; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0025270 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0025270
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationchr06:14541386..14542968
RNA-Seq ExpressionPI0025270
SyntenyPI0025270
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025798.1 uncharacterized protein E6C27_scaffold34G00480 [Cucumis melo var. makuwa]7.4e-3442.74Show/hide
Query:  VQKLIVNLPTKLNNPSNPDFHIVHVRGCHFKLSPSILNEFLGLQFTVDSPLPTTSPDVVTSKLTGGTLKVWPLTGSIPVVSLNVKYAILYKIGIANCF--
        ++K+IVNLP + NNPS+PD+  VH+RG  FK+ P+I N F+G      S     S DV+   L+G TL VW L   IP +SL++KY ILYKI IAN F  
Subjt:  VQKLIVNLPTKLNNPSNPDFHIVHVRGCHFKLSPSILNEFLGLQFTVDSPLPTTSPDVVTSKLTGGTLKVWPLTGSIPVVSLNVKYAILYKIGIANCF--

Query:  ----------------------------LIHQHPNILLPSDAPGPAPKTLSLSYKLFQGSHTPDLTPFNQP--NSEHPDI-----SNSGVLIPPSLTSQL
                                    L+H + NIL   DA GP  KTLSLSYKLF+GSH PDL    +P  NS   DI     S  G  +P  L S++
Subjt:  ----------------------------LIHQHPNILLPSDAPGPAPKTLSLSYKLFQGSHTPDLTPFNQP--NSEHPDI-----SNSGVLIPPSLTSQL

Query:  IDLLKAESQVLGSSISILSARRSKVDSVLRQLKALISSSSS
        I+ L  ES+ L + I++L  RR +VDS++R LKA   SSS+
Subjt:  IDLLKAESQVLGSSISILSARRSKVDSVLRQLKALISSSSS

KAA0053607.1 uncharacterized protein E6C27_scaffold190G001830 [Cucumis melo var. makuwa]2.8e-3336.75Show/hide
Query:  VSLASLLRQKSLHRPSSQPKSHLPTLIPLSEPTALSPIPSSSPVQKLIVNLPTKLNNPSNPDFHIVHVRGCHFKLSPSILNEFLGLQFTVDSPLPTTSPD
        +S+ +L+ +  L +  S   S  P LI                 ++ IVNLP   N+PS+ D+ IVH+RG  F +SPS++N FLG    +D      + +
Subjt:  VSLASLLRQKSLHRPSSQPKSHLPTLIPLSEPTALSPIPSSSPVQKLIVNLPTKLNNPSNPDFHIVHVRGCHFKLSPSILNEFLGLQFTVDSPLPTTSPD

Query:  VVTSKLTGGTLKVWPLTGSIPVVSLNVKYAILYKIGIANCF----------------------------LIHQHPNILLPSDAPGPAPKTLSLSYKLFQG
        V+ + L+ GTL  WP+ G IP   LNVKYAIL+KIGIAN F                            L+H +  +L  SDAP P PKT++LSY+LFQG
Subjt:  VVTSKLTGGTLKVWPLTGSIPVVSLNVKYAILYKIGIANCF----------------------------LIHQHPNILLPSDAPGPAPKTLSLSYKLFQG

Query:  SHTPDLT----PFNQP---NSEHPDISNSGVLIPPSLTSQLIDLLKAESQVLGSSISILSARRSKVDSVLRQLKALISSSSSQ
        SH PD+     P   P   ++   D S  G  +   L +++I+ L AES+ L +SI++LS RR +VD+++R LK+   S+S Q
Subjt:  SHTPDLT----PFNQP---NSEHPDISNSGVLIPPSLTSQLIDLLKAESQVLGSSISILSARRSKVDSVLRQLKALISSSSSQ

TYK24860.1 uncharacterized protein E5676_scaffold184G001290 [Cucumis melo var. makuwa]5.3e-3236.57Show/hide
Query:  SIPKRRPFGRTSIDSKSSLCPPNVSNQLPSSLVVHSNTDSGDQDNVSLASLLRQKSLHRPSSQPKSHLPTLIPLSE-PTALSPIP--------SSSPVQK
        S+P   P G +  +   +    +++NQ P  +  H   +  D   + + + ++ KS  +   Q + ++ T +   + P  +S +P          S +++
Subjt:  SIPKRRPFGRTSIDSKSSLCPPNVSNQLPSSLVVHSNTDSGDQDNVSLASLLRQKSLHRPSSQPKSHLPTLIPLSE-PTALSPIP--------SSSPVQK

Query:  LIVNLPTKLNNPSNPDFHIVHVRGCHFKLSPSILNEFLGLQFTVDSPLPTTSPDVVTSKLTGGTLKVWPLTGSIPVVSLNVKYAILYKIGIANCFLIHQH
        LI NLP+  NN S+ D+H VH+RG  FK+S +++N FLG     +      S +V+ S L GGTL  WP+   IPVVSL+VKY IL++I IAN F     
Subjt:  LIVNLPTKLNNPSNPDFHIVHVRGCHFKLSPSILNEFLGLQFTVDSPLPTTSPDVVTSKLTGGTLKVWPLTGSIPVVSLNVKYAILYKIGIANCFLIHQH

Query:  PNILLPSDAPGPAPKTLSLSYKLFQGSHTPDLTPFNQPNSEHP---DISN-----SGVLIPPSLTSQLIDLLKAESQVLGSSISILSARRSKVDSVLRQL
        P+     DAPGP  K LSLSY+LFQGSH PD+    +P S +P   DI +      G  +   L S++I+LL  +S  L +SI++LS RR +V+S++R L
Subjt:  PNILLPSDAPGPAPKTLSLSYKLFQGSHTPDLTPFNQPNSEHP---DISN-----SGVLIPPSLTSQLIDLLKAESQVLGSSISILSARRSKVDSVLRQL

Query:  KALISSSSS
        K  ISSSS+
Subjt:  KALISSSSS

XP_008460447.1 PREDICTED: uncharacterized protein LOC103499259 [Cucumis melo]1.6e-3340Show/hide
Query:  VQKLIVNLPTKLNNPSNPDFHIVHVRGCHFKLSPSILNEFLGLQFTVDSPLPTTSPDVVTSKLTGGTLKVWPLTGSIPVVSLNVKYAILYKIGIANCF--
        +++ IVNLP   N+PS+ D+ IVH+RG  F +SPS++N FLG    +D      + +V+ + L+ GTL  WP+ G IP   LNVKYAIL+KIGIAN F  
Subjt:  VQKLIVNLPTKLNNPSNPDFHIVHVRGCHFKLSPSILNEFLGLQFTVDSPLPTTSPDVVTSKLTGGTLKVWPLTGSIPVVSLNVKYAILYKIGIANCF--

Query:  --------------------------LIHQHPNILLPSDAPGPAPKTLSLSYKLFQGSHTPDLT----PFNQP---NSEHPDISNSGVLIPPSLTSQLID
                                  L+H +  +L  SDAP P PKT++LSY+LFQGSH PD+     P   P   ++   D S  G  +   L +++I+
Subjt:  --------------------------LIHQHPNILLPSDAPGPAPKTLSLSYKLFQGSHTPDLT----PFNQP---NSEHPDISNSGVLIPPSLTSQLID

Query:  LLKAESQVLGSSISILSARRSKVDSVLRQLKALISSSSSQ
         L AES+ L +SI++LS RR +VD+++R LK+   S+S Q
Subjt:  LLKAESQVLGSSISILSARRSKVDSVLRQLKALISSSSSQ

XP_008462765.1 PREDICTED: uncharacterized protein LOC103501050 [Cucumis melo]4.8e-3336.08Show/hide
Query:  SIPKRRPFGRTSIDSKSSLCPPNVSNQLPSSLVVH-SNTDSGDQDNVSLASLLRQKSLHRPSSQPKS-------------------HLPTLIPLSEPTAL
        S+P   P G+++++   ++   N    L   +  H   TD+G   +V       Q    +PS+ PKS                    +P  IP +    +
Subjt:  SIPKRRPFGRTSIDSKSSLCPPNVSNQLPSSLVVH-SNTDSGDQDNVSLASLLRQKSLHRPSSQPKS-------------------HLPTLIPLSEPTAL

Query:  S-----PIPSSSPVQKLIVNLPTKLNNPSNPDFHIVHVRGCHFKLSPSILNEFLGLQFTVDSPLPTTSPDVVTSKLTGGTLKVWPLTGSIPVVSLNVKYA
        S      +      ++ IVNLP+K NNPS+PD+  V +RG +FK+SP+I+N FLG      S       DV+T  L+GGTL +WP+ G IP VSL +KY 
Subjt:  S-----PIPSSSPVQKLIVNLPTKLNNPSNPDFHIVHVRGCHFKLSPSILNEFLGLQFTVDSPLPTTSPDVVTSKLTGGTLKVWPLTGSIPVVSLNVKYA

Query:  ILYKIGIANCFLIHQHPNILLPSDAPGPAPKTLSLSYKLFQGSHTPDLTPFNQPNS-------EHPDISNSGVLIPPSLTSQLIDLLKAES
        IL+K+GI NC L+H +  IL  +DAPGP PK+LSLSY+ FQGSH PD+    +P+        +  D +  G L+   L S++I+ L AES
Subjt:  ILYKIGIANCFLIHQHPNILLPSDAPGPAPKTLSLSYKLFQGSHTPDLTPFNQPNS-------EHPDISNSGVLIPPSLTSQLIDLLKAES

TrEMBL top hitse value%identityAlignment
A0A1S3CC22 uncharacterized protein LOC1034992598.0e-3440Show/hide
Query:  VQKLIVNLPTKLNNPSNPDFHIVHVRGCHFKLSPSILNEFLGLQFTVDSPLPTTSPDVVTSKLTGGTLKVWPLTGSIPVVSLNVKYAILYKIGIANCF--
        +++ IVNLP   N+PS+ D+ IVH+RG  F +SPS++N FLG    +D      + +V+ + L+ GTL  WP+ G IP   LNVKYAIL+KIGIAN F  
Subjt:  VQKLIVNLPTKLNNPSNPDFHIVHVRGCHFKLSPSILNEFLGLQFTVDSPLPTTSPDVVTSKLTGGTLKVWPLTGSIPVVSLNVKYAILYKIGIANCF--

Query:  --------------------------LIHQHPNILLPSDAPGPAPKTLSLSYKLFQGSHTPDLT----PFNQP---NSEHPDISNSGVLIPPSLTSQLID
                                  L+H +  +L  SDAP P PKT++LSY+LFQGSH PD+     P   P   ++   D S  G  +   L +++I+
Subjt:  --------------------------LIHQHPNILLPSDAPGPAPKTLSLSYKLFQGSHTPDLT----PFNQP---NSEHPDISNSGVLIPPSLTSQLID

Query:  LLKAESQVLGSSISILSARRSKVDSVLRQLKALISSSSSQ
         L AES+ L +SI++LS RR +VD+++R LK+   S+S Q
Subjt:  LLKAESQVLGSSISILSARRSKVDSVLRQLKALISSSSSQ

A0A1S3CHR6 uncharacterized protein LOC1035010502.3e-3336.08Show/hide
Query:  SIPKRRPFGRTSIDSKSSLCPPNVSNQLPSSLVVH-SNTDSGDQDNVSLASLLRQKSLHRPSSQPKS-------------------HLPTLIPLSEPTAL
        S+P   P G+++++   ++   N    L   +  H   TD+G   +V       Q    +PS+ PKS                    +P  IP +    +
Subjt:  SIPKRRPFGRTSIDSKSSLCPPNVSNQLPSSLVVH-SNTDSGDQDNVSLASLLRQKSLHRPSSQPKS-------------------HLPTLIPLSEPTAL

Query:  S-----PIPSSSPVQKLIVNLPTKLNNPSNPDFHIVHVRGCHFKLSPSILNEFLGLQFTVDSPLPTTSPDVVTSKLTGGTLKVWPLTGSIPVVSLNVKYA
        S      +      ++ IVNLP+K NNPS+PD+  V +RG +FK+SP+I+N FLG      S       DV+T  L+GGTL +WP+ G IP VSL +KY 
Subjt:  S-----PIPSSSPVQKLIVNLPTKLNNPSNPDFHIVHVRGCHFKLSPSILNEFLGLQFTVDSPLPTTSPDVVTSKLTGGTLKVWPLTGSIPVVSLNVKYA

Query:  ILYKIGIANCFLIHQHPNILLPSDAPGPAPKTLSLSYKLFQGSHTPDLTPFNQPNS-------EHPDISNSGVLIPPSLTSQLIDLLKAES
        IL+K+GI NC L+H +  IL  +DAPGP PK+LSLSY+ FQGSH PD+    +P+        +  D +  G L+   L S++I+ L AES
Subjt:  ILYKIGIANCFLIHQHPNILLPSDAPGPAPKTLSLSYKLFQGSHTPDLTPFNQPNS-------EHPDISNSGVLIPPSLTSQLIDLLKAES

A0A5A7UGJ3 Uncharacterized protein1.4e-3336.75Show/hide
Query:  VSLASLLRQKSLHRPSSQPKSHLPTLIPLSEPTALSPIPSSSPVQKLIVNLPTKLNNPSNPDFHIVHVRGCHFKLSPSILNEFLGLQFTVDSPLPTTSPD
        +S+ +L+ +  L +  S   S  P LI                 ++ IVNLP   N+PS+ D+ IVH+RG  F +SPS++N FLG    +D      + +
Subjt:  VSLASLLRQKSLHRPSSQPKSHLPTLIPLSEPTALSPIPSSSPVQKLIVNLPTKLNNPSNPDFHIVHVRGCHFKLSPSILNEFLGLQFTVDSPLPTTSPD

Query:  VVTSKLTGGTLKVWPLTGSIPVVSLNVKYAILYKIGIANCF----------------------------LIHQHPNILLPSDAPGPAPKTLSLSYKLFQG
        V+ + L+ GTL  WP+ G IP   LNVKYAIL+KIGIAN F                            L+H +  +L  SDAP P PKT++LSY+LFQG
Subjt:  VVTSKLTGGTLKVWPLTGSIPVVSLNVKYAILYKIGIANCF----------------------------LIHQHPNILLPSDAPGPAPKTLSLSYKLFQG

Query:  SHTPDLT----PFNQP---NSEHPDISNSGVLIPPSLTSQLIDLLKAESQVLGSSISILSARRSKVDSVLRQLKALISSSSSQ
        SH PD+     P   P   ++   D S  G  +   L +++I+ L AES+ L +SI++LS RR +VD+++R LK+   S+S Q
Subjt:  SHTPDLT----PFNQP---NSEHPDISNSGVLIPPSLTSQLIDLLKAESQVLGSSISILSARRSKVDSVLRQLKALISSSSSQ

A0A5D3CEK6 Uncharacterized protein3.6e-3442.74Show/hide
Query:  VQKLIVNLPTKLNNPSNPDFHIVHVRGCHFKLSPSILNEFLGLQFTVDSPLPTTSPDVVTSKLTGGTLKVWPLTGSIPVVSLNVKYAILYKIGIANCF--
        ++K+IVNLP + NNPS+PD+  VH+RG  FK+ P+I N F+G      S     S DV+   L+G TL VW L   IP +SL++KY ILYKI IAN F  
Subjt:  VQKLIVNLPTKLNNPSNPDFHIVHVRGCHFKLSPSILNEFLGLQFTVDSPLPTTSPDVVTSKLTGGTLKVWPLTGSIPVVSLNVKYAILYKIGIANCF--

Query:  ----------------------------LIHQHPNILLPSDAPGPAPKTLSLSYKLFQGSHTPDLTPFNQP--NSEHPDI-----SNSGVLIPPSLTSQL
                                    L+H + NIL   DA GP  KTLSLSYKLF+GSH PDL    +P  NS   DI     S  G  +P  L S++
Subjt:  ----------------------------LIHQHPNILLPSDAPGPAPKTLSLSYKLFQGSHTPDLTPFNQP--NSEHPDI-----SNSGVLIPPSLTSQL

Query:  IDLLKAESQVLGSSISILSARRSKVDSVLRQLKALISSSSS
        I+ L  ES+ L + I++L  RR +VDS++R LKA   SSS+
Subjt:  IDLLKAESQVLGSSISILSARRSKVDSVLRQLKALISSSSS

A0A5D3DNK5 Uncharacterized protein2.6e-3236.57Show/hide
Query:  SIPKRRPFGRTSIDSKSSLCPPNVSNQLPSSLVVHSNTDSGDQDNVSLASLLRQKSLHRPSSQPKSHLPTLIPLSE-PTALSPIP--------SSSPVQK
        S+P   P G +  +   +    +++NQ P  +  H   +  D   + + + ++ KS  +   Q + ++ T +   + P  +S +P          S +++
Subjt:  SIPKRRPFGRTSIDSKSSLCPPNVSNQLPSSLVVHSNTDSGDQDNVSLASLLRQKSLHRPSSQPKSHLPTLIPLSE-PTALSPIP--------SSSPVQK

Query:  LIVNLPTKLNNPSNPDFHIVHVRGCHFKLSPSILNEFLGLQFTVDSPLPTTSPDVVTSKLTGGTLKVWPLTGSIPVVSLNVKYAILYKIGIANCFLIHQH
        LI NLP+  NN S+ D+H VH+RG  FK+S +++N FLG     +      S +V+ S L GGTL  WP+   IPVVSL+VKY IL++I IAN F     
Subjt:  LIVNLPTKLNNPSNPDFHIVHVRGCHFKLSPSILNEFLGLQFTVDSPLPTTSPDVVTSKLTGGTLKVWPLTGSIPVVSLNVKYAILYKIGIANCFLIHQH

Query:  PNILLPSDAPGPAPKTLSLSYKLFQGSHTPDLTPFNQPNSEHP---DISN-----SGVLIPPSLTSQLIDLLKAESQVLGSSISILSARRSKVDSVLRQL
        P+     DAPGP  K LSLSY+LFQGSH PD+    +P S +P   DI +      G  +   L S++I+LL  +S  L +SI++LS RR +V+S++R L
Subjt:  PNILLPSDAPGPAPKTLSLSYKLFQGSHTPDLTPFNQPNSEHP---DISN-----SGVLIPPSLTSQLIDLLKAESQVLGSSISILSARRSKVDSVLRQL

Query:  KALISSSSS
        K  ISSSS+
Subjt:  KALISSSSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTCTACACGTAAAATCAGTTACTCTTCACGATCCTCTGAAGCTCCTATCAATCCCAGTCCTCGTTTCAACATGCATGGTGTCCGATTGCGAGGAGGGACTCGTTT
CAAAAGTATCCCTAAACGACGGCCGTTTGGAAGAACATCCATTGACAGCAAGTCTTCTCTATGTCCTCCTAATGTGTCCAACCAATTACCCTCTTCCTTGGTTGTCCATT
CTAACACTGACTCAGGTGACCAAGATAATGTAAGCCTAGCTTCCTTGCTTCGTCAAAAATCTCTCCATCGTCCTTCATCTCAACCGAAATCCCATTTACCCACTTTGATC
CCCTTATCTGAGCCTACTGCTTTGTCTCCTATTCCTTCCTCTTCACCTGTTCAGAAACTAATAGTGAACCTTCCTACTAAACTTAATAATCCCAGCAATCCTGACTTCCA
TATTGTTCACGTTCGTGGGTGTCACTTTAAACTTTCCCCATCTATACTCAATGAGTTTCTCGGACTTCAGTTCACTGTTGATTCTCCTTTGCCAACCACTTCACCTGATG
TTGTAACTTCAAAATTAACTGGAGGAACCCTGAAAGTTTGGCCCTTGACTGGATCCATTCCTGTTGTGTCTCTCAACGTTAAATATGCAATTCTTTATAAAATAGGAATA
GCGAACTGTTTCCTGATACATCAACATCCTAATATCCTACTTCCCTCTGATGCCCCTGGACCTGCTCCAAAAACCTTGTCTCTAAGTTATAAGCTCTTTCAGGGTTCTCA
TACACCAGATCTTACCCCATTTAATCAGCCTAATTCTGAGCATCCTGACATATCTAATTCTGGAGTTCTGATTCCTCCATCCTTGACGTCCCAGTTGATTGATTTGTTAA
AAGCTGAGTCCCAAGTTTTGGGGAGCTCAATCTCTATCTTATCTGCCCGTCGCTCTAAGGTTGACTCCGTTCTTAGACAGTTGAAGGCGTTGATCTCTTCCAGTTCTTCA
CAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTCTACACGTAAAATCAGTTACTCTTCACGATCCTCTGAAGCTCCTATCAATCCCAGTCCTCGTTTCAACATGCATGGTGTCCGATTGCGAGGAGGGACTCGTTT
CAAAAGTATCCCTAAACGACGGCCGTTTGGAAGAACATCCATTGACAGCAAGTCTTCTCTATGTCCTCCTAATGTGTCCAACCAATTACCCTCTTCCTTGGTTGTCCATT
CTAACACTGACTCAGGTGACCAAGATAATGTAAGCCTAGCTTCCTTGCTTCGTCAAAAATCTCTCCATCGTCCTTCATCTCAACCGAAATCCCATTTACCCACTTTGATC
CCCTTATCTGAGCCTACTGCTTTGTCTCCTATTCCTTCCTCTTCACCTGTTCAGAAACTAATAGTGAACCTTCCTACTAAACTTAATAATCCCAGCAATCCTGACTTCCA
TATTGTTCACGTTCGTGGGTGTCACTTTAAACTTTCCCCATCTATACTCAATGAGTTTCTCGGACTTCAGTTCACTGTTGATTCTCCTTTGCCAACCACTTCACCTGATG
TTGTAACTTCAAAATTAACTGGAGGAACCCTGAAAGTTTGGCCCTTGACTGGATCCATTCCTGTTGTGTCTCTCAACGTTAAATATGCAATTCTTTATAAAATAGGAATA
GCGAACTGTTTCCTGATACATCAACATCCTAATATCCTACTTCCCTCTGATGCCCCTGGACCTGCTCCAAAAACCTTGTCTCTAAGTTATAAGCTCTTTCAGGGTTCTCA
TACACCAGATCTTACCCCATTTAATCAGCCTAATTCTGAGCATCCTGACATATCTAATTCTGGAGTTCTGATTCCTCCATCCTTGACGTCCCAGTTGATTGATTTGTTAA
AAGCTGAGTCCCAAGTTTTGGGGAGCTCAATCTCTATCTTATCTGCCCGTCGCTCTAAGGTTGACTCCGTTCTTAGACAGTTGAAGGCGTTGATCTCTTCCAGTTCTTCA
CAGTAA
Protein sequenceShow/hide protein sequence
MVSTRKISYSSRSSEAPINPSPRFNMHGVRLRGGTRFKSIPKRRPFGRTSIDSKSSLCPPNVSNQLPSSLVVHSNTDSGDQDNVSLASLLRQKSLHRPSSQPKSHLPTLI
PLSEPTALSPIPSSSPVQKLIVNLPTKLNNPSNPDFHIVHVRGCHFKLSPSILNEFLGLQFTVDSPLPTTSPDVVTSKLTGGTLKVWPLTGSIPVVSLNVKYAILYKIGI
ANCFLIHQHPNILLPSDAPGPAPKTLSLSYKLFQGSHTPDLTPFNQPNSEHPDISNSGVLIPPSLTSQLIDLLKAESQVLGSSISILSARRSKVDSVLRQLKALISSSSS
Q