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PI0025172 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0025172
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr06:21551629..21551826
RNA-Seq ExpressionPI0025172
SyntenyPI0025172
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033977.1 retrotransposon protein [Cucumis melo var. makuwa]1.0e-1163.08Show/hide
Query:  MADNMRENNSYRRRDELGTSDRSVMKLKGKMGDSETPMDNPTETIDRSKYKKLEMPLFLDNNPES
        MA++MRE+N++R +DE  TSD S +K KGKM D ET MDN   T DRSKYKKLEMP+F+  NPES
Subjt:  MADNMRENNSYRRRDELGTSDRSVMKLKGKMGDSETPMDNPTETIDRSKYKKLEMPLFLDNNPES
KAA0041225.1 uncharacterized protein E6C27_scaffold128G001860 [Cucumis melo var. makuwa]1.0e-1156.92Show/hide
Query:  MADNMRENNSYRRRDELGTSDRSVMKLKGKMGDSETPMDNPTETIDRSKYKKLEMPLFLDNNPES
        +AD +REN SY++++E GTSD S+MK+KGKM +++   +  T  +DRSKYKKLEMP+FL  NPES
Subjt:  MADNMRENNSYRRRDELGTSDRSVMKLKGKMGDSETPMDNPTETIDRSKYKKLEMPLFLDNNPES
KAA0062473.1 uncharacterized protein E6C27_scaffold130G00620 [Cucumis melo var. makuwa]1.7e-1157.81Show/hide
Query:  ADNMRENNSYRRRDELGTSDRSVMKLKGKMGDSETPMDNPTETIDRSKYKKLEMPLFLDNNPES
        AD +REN SY++++E GTSD S+MK+KGKM + +   +  T  +DRSKYKKLEMP+FL  NPES
Subjt:  ADNMRENNSYRRRDELGTSDRSVMKLKGKMGDSETPMDNPTETIDRSKYKKLEMPLFLDNNPES
KAA0065941.1 retrotransposon protein [Cucumis melo var. makuwa]1.0e-1160Show/hide
Query:  MADNMRENNSYRRRDELGTSDRSVMKLKGKMGDSETPMDNPTETIDRSKYKKLEMPLFLDNNPES
        +AD M+E+ SY++R+E GTS+ SVMKLKGKM ++E   +    +IDRSKYKKLEMP+FL  NPES
Subjt:  MADNMRENNSYRRRDELGTSDRSVMKLKGKMGDSETPMDNPTETIDRSKYKKLEMPLFLDNNPES
TYK16028.1 uncharacterized protein E5676_scaffold32G00230 [Cucumis melo var. makuwa]1.0e-1156.92Show/hide
Query:  MADNMRENNSYRRRDELGTSDRSVMKLKGKMGDSETPMDNPTETIDRSKYKKLEMPLFLDNNPES
        +AD +REN SY++++E GTSD S+MK+KGKM +++   +  T  +DRSKYKKLEMP+FL  NPES
Subjt:  MADNMRENNSYRRRDELGTSDRSVMKLKGKMGDSETPMDNPTETIDRSKYKKLEMPLFLDNNPES
TrEMBL top hitse value%identityAlignment
A0A5A7TII1 Uncharacterized protein4.9e-1256.92Show/hide
Query:  MADNMRENNSYRRRDELGTSDRSVMKLKGKMGDSETPMDNPTETIDRSKYKKLEMPLFLDNNPES
        +AD +REN SY++++E GTSD S+MK+KGKM +++   +  T  +DRSKYKKLEMP+FL  NPES
Subjt:  MADNMRENNSYRRRDELGTSDRSVMKLKGKMGDSETPMDNPTETIDRSKYKKLEMPLFLDNNPES
A0A5D3BWR3 Retrotransposon protein4.9e-1263.08Show/hide
Query:  MADNMRENNSYRRRDELGTSDRSVMKLKGKMGDSETPMDNPTETIDRSKYKKLEMPLFLDNNPES
        MA++MRE+N++R +DE  TSD S +K KGKM D ET MDN   T DRSKYKKLEMP+F+  NPES
Subjt:  MADNMRENNSYRRRDELGTSDRSVMKLKGKMGDSETPMDNPTETIDRSKYKKLEMPLFLDNNPES
A0A5D3CXP0 Uncharacterized protein4.9e-1256.92Show/hide
Query:  MADNMRENNSYRRRDELGTSDRSVMKLKGKMGDSETPMDNPTETIDRSKYKKLEMPLFLDNNPES
        +AD +REN SY++++E GTSD S+MK+KGKM +++   +  T  +DRSKYKKLEMP+FL  NPES
Subjt:  MADNMRENNSYRRRDELGTSDRSVMKLKGKMGDSETPMDNPTETIDRSKYKKLEMPLFLDNNPES
A0A5D3DVI3 Uncharacterized protein8.4e-1257.81Show/hide
Query:  ADNMRENNSYRRRDELGTSDRSVMKLKGKMGDSETPMDNPTETIDRSKYKKLEMPLFLDNNPES
        AD +REN SY++++E GTSD S+MK+KGKM + +   +  T  +DRSKYKKLEMP+FL  NPES
Subjt:  ADNMRENNSYRRRDELGTSDRSVMKLKGKMGDSETPMDNPTETIDRSKYKKLEMPLFLDNNPES
A0A5D3E4T6 Retrotransposon protein4.9e-1260Show/hide
Query:  MADNMRENNSYRRRDELGTSDRSVMKLKGKMGDSETPMDNPTETIDRSKYKKLEMPLFLDNNPES
        +AD M+E+ SY++R+E GTS+ SVMKLKGKM ++E   +    +IDRSKYKKLEMP+FL  NPES
Subjt:  MADNMRENNSYRRRDELGTSDRSVMKLKGKMGDSETPMDNPTETIDRSKYKKLEMPLFLDNNPES
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGATAACATGAGAGAAAACAACTCATATCGAAGGAGAGACGAGTTAGGGACCTCCGACAGATCAGTGATGAAACTCAAAGGGAAAATGGGTGATTCAGAAACACC
TATGGACAACCCGACGGAAACTATCGATAGAAGTAAGTATAAAAAGCTCGAGATGCCTCTATTCCTCGATAACAACCCAGAATCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGATAACATGAGAGAAAACAACTCATATCGAAGGAGAGACGAGTTAGGGACCTCCGACAGATCAGTGATGAAACTCAAAGGGAAAATGGGTGATTCAGAAACACC
TATGGACAACCCGACGGAAACTATCGATAGAAGTAAGTATAAAAAGCTCGAGATGCCTCTATTCCTCGATAACAACCCAGAATCTTGA
Protein sequenceShow/hide protein sequence
MADNMRENNSYRRRDELGTSDRSVMKLKGKMGDSETPMDNPTETIDRSKYKKLEMPLFLDNNPES