CuGenDBv2

Gene ID	PI0025241
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Reverse transcriptase domain-containing protein
Genome location	chr07:9271173..9271772
RNA-Seq Expression	PI0025241
Synteny	PI0025241
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0026071.1 uncharacterized protein E6C27_scaffold581G00620 [Cucumis melo var. makuwa]

1.0e-62

72.35

Show/hide

Query:  GSLSGLIAKLEKSSMFVAGVDIEAATVLADSMGFALGTLPVRYLGVPLISGRLHSSDCAPLIQRITSWIWSWSARVLSFAGRLQLMCSVLRSFQVFWASV
        G LSGL A   KSS+FVAGV+ E A+ LA  MGFA G LPVRYLG+PL++GRL S+DCAPLIQRITS I SW+ARVLSFAGRLQL+ SVLRS QV+WASV
Subjt:  GSLSGLIAKLEKSSMFVAGVDIEAATVLADSMGFALGTLPVRYLGVPLISGRLHSSDCAPLIQRITSWIWSWSARVLSFAGRLQLMCSVLRSFQVFWASV

Query:  FVLPVEVHHEVDRLLRSYLWRGKEDGRGGMKVAWVDVCRPFEERGLNIREGKSWNSSRILKVLWLMLTSA
        FVLP  VH+EVD++LRSYLWRGKE+GRGG+KVAWVDVC PFEE G  IR+G SWN +  LK+LWLMLT++
Subjt:  FVLPVEVHHEVDRLLRSYLWRGKEDGRGGMKVAWVDVCRPFEERGLNIREGKSWNSSRILKVLWLMLTSA

KAA0046247.1 uncharacterized protein E6C27_scaffold284G00450 [Cucumis melo var. makuwa]

1.7e-62

71.76

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Query:  GSLSGLIAKLEKSSMFVAGVDIEAATVLADSMGFALGTLPVRYLGVPLISGRLHSSDCAPLIQRITSWIWSWSARVLSFAGRLQLMCSVLRSFQVFWASV
        G LSGL A   KSS+FVAGV+ E A+ LA  MGF  G L VRYLG+PL++GRL S+DCAPLIQRITS I SW+ARVLSFAGR+QL+CSVLRS QV+WASV
Subjt:  GSLSGLIAKLEKSSMFVAGVDIEAATVLADSMGFALGTLPVRYLGVPLISGRLHSSDCAPLIQRITSWIWSWSARVLSFAGRLQLMCSVLRSFQVFWASV

Query:  FVLPVEVHHEVDRLLRSYLWRGKEDGRGGMKVAWVDVCRPFEERGLNIREGKSWNSSRILKVLWLMLTSA
        FVLP  VH+EVD++LRSYLWRGKE+GRGG+KVAWVDVC PFEE GL IR+G SWN +  LK+LWLMLT++
Subjt:  FVLPVEVHHEVDRLLRSYLWRGKEDGRGGMKVAWVDVCRPFEERGLNIREGKSWNSSRILKVLWLMLTSA

KAA0062333.1 putative reverse transcriptase [Cucumis melo var. makuwa]

5.0e-62

72.35

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Query:  GSLSGLIAKLEKSSMFVAGVDIEAATVLADSMGFALGTLPVRYLGVPLISGRLHSSDCAPLIQRITSWIWSWSARVLSFAGRLQLMCSVLRSFQVFWASV
        G LSGL   L K+SMFVAGV+ E A+ LA SMGF LG LPVRYLG+PL+SGRL SSDCAPLIQRITS I SW ARV SFAGRLQL+  VLRS QVFWASV
Subjt:  GSLSGLIAKLEKSSMFVAGVDIEAATVLADSMGFALGTLPVRYLGVPLISGRLHSSDCAPLIQRITSWIWSWSARVLSFAGRLQLMCSVLRSFQVFWASV

Query:  FVLPVEVHHEVDRLLRSYLWRGKEDGRGGMKVAWVDVCRPFEERGLNIREGKSWNSSRILKVLWLMLTSA
        FVLP  VH++VD++LRSYLWR KE+GRGG+KVAWV+VC PFEE GL IR+G SWN +  LK+LWLMLT++
Subjt:  FVLPVEVHHEVDRLLRSYLWRGKEDGRGGMKVAWVDVCRPFEERGLNIREGKSWNSSRILKVLWLMLTSA

TYK18951.1 uncharacterized protein E5676_scaffold418G00380 [Cucumis melo var. makuwa]

1.7e-62

71.76

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Query:  GSLSGLIAKLEKSSMFVAGVDIEAATVLADSMGFALGTLPVRYLGVPLISGRLHSSDCAPLIQRITSWIWSWSARVLSFAGRLQLMCSVLRSFQVFWASV
        G LSGL A   KSS+FVAGV+ E A+ LA  MGF  G L VRYLG+PL++GRL S+DCAPLIQRITS I SW+ARVLSFAGR+QL+CSVLRS QV+WASV
Subjt:  GSLSGLIAKLEKSSMFVAGVDIEAATVLADSMGFALGTLPVRYLGVPLISGRLHSSDCAPLIQRITSWIWSWSARVLSFAGRLQLMCSVLRSFQVFWASV

Query:  FVLPVEVHHEVDRLLRSYLWRGKEDGRGGMKVAWVDVCRPFEERGLNIREGKSWNSSRILKVLWLMLTSA
        FVLP  VH+EVD++LRSYLWRGKE+GRGG+KVAWVDVC PFEE GL IR+G SWN +  LK+LWLMLT++
Subjt:  FVLPVEVHHEVDRLLRSYLWRGKEDGRGGMKVAWVDVCRPFEERGLNIREGKSWNSSRILKVLWLMLTSA

TYK28099.1 uncharacterized protein E5676_scaffold1467G00020 [Cucumis melo var. makuwa]

1.0e-62

72.35

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Query:  GSLSGLIAKLEKSSMFVAGVDIEAATVLADSMGFALGTLPVRYLGVPLISGRLHSSDCAPLIQRITSWIWSWSARVLSFAGRLQLMCSVLRSFQVFWASV
        G LSGL A   KSS+FVAGV+ E A+ LA  MGFA G LPVRYLG+PL++GRL S+DCAPLIQRITS I SW+ARVLSFAGRLQL+ SVLRS QV+WASV
Subjt:  GSLSGLIAKLEKSSMFVAGVDIEAATVLADSMGFALGTLPVRYLGVPLISGRLHSSDCAPLIQRITSWIWSWSARVLSFAGRLQLMCSVLRSFQVFWASV

Query:  FVLPVEVHHEVDRLLRSYLWRGKEDGRGGMKVAWVDVCRPFEERGLNIREGKSWNSSRILKVLWLMLTSA
        FVLP  VH+EVD++LRSYLWRGKE+GRGG+KVAWVDVC PFEE G  IR+G SWN +  LK+LWLMLT++
Subjt:  FVLPVEVHHEVDRLLRSYLWRGKEDGRGGMKVAWVDVCRPFEERGLNIREGKSWNSSRILKVLWLMLTSA

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SPE5 Reverse transcriptase domain-containing protein

4.9e-63

72.35

Show/hide

Query:  GSLSGLIAKLEKSSMFVAGVDIEAATVLADSMGFALGTLPVRYLGVPLISGRLHSSDCAPLIQRITSWIWSWSARVLSFAGRLQLMCSVLRSFQVFWASV
        G LSGL A   KSS+FVAGV+ E A+ LA  MGFA G LPVRYLG+PL++GRL S+DCAPLIQRITS I SW+ARVLSFAGRLQL+ SVLRS QV+WASV
Subjt:  GSLSGLIAKLEKSSMFVAGVDIEAATVLADSMGFALGTLPVRYLGVPLISGRLHSSDCAPLIQRITSWIWSWSARVLSFAGRLQLMCSVLRSFQVFWASV

Query:  FVLPVEVHHEVDRLLRSYLWRGKEDGRGGMKVAWVDVCRPFEERGLNIREGKSWNSSRILKVLWLMLTSA
        FVLP  VH+EVD++LRSYLWRGKE+GRGG+KVAWVDVC PFEE G  IR+G SWN +  LK+LWLMLT++
Subjt:  FVLPVEVHHEVDRLLRSYLWRGKEDGRGGMKVAWVDVCRPFEERGLNIREGKSWNSSRILKVLWLMLTSA

A0A5A7TWG5 Reverse transcriptase domain-containing protein

8.4e-63

71.76

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Query:  GSLSGLIAKLEKSSMFVAGVDIEAATVLADSMGFALGTLPVRYLGVPLISGRLHSSDCAPLIQRITSWIWSWSARVLSFAGRLQLMCSVLRSFQVFWASV
        G LSGL A   KSS+FVAGV+ E A+ LA  MGF  G L VRYLG+PL++GRL S+DCAPLIQRITS I SW+ARVLSFAGR+QL+CSVLRS QV+WASV
Subjt:  GSLSGLIAKLEKSSMFVAGVDIEAATVLADSMGFALGTLPVRYLGVPLISGRLHSSDCAPLIQRITSWIWSWSARVLSFAGRLQLMCSVLRSFQVFWASV

Query:  FVLPVEVHHEVDRLLRSYLWRGKEDGRGGMKVAWVDVCRPFEERGLNIREGKSWNSSRILKVLWLMLTSA
        FVLP  VH+EVD++LRSYLWRGKE+GRGG+KVAWVDVC PFEE GL IR+G SWN +  LK+LWLMLT++
Subjt:  FVLPVEVHHEVDRLLRSYLWRGKEDGRGGMKVAWVDVCRPFEERGLNIREGKSWNSSRILKVLWLMLTSA

A0A5A7V2L9 Putative reverse transcriptase

2.4e-62

72.35

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Query:  GSLSGLIAKLEKSSMFVAGVDIEAATVLADSMGFALGTLPVRYLGVPLISGRLHSSDCAPLIQRITSWIWSWSARVLSFAGRLQLMCSVLRSFQVFWASV
        G LSGL   L K+SMFVAGV+ E A+ LA SMGF LG LPVRYLG+PL+SGRL SSDCAPLIQRITS I SW ARV SFAGRLQL+  VLRS QVFWASV
Subjt:  GSLSGLIAKLEKSSMFVAGVDIEAATVLADSMGFALGTLPVRYLGVPLISGRLHSSDCAPLIQRITSWIWSWSARVLSFAGRLQLMCSVLRSFQVFWASV

Query:  FVLPVEVHHEVDRLLRSYLWRGKEDGRGGMKVAWVDVCRPFEERGLNIREGKSWNSSRILKVLWLMLTSA
        FVLP  VH++VD++LRSYLWR KE+GRGG+KVAWV+VC PFEE GL IR+G SWN +  LK+LWLMLT++
Subjt:  FVLPVEVHHEVDRLLRSYLWRGKEDGRGGMKVAWVDVCRPFEERGLNIREGKSWNSSRILKVLWLMLTSA

A0A5D3D5X6 Reverse transcriptase domain-containing protein

8.4e-63

71.76

Show/hide

Query:  GSLSGLIAKLEKSSMFVAGVDIEAATVLADSMGFALGTLPVRYLGVPLISGRLHSSDCAPLIQRITSWIWSWSARVLSFAGRLQLMCSVLRSFQVFWASV
        G LSGL A   KSS+FVAGV+ E A+ LA  MGF  G L VRYLG+PL++GRL S+DCAPLIQRITS I SW+ARVLSFAGR+QL+CSVLRS QV+WASV
Subjt:  GSLSGLIAKLEKSSMFVAGVDIEAATVLADSMGFALGTLPVRYLGVPLISGRLHSSDCAPLIQRITSWIWSWSARVLSFAGRLQLMCSVLRSFQVFWASV

Query:  FVLPVEVHHEVDRLLRSYLWRGKEDGRGGMKVAWVDVCRPFEERGLNIREGKSWNSSRILKVLWLMLTSA
        FVLP  VH+EVD++LRSYLWRGKE+GRGG+KVAWVDVC PFEE GL IR+G SWN +  LK+LWLMLT++
Subjt:  FVLPVEVHHEVDRLLRSYLWRGKEDGRGGMKVAWVDVCRPFEERGLNIREGKSWNSSRILKVLWLMLTSA

A0A5D3DXE4 Reverse transcriptase domain-containing protein

4.9e-63

72.35

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Query:  GSLSGLIAKLEKSSMFVAGVDIEAATVLADSMGFALGTLPVRYLGVPLISGRLHSSDCAPLIQRITSWIWSWSARVLSFAGRLQLMCSVLRSFQVFWASV
        G LSGL A   KSS+FVAGV+ E A+ LA  MGFA G LPVRYLG+PL++GRL S+DCAPLIQRITS I SW+ARVLSFAGRLQL+ SVLRS QV+WASV
Subjt:  GSLSGLIAKLEKSSMFVAGVDIEAATVLADSMGFALGTLPVRYLGVPLISGRLHSSDCAPLIQRITSWIWSWSARVLSFAGRLQLMCSVLRSFQVFWASV

Query:  FVLPVEVHHEVDRLLRSYLWRGKEDGRGGMKVAWVDVCRPFEERGLNIREGKSWNSSRILKVLWLMLTSA
        FVLP  VH+EVD++LRSYLWRGKE+GRGG+KVAWVDVC PFEE G  IR+G SWN +  LK+LWLMLT++
Subjt:  FVLPVEVHHEVDRLLRSYLWRGKEDGRGGMKVAWVDVCRPFEERGLNIREGKSWNSSRILKVLWLMLTSA

SwissProt top hits

e value

%identity

Alignment

P0C2F6 Putative ribonuclease H protein At1g65750

1.3e-15

34.43

Show/hide

Query:  VPLISGRLHSSDCAPLIQRITSWIWSWSARVLSFAGRLQLMCSVLRSFQVFWASVFVLPVEVHHEVDRLLRSYLWRGKEDGRGGMKVAWVDVCRPFEERG
        +P++  R++      +++R++S +  W  + LSFAGRL L  +VL S  V   S  +LP  + + +D+L R++LW    + +    V W  VC P +E G
Subjt:  VPLISGRLHSSDCAPLIQRITSWIWSWSARVLSFAGRLQLMCSVLRSFQVFWASVFVLPVEVHHEVDRLLRSYLWRGKEDGRGGMKVAWVDVCRPFEERG

Query:  LNIREGKSWNSSRILKVLWLML
        L +R  KS N + I KV W +L
Subjt:  LNIREGKSWNSSRILKVLWLML

Arabidopsis top hits

e value

%identity

Alignment

AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

3.0e-28

46.76

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Query:  VAGVDIEAATVLADSMGFALGTLPVRYLGVPLISGRLHSSDCAPLIQRITSWIWSWSARVLSFAGRLQLMCSVLRSFQVFWASVFVLPVEVHHEVDRLLR
        +AGV       +  S  FA G LPVRYLG+PL++ ++ +SD  PL+++I   I  W+AR LSFAGRLQL+ SV+ S   FW S F LP     E+D +  
Subjt:  VAGVDIEAATVLADSMGFALGTLPVRYLGVPLISGRLHSSDCAPLIQRITSWIWSWSARVLSFAGRLQLMCSVLRSFQVFWASVFVLPVEVHHEVDRLLR

Query:  SYLWRGKEDGRGGMKVAWVDVCRPFEERGLNIREGKSWN
        S+LW G E      KVAW DVC P +E GL IR  K  N
Subjt:  SYLWRGKEDGRGGMKVAWVDVCRPFEERGLNIREGKSWN

Sequences

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CDS sequence

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ATGTTGACATTGCTTCCATTGGCTTTGTGCGTGAGTCTCTTCGTCAGTTTGGGGAGTTTATCGGGGTTGATTGCTAAGCTGGAGAAGAGCTCTATGTTTGTGGCGGGGGT
TGACATTGAGGCTGCTACTGTGTTGGCAGATAGTATGGGGTTTGCGCTGGGTACTCTGCCTGTTCGTTACCTGGGTGTTCCCTTAATCTCTGGTCGGCTGCATTCTTCGG
ATTGTGCTCCGCTCATCCAGCGTATTACTAGTTGGATTTGGTCTTGGTCGGCTAGAGTTTTGTCCTTCGCTGGTAGACTTCAGCTTATGTGTTCGGTGTTGCGGAGTTTT
CAAGTCTTTTGGGCCAGTGTGTTTGTTTTGCCGGTGGAGGTGCATCATGAGGTTGATAGACTTTTGAGGTCGTATCTGTGGAGGGGTAAGGAGGATGGGAGAGGGGGTAT
GAAGGTTGCTTGGGTGGATGTGTGTCGCCCGTTTGAAGAACGGGGTCTAAATATTCGGGAGGGTAAGTCGTGGAACAGTTCGCGTATCTTGAAGGTTCTTTGGTTGATGT
TGACTAGTGCGTGTATCTGTGGGTTGCTTGGGTGGAGTCCTATATTCTGA

mRNA sequence

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Protein sequence

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MLTLLPLALCVSLFVSLGSLSGLIAKLEKSSMFVAGVDIEAATVLADSMGFALGTLPVRYLGVPLISGRLHSSDCAPLIQRITSWIWSWSARVLSFAGRLQLMCSVLRSF
QVFWASVFVLPVEVHHEVDRLLRSYLWRGKEDGRGGMKVAWVDVCRPFEERGLNIREGKSWNSSRILKVLWLMLTSACICGLLGWSPIF

PI0025241 (gene) of Melon (PI 482460) v1 genome