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PI0025117 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0025117
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr10:2577878..2578474
RNA-Seq ExpressionPI0025117
SyntenyPI0025117
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032830.1 uncharacterized protein E6C27_scaffold708G00950 [Cucumis melo var. makuwa]9.8e-6666.5Show/hide
Query:  MSTKERHVSPEEQVIEGSVTRGRKEQHSPTRRSKSKGPAAIEYVDICFTNLEQGLEDVQFSVGRLSDNFDELVQENAKITTAAKELVEDLGRSFRKELNE
        MS KE H SP EQVIEG VTRGRKEQHSPTRRSKSKG A  E+VD   TNLEQG+EDVQ +VGRLSDNF+ELVQENA+IT+ AKE++ED+G++F+KEL E
Subjt:  MSTKERHVSPEEQVIEGSVTRGRKEQHSPTRRSKSKGPAAIEYVDICFTNLEQGLEDVQFSVGRLSDNFDELVQENAKITTAAKELVEDLGRSFRKELNE

Query:  L---VSTLKSLIEGELRELHTKYNTLDAKIDFVCSECRSKHVTDSSTSTGNQTAAQGTHAIKVPKPDIYNGVRNATIVENFLFGLERYFDALGVVDD
        L   V+TLK+ +EGEL +LHTK  + + ++D +C ECRSKH+  ++ ST       GT  IKVPKPD+YNGVRNAT+V+NFLFGLERYF ALGV DD
Subjt:  L---VSTLKSLIEGELRELHTKYNTLDAKIDFVCSECRSKHVTDSSTSTGNQTAAQGTHAIKVPKPDIYNGVRNATIVENFLFGLERYFDALGVVDD

KAA0040414.1 uncharacterized protein E6C27_scaffold35G00340 [Cucumis melo var. makuwa]9.8e-6665.99Show/hide
Query:  MSTKERHVSPEEQVIEGSVTRGRKEQHSPTRRSKSKGPAAIEYVDICFTNLEQGLEDVQFSVGRLSDNFDELVQENAKITTAAKELVEDLGRSFRKELNE
        MS +E H SP EQVIEG VTRGRKEQHSPTRRSKSKGPA  E+VD   TNLEQG+EDVQ +VGRLS+NF+ELVQENA+IT+ AKE++ED+GR+F++EL E
Subjt:  MSTKERHVSPEEQVIEGSVTRGRKEQHSPTRRSKSKGPAAIEYVDICFTNLEQGLEDVQFSVGRLSDNFDELVQENAKITTAAKELVEDLGRSFRKELNE

Query:  L---VSTLKSLIEGELRELHTKYNTLDAKIDFVCSECRSKHVTDSSTSTGNQTAAQGTHAIKVPKPDIYNGVRNATIVENFLFGLERYFDALGVVDD
        L   V+TLK+ +EGEL  LHTK  + + ++D +C ECRSKH+  ++ ST       GT  IKVPKPD+YNGVRNAT+V+NFLFGLERYF ALGV DD
Subjt:  L---VSTLKSLIEGELRELHTKYNTLDAKIDFVCSECRSKHVTDSSTSTGNQTAAQGTHAIKVPKPDIYNGVRNATIVENFLFGLERYFDALGVVDD

KAA0050866.1 uncharacterized protein E6C27_scaffold404G001380 [Cucumis melo var. makuwa]2.2e-6565.99Show/hide
Query:  MSTKERHVSPEEQVIEGSVTRGRKEQHSPTRRSKSKGPAAIEYVDICFTNLEQGLEDVQFSVGRLSDNFDELVQENAKITTAAKELVEDLGRSFRKELNE
        MS +E H SP EQVIEG+ TRGRKEQHS TRRSKSKGP A E+VD   TNLEQG+EDVQ + GRLSDNF+ELVQENA+IT+ AKE++ED+G++F+KEL E
Subjt:  MSTKERHVSPEEQVIEGSVTRGRKEQHSPTRRSKSKGPAAIEYVDICFTNLEQGLEDVQFSVGRLSDNFDELVQENAKITTAAKELVEDLGRSFRKELNE

Query:  L---VSTLKSLIEGELRELHTKYNTLDAKIDFVCSECRSKHVTDSSTSTGNQTAAQGTHAIKVPKPDIYNGVRNATIVENFLFGLERYFDALGVVDD
        L   V+TLK+ +EGEL +LHTK  +L+ ++D +C ECRSKH T  + ST       GT  IKVPKPD+YNGVRNAT+V+NFLFGLERYF ALGV DD
Subjt:  L---VSTLKSLIEGELRELHTKYNTLDAKIDFVCSECRSKHVTDSSTSTGNQTAAQGTHAIKVPKPDIYNGVRNATIVENFLFGLERYFDALGVVDD

KAA0065760.1 polyprotein [Cucumis melo var. makuwa]9.8e-6665.99Show/hide
Query:  MSTKERHVSPEEQVIEGSVTRGRKEQHSPTRRSKSKGPAAIEYVDICFTNLEQGLEDVQFSVGRLSDNFDELVQENAKITTAAKELVEDLGRSFRKELNE
        MS +E H SP EQVIEG VTRGRKEQHSPTRRSKSKGPA  E+VD   TNLEQG+EDVQ +VGRLS+NF+ELVQENA+IT+ AKE++ED+GR+F++EL E
Subjt:  MSTKERHVSPEEQVIEGSVTRGRKEQHSPTRRSKSKGPAAIEYVDICFTNLEQGLEDVQFSVGRLSDNFDELVQENAKITTAAKELVEDLGRSFRKELNE

Query:  L---VSTLKSLIEGELRELHTKYNTLDAKIDFVCSECRSKHVTDSSTSTGNQTAAQGTHAIKVPKPDIYNGVRNATIVENFLFGLERYFDALGVVDD
        L   V+TLK+ +EGEL  LHTK  + + ++D +C ECRSKH+  ++ ST       GT  IKVPKPD+YNGVRNAT+V+NFLFGLERYF ALGV DD
Subjt:  L---VSTLKSLIEGELRELHTKYNTLDAKIDFVCSECRSKHVTDSSTSTGNQTAAQGTHAIKVPKPDIYNGVRNATIVENFLFGLERYFDALGVVDD

TYK30387.1 uncharacterized protein E5676_scaffold575G00690 [Cucumis melo var. makuwa]9.8e-6666.5Show/hide
Query:  MSTKERHVSPEEQVIEGSVTRGRKEQHSPTRRSKSKGPAAIEYVDICFTNLEQGLEDVQFSVGRLSDNFDELVQENAKITTAAKELVEDLGRSFRKELNE
        MS KE H SP EQVIEG VTRGRKEQHSPTRRSKSKG A  E+VD   TNLEQG+EDVQ +VGRLSDNF+ELVQENA+IT+ AKE++ED+G++F+KEL E
Subjt:  MSTKERHVSPEEQVIEGSVTRGRKEQHSPTRRSKSKGPAAIEYVDICFTNLEQGLEDVQFSVGRLSDNFDELVQENAKITTAAKELVEDLGRSFRKELNE

Query:  L---VSTLKSLIEGELRELHTKYNTLDAKIDFVCSECRSKHVTDSSTSTGNQTAAQGTHAIKVPKPDIYNGVRNATIVENFLFGLERYFDALGVVDD
        L   V+TLK+ +EGEL +LHTK  + + ++D +C ECRSKH+  ++ ST       GT  IKVPKPD+YNGVRNAT+V+NFLFGLERYF ALGV DD
Subjt:  L---VSTLKSLIEGELRELHTKYNTLDAKIDFVCSECRSKHVTDSSTSTGNQTAAQGTHAIKVPKPDIYNGVRNATIVENFLFGLERYFDALGVVDD

TrEMBL top hitse value%identityAlignment
A0A5A7SPK5 Uncharacterized protein4.7e-6666.5Show/hide
Query:  MSTKERHVSPEEQVIEGSVTRGRKEQHSPTRRSKSKGPAAIEYVDICFTNLEQGLEDVQFSVGRLSDNFDELVQENAKITTAAKELVEDLGRSFRKELNE
        MS KE H SP EQVIEG VTRGRKEQHSPTRRSKSKG A  E+VD   TNLEQG+EDVQ +VGRLSDNF+ELVQENA+IT+ AKE++ED+G++F+KEL E
Subjt:  MSTKERHVSPEEQVIEGSVTRGRKEQHSPTRRSKSKGPAAIEYVDICFTNLEQGLEDVQFSVGRLSDNFDELVQENAKITTAAKELVEDLGRSFRKELNE

Query:  L---VSTLKSLIEGELRELHTKYNTLDAKIDFVCSECRSKHVTDSSTSTGNQTAAQGTHAIKVPKPDIYNGVRNATIVENFLFGLERYFDALGVVDD
        L   V+TLK+ +EGEL +LHTK  + + ++D +C ECRSKH+  ++ ST       GT  IKVPKPD+YNGVRNAT+V+NFLFGLERYF ALGV DD
Subjt:  L---VSTLKSLIEGELRELHTKYNTLDAKIDFVCSECRSKHVTDSSTSTGNQTAAQGTHAIKVPKPDIYNGVRNATIVENFLFGLERYFDALGVVDD

A0A5A7TAA5 Uncharacterized protein4.7e-6665.99Show/hide
Query:  MSTKERHVSPEEQVIEGSVTRGRKEQHSPTRRSKSKGPAAIEYVDICFTNLEQGLEDVQFSVGRLSDNFDELVQENAKITTAAKELVEDLGRSFRKELNE
        MS +E H SP EQVIEG VTRGRKEQHSPTRRSKSKGPA  E+VD   TNLEQG+EDVQ +VGRLS+NF+ELVQENA+IT+ AKE++ED+GR+F++EL E
Subjt:  MSTKERHVSPEEQVIEGSVTRGRKEQHSPTRRSKSKGPAAIEYVDICFTNLEQGLEDVQFSVGRLSDNFDELVQENAKITTAAKELVEDLGRSFRKELNE

Query:  L---VSTLKSLIEGELRELHTKYNTLDAKIDFVCSECRSKHVTDSSTSTGNQTAAQGTHAIKVPKPDIYNGVRNATIVENFLFGLERYFDALGVVDD
        L   V+TLK+ +EGEL  LHTK  + + ++D +C ECRSKH+  ++ ST       GT  IKVPKPD+YNGVRNAT+V+NFLFGLERYF ALGV DD
Subjt:  L---VSTLKSLIEGELRELHTKYNTLDAKIDFVCSECRSKHVTDSSTSTGNQTAAQGTHAIKVPKPDIYNGVRNATIVENFLFGLERYFDALGVVDD

A0A5A7THC0 Reverse transcriptase domain-containing protein1.1e-6565.99Show/hide
Query:  MSTKERHVSPEEQVIEGSVTRGRKEQHSPTRRSKSKGPAAIEYVDICFTNLEQGLEDVQFSVGRLSDNFDELVQENAKITTAAKELVEDLGRSFRKELNE
        MS +E H SP EQVIEG VTRGRKEQHSPTRRSKSKGPA  E+VD   TNLEQG+EDVQ +VGRLS+ F+ELVQENA+IT+ AKE++ED+GR+F+KEL E
Subjt:  MSTKERHVSPEEQVIEGSVTRGRKEQHSPTRRSKSKGPAAIEYVDICFTNLEQGLEDVQFSVGRLSDNFDELVQENAKITTAAKELVEDLGRSFRKELNE

Query:  L---VSTLKSLIEGELRELHTKYNTLDAKIDFVCSECRSKHVTDSSTSTGNQTAAQGTHAIKVPKPDIYNGVRNATIVENFLFGLERYFDALGVVDD
        L   V+TLK+ +EGEL +LHTK  + + ++D +C ECRSKH+  ++ ST       GT  IKVPKPD+YNGVRNAT+V+NFLFGLERYF ALGV DD
Subjt:  L---VSTLKSLIEGELRELHTKYNTLDAKIDFVCSECRSKHVTDSSTSTGNQTAAQGTHAIKVPKPDIYNGVRNATIVENFLFGLERYFDALGVVDD

A0A5A7VEX8 Polyprotein4.7e-6665.99Show/hide
Query:  MSTKERHVSPEEQVIEGSVTRGRKEQHSPTRRSKSKGPAAIEYVDICFTNLEQGLEDVQFSVGRLSDNFDELVQENAKITTAAKELVEDLGRSFRKELNE
        MS +E H SP EQVIEG VTRGRKEQHSPTRRSKSKGPA  E+VD   TNLEQG+EDVQ +VGRLS+NF+ELVQENA+IT+ AKE++ED+GR+F++EL E
Subjt:  MSTKERHVSPEEQVIEGSVTRGRKEQHSPTRRSKSKGPAAIEYVDICFTNLEQGLEDVQFSVGRLSDNFDELVQENAKITTAAKELVEDLGRSFRKELNE

Query:  L---VSTLKSLIEGELRELHTKYNTLDAKIDFVCSECRSKHVTDSSTSTGNQTAAQGTHAIKVPKPDIYNGVRNATIVENFLFGLERYFDALGVVDD
        L   V+TLK+ +EGEL  LHTK  + + ++D +C ECRSKH+  ++ ST       GT  IKVPKPD+YNGVRNAT+V+NFLFGLERYF ALGV DD
Subjt:  L---VSTLKSLIEGELRELHTKYNTLDAKIDFVCSECRSKHVTDSSTSTGNQTAAQGTHAIKVPKPDIYNGVRNATIVENFLFGLERYFDALGVVDD

A0A5D3E2T1 Uncharacterized protein4.7e-6666.5Show/hide
Query:  MSTKERHVSPEEQVIEGSVTRGRKEQHSPTRRSKSKGPAAIEYVDICFTNLEQGLEDVQFSVGRLSDNFDELVQENAKITTAAKELVEDLGRSFRKELNE
        MS KE H SP EQVIEG VTRGRKEQHSPTRRSKSKG A  E+VD   TNLEQG+EDVQ +VGRLSDNF+ELVQENA+IT+ AKE++ED+G++F+KEL E
Subjt:  MSTKERHVSPEEQVIEGSVTRGRKEQHSPTRRSKSKGPAAIEYVDICFTNLEQGLEDVQFSVGRLSDNFDELVQENAKITTAAKELVEDLGRSFRKELNE

Query:  L---VSTLKSLIEGELRELHTKYNTLDAKIDFVCSECRSKHVTDSSTSTGNQTAAQGTHAIKVPKPDIYNGVRNATIVENFLFGLERYFDALGVVDD
        L   V+TLK+ +EGEL +LHTK  + + ++D +C ECRSKH+  ++ ST       GT  IKVPKPD+YNGVRNAT+V+NFLFGLERYF ALGV DD
Subjt:  L---VSTLKSLIEGELRELHTKYNTLDAKIDFVCSECRSKHVTDSSTSTGNQTAAQGTHAIKVPKPDIYNGVRNATIVENFLFGLERYFDALGVVDD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCACCAAGGAAAGGCACGTATCACCCGAGGAGCAAGTCATTGAAGGATCCGTTACTCGGGGAAGGAAGGAACAACACTCTCCAACCCGACGCTCTAAGTCTAAGGG
ACCAGCGGCAATAGAGTACGTCGACATTTGCTTTACCAACCTAGAGCAAGGTCTGGAGGATGTTCAGTTCTCGGTTGGTAGGCTGAGTGATAACTTTGATGAGCTAGTCC
AGGAGAATGCCAAAATTACCACCGCGGCCAAGGAGCTCGTTGAGGATCTTGGACGATCGTTCAGAAAGGAACTAAACGAATTGGTATCGACATTAAAGTCCCTCATTGAA
GGTGAGTTACGTGAGCTCCATACTAAATACAACACTCTCGATGCCAAGATAGACTTTGTTTGTTCTGAGTGTCGTTCTAAACATGTCACCGACTCAAGCACTTCGACCGG
TAACCAAACCGCTGCGCAAGGCACCCATGCCATCAAAGTGCCCAAACCTGATATATACAATGGGGTGAGGAATGCCACAATCGTGGAGAATTTCCTCTTCGGCCTAGAGC
GATATTTTGATGCCCTAGGCGTGGTTGACGACAGAGGCTCGAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCCACCAAGGAAAGGCACGTATCACCCGAGGAGCAAGTCATTGAAGGATCCGTTACTCGGGGAAGGAAGGAACAACACTCTCCAACCCGACGCTCTAAGTCTAAGGG
ACCAGCGGCAATAGAGTACGTCGACATTTGCTTTACCAACCTAGAGCAAGGTCTGGAGGATGTTCAGTTCTCGGTTGGTAGGCTGAGTGATAACTTTGATGAGCTAGTCC
AGGAGAATGCCAAAATTACCACCGCGGCCAAGGAGCTCGTTGAGGATCTTGGACGATCGTTCAGAAAGGAACTAAACGAATTGGTATCGACATTAAAGTCCCTCATTGAA
GGTGAGTTACGTGAGCTCCATACTAAATACAACACTCTCGATGCCAAGATAGACTTTGTTTGTTCTGAGTGTCGTTCTAAACATGTCACCGACTCAAGCACTTCGACCGG
TAACCAAACCGCTGCGCAAGGCACCCATGCCATCAAAGTGCCCAAACCTGATATATACAATGGGGTGAGGAATGCCACAATCGTGGAGAATTTCCTCTTCGGCCTAGAGC
GATATTTTGATGCCCTAGGCGTGGTTGACGACAGAGGCTCGAATTAA
Protein sequenceShow/hide protein sequence
MSTKERHVSPEEQVIEGSVTRGRKEQHSPTRRSKSKGPAAIEYVDICFTNLEQGLEDVQFSVGRLSDNFDELVQENAKITTAAKELVEDLGRSFRKELNELVSTLKSLIE
GELRELHTKYNTLDAKIDFVCSECRSKHVTDSSTSTGNQTAAQGTHAIKVPKPDIYNGVRNATIVENFLFGLERYFDALGVVDDRGSN