjt:  FPIFQKALEQSLAESEPKEVVGFPVLLNQLICKFSTSVHGILEDVFPTIASQIFNIIPRDSLPSGP

A0A6J1GNA6 Exportin-T

3.3e-22

84.85

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Query:  FPIFQKALEQSLAESEPKEVVGFPVLLNQLICKFSTSVHGILEDVFPTIASQIFNIIPRDSLPSGP
        FP   KALEQ L ESEPKE+VGF VLLNQLICKFSTSVHGILEDVFPTIAS+IF+IIPRDS+PSGP
Subjt:  FPIFQKALEQSLAESEPKEVVGFPVLLNQLICKFSTSVHGILEDVFPTIASQIFNIIPRDSLPSGP

SwissProt top hits

e value

%identity

Alignment

Q7PC79 Exportin-T

1.7e-20

66.67

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Query:  FPIFQKALEQSLAESEPKEVVGFPVLLNQLICKFSTSVHGILEDVFPTIASQIFNIIPRDSLPSGPEAI
        FP   KALEQ LA+SEPKE+VGF VLLNQLICKF++++H ILE+V+P +A +IFN+IPRD LPS P A+
Subjt:  FPIFQKALEQSLAESEPKEVVGFPVLLNQLICKFSTSVHGILEDVFPTIASQIFNIIPRDSLPSGPEAI

Q8H3A7 Exportin-T

3.4e-08

43.75

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Query:  PIFQKALEQSLAESEPKEVVGFPVLLNQLICKFSTSVHGILEDVFPTIASQIFNIIPRDSLPSG
        P    AL Q L ++E K++  F  L+NQ+ICKF +S + +LEDVFP IAS +  I+  D+  +G
Subjt:  PIFQKALEQSLAESEPKEVVGFPVLLNQLICKFSTSVHGILEDVFPTIASQIFNIIPRDSLPSG

Arabidopsis top hits

e value

%identity

Alignment

AT1G72560.1 ARM repeat superfamily protein

1.2e-21

66.67

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Query:  FPIFQKALEQSLAESEPKEVVGFPVLLNQLICKFSTSVHGILEDVFPTIASQIFNIIPRDSLPSGPEAI
        FP   KALEQ LA+SEPKE+VGF VLLNQLICKF++++H ILE+V+P +A +IFN+IPRD LPS P A+
Subjt:  FPIFQKALEQSLAESEPKEVVGFPVLLNQLICKFSTSVHGILEDVFPTIASQIFNIIPRDSLPSGPEAI

AT1G72560.2 ARM repeat superfamily protein

1.2e-21

66.67

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Query:  FPIFQKALEQSLAESEPKEVVGFPVLLNQLICKFSTSVHGILEDVFPTIASQIFNIIPRDSLPSGPEAI
        FP   KALEQ LA+SEPKE+VGF VLLNQLICKF++++H ILE+V+P +A +IFN+IPRD LPS P A+
Subjt:  FPIFQKALEQSLAESEPKEVVGFPVLLNQLICKFSTSVHGILEDVFPTIASQIFNIIPRDSLPSGPEAI

AT1G72560.3 ARM repeat superfamily protein

1.2e-21

66.67

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Query:  FPIFQKALEQSLAESEPKEVVGFPVLLNQLICKFSTSVHGILEDVFPTIASQIFNIIPRDSLPSGPEAI
        FP   KALEQ LA+SEPKE+VGF VLLNQLICKF++++H ILE+V+P +A +IFN+IPRD LPS P A+
Subjt:  FPIFQKALEQSLAESEPKEVVGFPVLLNQLICKFSTSVHGILEDVFPTIASQIFNIIPRDSLPSGPEAI

Sequences

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CDS sequence

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ATGTCACTCCAAGCCACCGATCCAGACACTCTCTTGCTCCAAGCAACCGATCCAACACCGACGACTCCTATTCCAAGCCACCAGTCTCGATGCATGCGGGATTCAACAGT
GTTTGGAGTCAACAACTTGTGGCTAAGGCTAACAATGAAGATGGCTAGGTGCCTCTACGGACTAAGGTCCTCTCTTTTATACATCGAATGGTGGAAACTTTCCGCACATC
TGTTTTTCCCTATATTCCAAAAGGCTTTGGAGCAGTCGCTTGCAGAAAGTGAGCCGAAGGAGGTGGTTGGTTTCCCTGTGTTACTTAATCAACTAATCTGCAAGTTCAGC
ACTTCGGTCCATGGGATTTTGGAGGATGTATTTCCAACAATTGCTAGTCAGATTTTCAACATTATACCAAGAGATTCTCTTCCTTCAGGACCGGAAGCAATATTGAGGAA
ATTTATGAACTACAAGAGCTTCAACAAATAG

mRNA sequence

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Protein sequence

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MSLQATDPDTLLLQATDPTPTTPIPSHQSRCMRDSTVFGVNNLWLRLTMKMARCLYGLRSSLLYIEWWKLSAHLFFPIFQKALEQSLAESEPKEVVGFPVLLNQLICKFS
TSVHGILEDVFPTIASQIFNIIPRDSLPSGPEAILRKFMNYKSFNK

PI0025081 (gene) of Melon (PI 482460) v1 genome