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PI0025217 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0025217
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr07:15905826..15907595
RNA-Seq ExpressionPI0025217
SyntenyPI0025217
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037432.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.7e-5879.35Show/hide
Query:  MTSRGNTSKALSDIDKRPNTRSRSREAQSSEDMPPFEVAKNIWEKLSKPPKGGIIIKESHVIDEHGLSSECSSEEMPHPNIMSVMVTNVDTSEDRMAELE
        MTS+GNTSKALSDI KRPNTRSRSRE QSSEDMPPFEVAKNIWE++SKPPKGGI+IKE+H IDEH  SS+ SSEEMPHPNI+SVMVTNVDTSE+RMAELE
Subjt:  MTSRGNTSKALSDIDKRPNTRSRSREAQSSEDMPPFEVAKNIWEKLSKPPKGGIIIKESHVIDEHGLSSECSSEEMPHPNIMSVMVTNVDTSEDRMAELE

Query:  KKVNMLLKAVEERDYEIESLRNHIESRDAAELSQTYTTKNKDKGKAILQEKDEKH
        KKVNML+K VEERDYEI  L+NHIESRDAAE S  +T KN DKGKA++QE   ++
Subjt:  KKVNMLLKAVEERDYEIESLRNHIESRDAAELSQTYTTKNKDKGKAILQEKDEKH
KAA0039098.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.5e-5979.49Show/hide
Query:  MTSRGNTSKALSDIDKRPNTRSRSREAQSSEDMPPFEVAKNIWEKLSKPPKGGIIIKESHVIDEHGLSSECSSEEMPHPNIMSVMVTNVDTSEDRMAELE
        MTS+GNTSKALSDI KRPNTRSRSRE QSSEDMPPFEVAKNIWE++SKPPKGGI+IKE+H IDEH  SS+ SSEEMPHPNIMSVMVTNVDTSE+RMAELE
Subjt:  MTSRGNTSKALSDIDKRPNTRSRSREAQSSEDMPPFEVAKNIWEKLSKPPKGGIIIKESHVIDEHGLSSECSSEEMPHPNIMSVMVTNVDTSEDRMAELE

Query:  KKVNMLLKAVEERDYEIESLRNHIESRDAAELSQTYTTKNKDKGKAILQEKDEKHV
        KKVNML+K VEERDYEI  L+NHIESRDAAE S  +T KN DKGKA++QE   +++
Subjt:  KKVNMLLKAVEERDYEIESLRNHIESRDAAELSQTYTTKNKDKGKAILQEKDEKHV
KAA0056121.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.0e-5980.65Show/hide
Query:  MTSRGNTSKALSDIDKRPNTRSRSREAQSSEDMPPFEVAKNIWEKLSKPPKGGIIIKESHVIDEHGLSSECSSEEMPHPNIMSVMVTNVDTSEDRMAELE
        MTS+GNTSKALSDI KRPNTRSRSRE QSSEDMPPFEVAKNIWEK+SKPPKGGI+IKE+H IDEH  SS+ SSEEMPHPNIMSVMVTNVDTSE+RMAELE
Subjt:  MTSRGNTSKALSDIDKRPNTRSRSREAQSSEDMPPFEVAKNIWEKLSKPPKGGIIIKESHVIDEHGLSSECSSEEMPHPNIMSVMVTNVDTSEDRMAELE

Query:  KKVNMLLKAVEERDYEIESLRNHIESRDAAELSQTYTTKNKDKGKAILQEKDEKH
        KKVNML+K VEERDYEI  L+NHIESRDAAE S  +T KN DKGKA++QE   ++
Subjt:  KKVNMLLKAVEERDYEIESLRNHIESRDAAELSQTYTTKNKDKGKAILQEKDEKH
KAA0065303.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.3e-5879.35Show/hide
Query:  MTSRGNTSKALSDIDKRPNTRSRSREAQSSEDMPPFEVAKNIWEKLSKPPKGGIIIKESHVIDEHGLSSECSSEEMPHPNIMSVMVTNVDTSEDRMAELE
        MTS+GNTSKALSDI KRPNTRSRSRE QSSEDMPPFEVAKNIWE++SKPPKGGI+IKE+H IDEH  SS+ SSEEMPHPNIMSVMV NVDTSE+RMAELE
Subjt:  MTSRGNTSKALSDIDKRPNTRSRSREAQSSEDMPPFEVAKNIWEKLSKPPKGGIIIKESHVIDEHGLSSECSSEEMPHPNIMSVMVTNVDTSEDRMAELE

Query:  KKVNMLLKAVEERDYEIESLRNHIESRDAAELSQTYTTKNKDKGKAILQEKDEKH
        KKVNML+K VEERDYEI  L+NHIESRDAAE S  +T KN DKGKA++QE   ++
Subjt:  KKVNMLLKAVEERDYEIESLRNHIESRDAAELSQTYTTKNKDKGKAILQEKDEKH
TYK14887.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.5e-5979.49Show/hide
Query:  MTSRGNTSKALSDIDKRPNTRSRSREAQSSEDMPPFEVAKNIWEKLSKPPKGGIIIKESHVIDEHGLSSECSSEEMPHPNIMSVMVTNVDTSEDRMAELE
        MTS+GNTSKALSDI KRPNTRSRSRE QSSEDMPPFEVAKNIWE++SKPPKGGI+IKE+H IDEH  SS+ SSEEMPHPNIMSVMVTNVDTSE+RMAELE
Subjt:  MTSRGNTSKALSDIDKRPNTRSRSREAQSSEDMPPFEVAKNIWEKLSKPPKGGIIIKESHVIDEHGLSSECSSEEMPHPNIMSVMVTNVDTSEDRMAELE

Query:  KKVNMLLKAVEERDYEIESLRNHIESRDAAELSQTYTTKNKDKGKAILQEKDEKHV
        KKVNML+K VEERDYEI  L+NHIESRDAAE S  +T KN DKGKA++QE   +++
Subjt:  KKVNMLLKAVEERDYEIESLRNHIESRDAAELSQTYTTKNKDKGKAILQEKDEKHV
TrEMBL top hitse value%identityAlignment
A0A5A7T1V3 Ty3-gypsy retrotransposon protein8.3e-5979.35Show/hide
Query:  MTSRGNTSKALSDIDKRPNTRSRSREAQSSEDMPPFEVAKNIWEKLSKPPKGGIIIKESHVIDEHGLSSECSSEEMPHPNIMSVMVTNVDTSEDRMAELE
        MTS+GNTSKALSDI KRPNTRSRSRE QSSEDMPPFEVAKNIWE++SKPPKGGI+IKE+H IDEH  SS+ SSEEMPHPNI+SVMVTNVDTSE+RMAELE
Subjt:  MTSRGNTSKALSDIDKRPNTRSRSREAQSSEDMPPFEVAKNIWEKLSKPPKGGIIIKESHVIDEHGLSSECSSEEMPHPNIMSVMVTNVDTSEDRMAELE

Query:  KKVNMLLKAVEERDYEIESLRNHIESRDAAELSQTYTTKNKDKGKAILQEKDEKH
        KKVNML+K VEERDYEI  L+NHIESRDAAE S  +T KN DKGKA++QE   ++
Subjt:  KKVNMLLKAVEERDYEIESLRNHIESRDAAELSQTYTTKNKDKGKAILQEKDEKH
A0A5A7T892 Ty3-gypsy retrotransposon protein1.7e-5979.49Show/hide
Query:  MTSRGNTSKALSDIDKRPNTRSRSREAQSSEDMPPFEVAKNIWEKLSKPPKGGIIIKESHVIDEHGLSSECSSEEMPHPNIMSVMVTNVDTSEDRMAELE
        MTS+GNTSKALSDI KRPNTRSRSRE QSSEDMPPFEVAKNIWE++SKPPKGGI+IKE+H IDEH  SS+ SSEEMPHPNIMSVMVTNVDTSE+RMAELE
Subjt:  MTSRGNTSKALSDIDKRPNTRSRSREAQSSEDMPPFEVAKNIWEKLSKPPKGGIIIKESHVIDEHGLSSECSSEEMPHPNIMSVMVTNVDTSEDRMAELE

Query:  KKVNMLLKAVEERDYEIESLRNHIESRDAAELSQTYTTKNKDKGKAILQEKDEKHV
        KKVNML+K VEERDYEI  L+NHIESRDAAE S  +T KN DKGKA++QE   +++
Subjt:  KKVNMLLKAVEERDYEIESLRNHIESRDAAELSQTYTTKNKDKGKAILQEKDEKHV
A0A5A7URH1 Ty3-gypsy retrotransposon protein9.9e-6080.65Show/hide
Query:  MTSRGNTSKALSDIDKRPNTRSRSREAQSSEDMPPFEVAKNIWEKLSKPPKGGIIIKESHVIDEHGLSSECSSEEMPHPNIMSVMVTNVDTSEDRMAELE
        MTS+GNTSKALSDI KRPNTRSRSRE QSSEDMPPFEVAKNIWEK+SKPPKGGI+IKE+H IDEH  SS+ SSEEMPHPNIMSVMVTNVDTSE+RMAELE
Subjt:  MTSRGNTSKALSDIDKRPNTRSRSREAQSSEDMPPFEVAKNIWEKLSKPPKGGIIIKESHVIDEHGLSSECSSEEMPHPNIMSVMVTNVDTSEDRMAELE

Query:  KKVNMLLKAVEERDYEIESLRNHIESRDAAELSQTYTTKNKDKGKAILQEKDEKH
        KKVNML+K VEERDYEI  L+NHIESRDAAE S  +T KN DKGKA++QE   ++
Subjt:  KKVNMLLKAVEERDYEIESLRNHIESRDAAELSQTYTTKNKDKGKAILQEKDEKH
A0A5A7VAV4 Retrotransposon gag protein1.1e-5879.35Show/hide
Query:  MTSRGNTSKALSDIDKRPNTRSRSREAQSSEDMPPFEVAKNIWEKLSKPPKGGIIIKESHVIDEHGLSSECSSEEMPHPNIMSVMVTNVDTSEDRMAELE
        MTS+GNTSKALSDI KRPNTRSRSRE QSSEDMPPFEVAKNIWE++SKPPKGGI+IKE+H IDEH  SS+ SSEEMPHPNIMSVMV NVDTSE+RMAELE
Subjt:  MTSRGNTSKALSDIDKRPNTRSRSREAQSSEDMPPFEVAKNIWEKLSKPPKGGIIIKESHVIDEHGLSSECSSEEMPHPNIMSVMVTNVDTSEDRMAELE

Query:  KKVNMLLKAVEERDYEIESLRNHIESRDAAELSQTYTTKNKDKGKAILQEKDEKH
        KKVNML+K VEERDYEI  L+NHIESRDAAE S  +T KN DKGKA++QE   ++
Subjt:  KKVNMLLKAVEERDYEIESLRNHIESRDAAELSQTYTTKNKDKGKAILQEKDEKH
A0A5D3CSH0 Ty3-gypsy retrotransposon protein1.7e-5979.49Show/hide
Query:  MTSRGNTSKALSDIDKRPNTRSRSREAQSSEDMPPFEVAKNIWEKLSKPPKGGIIIKESHVIDEHGLSSECSSEEMPHPNIMSVMVTNVDTSEDRMAELE
        MTS+GNTSKALSDI KRPNTRSRSRE QSSEDMPPFEVAKNIWE++SKPPKGGI+IKE+H IDEH  SS+ SSEEMPHPNIMSVMVTNVDTSE+RMAELE
Subjt:  MTSRGNTSKALSDIDKRPNTRSRSREAQSSEDMPPFEVAKNIWEKLSKPPKGGIIIKESHVIDEHGLSSECSSEEMPHPNIMSVMVTNVDTSEDRMAELE

Query:  KKVNMLLKAVEERDYEIESLRNHIESRDAAELSQTYTTKNKDKGKAILQEKDEKHV
        KKVNML+K VEERDYEI  L+NHIESRDAAE S  +T KN DKGKA++QE   +++
Subjt:  KKVNMLLKAVEERDYEIESLRNHIESRDAAELSQTYTTKNKDKGKAILQEKDEKHV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGTCCAGAGGCAACACTTCCAAAGCTCTAAGCGACATCGATAAAAGGCCAAATACCCGCAGCCGTTCAAGGGAGGCCCAATCGTCTGAGGATATGCCACCCTTTGA
GGTCGCAAAGAATATCTGGGAAAAGTTGTCAAAACCACCAAAAGGTGGAATTATAATAAAGGAAAGTCATGTGATTGATGAACACGGTTTGTCCTCTGAATGCTCAAGTG
AGGAGATGCCTCACCCAAATATAATGTCAGTTATGGTGACTAACGTTGATACAAGTGAGGATAGAATGGCGGAGCTTGAAAAGAAGGTTAACATGCTCCTGAAGGCAGTT
GAAGAAAGGGATTATGAGATTGAATCCCTAAGAAATCACATTGAAAGTCGTGACGCTGCTGAATTAAGTCAGACATATACCACCAAGAATAAGGACAAAGGGAAGGCAAT
TTTGCAGGAAAAAGACGAAAAACACGTGGAAGATGCTGACGAGGGATGGACGCTAGTAACGCGTCGAAAGAAGCACAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGACGTCCAGAGGCAACACTTCCAAAGCTCTAAGCGACATCGATAAAAGGCCAAATACCCGCAGCCGTTCAAGGGAGGCCCAATCGTCTGAGGATATGCCACCCTTTGA
GGTCGCAAAGAATATCTGGGAAAAGTTGTCAAAACCACCAAAAGGTGGAATTATAATAAAGGAAAGTCATGTGATTGATGAACACGGTTTGTCCTCTGAATGCTCAAGTG
AGGAGATGCCTCACCCAAATATAATGTCAGTTATGGTGACTAACGTTGATACAAGTGAGGATAGAATGGCGGAGCTTGAAAAGAAGGTTAACATGCTCCTGAAGGCAGTT
GAAGAAAGGGATTATGAGATTGAATCCCTAAGAAATCACATTGAAAGTCGTGACGCTGCTGAATTAAGTCAGACATATACCACCAAGAATAAGGACAAAGGGAAGGCAAT
TTTGCAGGAAAAAGACGAAAAACACGTGGAAGATGCTGACGAGGGATGGACGCTAGTAACGCGTCGAAAGAAGCACAAATAA
Protein sequenceShow/hide protein sequence
MTSRGNTSKALSDIDKRPNTRSRSREAQSSEDMPPFEVAKNIWEKLSKPPKGGIIIKESHVIDEHGLSSECSSEEMPHPNIMSVMVTNVDTSEDRMAELEKKVNMLLKAV
EERDYEIESLRNHIESRDAAELSQTYTTKNKDKGKAILQEKDEKHVEDADEGWTLVTRRKKHK