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PI0025233 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0025233
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase
Genome locationchr09:6284307..6284498
RNA-Seq ExpressionPI0025233
SyntenyPI0025233
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0016020 - membrane (cellular component)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0005525 - GTP binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050086.1 reverse transcriptase [Cucumis melo var. makuwa]5.0e-0858.73Show/hide
Query:  MTDTINSHIDIKMSENDKSETIIPGNIGEHDNVETGVISDREGSDGGTKVIAKVTENNTREDR
        MTD+I+SHID KMSE++KSETIIP NI E  NV T VI + +GS+   +V A+V +N  REDR
Subjt:  MTDTINSHIDIKMSENDKSETIIPGNIGEHDNVETGVISDREGSDGGTKVIAKVTENNTREDR

KAA0050862.1 reverse transcriptase [Cucumis melo var. makuwa]1.4e-0566.04Show/hide
Query:  IKMSENDKSETIIPGNIGEHDNVETGVISDREGSDGGTKVIAKVTENNTREDR
        IKMSE+DKSET I        +V+T VISD +GSDGG +VIAKVTEN TREDR
Subjt:  IKMSENDKSETIIPGNIGEHDNVETGVISDREGSDGGTKVIAKVTENNTREDR

KAA0065411.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.7e-1168.25Show/hide
Query:  MTDTINSHIDIKMSENDKSETIIPGNIGEHDNVETGVISDREGSDGGTKVIAKVTENNTREDR
        MTDTI+SHID K SE+D+SET  P NI    +V+TG + DREGSDGG KVI KVTENN REDR
Subjt:  MTDTINSHIDIKMSENDKSETIIPGNIGEHDNVETGVISDREGSDGGTKVIAKVTENNTREDR

KAA0067418.1 tRNA modification GTPase MnmE [Cucumis melo var. makuwa]1.5e-1575.81Show/hide
Query:  MTDTINSHIDIKMSENDKSETIIPGNIGEHDNVETGVISDREGSDGGTKVIAKVTENNTRED
        +TDTI+SHID KMSE+DK ET IP NIGEH NV+TGV+S+REGSDGG +VIAKVTENN RE+
Subjt:  MTDTINSHIDIKMSENDKSETIIPGNIGEHDNVETGVISDREGSDGGTKVIAKVTENNTRED

TYK06339.1 reverse transcriptase [Cucumis melo var. makuwa]3.5e-0961.9Show/hide
Query:  MTDTINSHIDIKMSENDKSETIIPGNIGEHDNVETGVISDREGSDGGTKVIAKVTENNTREDR
        MTD+I+SHID KM+E+DKSETIIP NI E  NV T VI D +GS+   KV A+V +N  REDR
Subjt:  MTDTINSHIDIKMSENDKSETIIPGNIGEHDNVETGVISDREGSDGGTKVIAKVTENNTREDR

TrEMBL top hitse value%identityAlignment
A0A5A7U7D6 Reverse transcriptase2.4e-0858.73Show/hide
Query:  MTDTINSHIDIKMSENDKSETIIPGNIGEHDNVETGVISDREGSDGGTKVIAKVTENNTREDR
        MTD+I+SHID KMSE++KSETIIP NI E  NV T VI + +GS+   +V A+V +N  REDR
Subjt:  MTDTINSHIDIKMSENDKSETIIPGNIGEHDNVETGVISDREGSDGGTKVIAKVTENNTREDR

A0A5A7VI50 Retrovirus-related Pol polyprotein from transposon TNT 1-948.1e-1268.25Show/hide
Query:  MTDTINSHIDIKMSENDKSETIIPGNIGEHDNVETGVISDREGSDGGTKVIAKVTENNTREDR
        MTDTI+SHID K SE+D+SET  P NI    +V+TG + DREGSDGG KVI KVTENN REDR
Subjt:  MTDTINSHIDIKMSENDKSETIIPGNIGEHDNVETGVISDREGSDGGTKVIAKVTENNTREDR

A0A5A7VI58 tRNA modification GTPase MnmE7.1e-1675.81Show/hide
Query:  MTDTINSHIDIKMSENDKSETIIPGNIGEHDNVETGVISDREGSDGGTKVIAKVTENNTRED
        +TDTI+SHID KMSE+DK ET IP NIGEH NV+TGV+S+REGSDGG +VIAKVTENN RE+
Subjt:  MTDTINSHIDIKMSENDKSETIIPGNIGEHDNVETGVISDREGSDGGTKVIAKVTENNTRED

A0A5D3C7K7 Reverse transcriptase1.7e-0961.9Show/hide
Query:  MTDTINSHIDIKMSENDKSETIIPGNIGEHDNVETGVISDREGSDGGTKVIAKVTENNTREDR
        MTD+I+SHID KM+E+DKSETIIP NI E  NV T VI D +GS+   KV A+V +N  REDR
Subjt:  MTDTINSHIDIKMSENDKSETIIPGNIGEHDNVETGVISDREGSDGGTKVIAKVTENNTREDR

A0A5D3CAX0 Reverse transcriptase6.7e-0666.04Show/hide
Query:  IKMSENDKSETIIPGNIGEHDNVETGVISDREGSDGGTKVIAKVTENNTREDR
        IKMSE+DKSET I        +V+T VISD +GSDGG +VIAKVTEN TREDR
Subjt:  IKMSENDKSETIIPGNIGEHDNVETGVISDREGSDGGTKVIAKVTENNTREDR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGATACTATTAACTCACATATTGACATCAAAATGAGTGAAAATGACAAGTCTGAGACAATTATCCCTGGGAACATAGGTGAACATGACAATGTTGAAACTGGGGT
CATTTCAGATAGAGAGGGCAGTGATGGTGGGACTAAAGTTATTGCAAAAGTTACTGAGAATAACACAAGGGAGGATCGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGACTGATACTATTAACTCACATATTGACATCAAAATGAGTGAAAATGACAAGTCTGAGACAATTATCCCTGGGAACATAGGTGAACATGACAATGTTGAAACTGGGGT
CATTTCAGATAGAGAGGGCAGTGATGGTGGGACTAAAGTTATTGCAAAAGTTACTGAGAATAACACAAGGGAGGATCGTTAA
Protein sequenceShow/hide protein sequence
MTDTINSHIDIKMSENDKSETIIPGNIGEHDNVETGVISDREGSDGGTKVIAKVTENNTREDR