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PI0025280 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0025280
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr02:17360144..17360698
RNA-Seq ExpressionPI0025280
SyntenyPI0025280
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036791.1 retrotransposon protein [Cucumis melo var. makuwa]6.7e-4461.84Show/hide
Query:  EVPVTFVLSHPAAKGLLNKPFPHYDDLCYIFGRDRATGGRGETFADVGSNVPAGYDGFPAYDGNDMEFPTMYSQGLDMSPNDIMGTRPGRLSEGRAGSSG
        EV   +V SHPAAKGLLNK F HYD+L Y+FG+DR+TGGR E+FAD+GSN PAGYD F A    D +FP+MYSQGL+MSP+D+MGTR  R+SE R  SS 
Subjt:  EVPVTFVLSHPAAKGLLNKPFPHYDDLCYIFGRDRATGGRGETFADVGSNVPAGYDGFPAYDGNDMEFPTMYSQGLDMSPNDIMGTRPGRLSEGRAGSSG

Query:  LKRKQGGQAFETAEIIRSAMEYANDQLKAIAEWPKEQRQDASVTHAEVVRQL
         KRK+ G A ++  I+R+A+EY N+QL  IAEWP  QRQDAS T  E++RQL
Subjt:  LKRKQGGQAFETAEIIRSAMEYANDQLKAIAEWPKEQRQDASVTHAEVVRQL

KAA0048280.1 retrotransposon protein [Cucumis melo var. makuwa]3.0e-4462.5Show/hide
Query:  EVPVTFVLSHPAAKGLLNKPFPHYDDLCYIFGRDRATGGRGETFADVGSNVPAGYDGFPAYDGNDMEFPTMYSQGLDMSPNDIMGTRPGRLSEGRAGSSG
        EV   +V SHPAAKGLLNK F HYD+L Y+FG+DRATGGR E+FAD+GSN PAGYD F A D +D +F  MYS GL+MSP+D+M TR  R+SE R  SSG
Subjt:  EVPVTFVLSHPAAKGLLNKPFPHYDDLCYIFGRDRATGGRGETFADVGSNVPAGYDGFPAYDGNDMEFPTMYSQGLDMSPNDIMGTRPGRLSEGRAGSSG

Query:  LKRKQGGQAFETAEIIRSAMEYANDQLKAIAEWPKEQRQDASVTHAEVVRQL
         KRK+ G A ++ +I+R+AMEY N+QL  IAEWP  QRQDA+ T  E+VRQL
Subjt:  LKRKQGGQAFETAEIIRSAMEYANDQLKAIAEWPKEQRQDASVTHAEVVRQL

KAA0048374.1 retrotransposon protein [Cucumis melo var. makuwa]8.8e-4460.53Show/hide
Query:  EVPVTFVLSHPAAKGLLNKPFPHYDDLCYIFGRDRATGGRGETFADVGSNVPAGYDGFPAYDGNDMEFPTMYSQGLDMSPNDIMGTRPGRLSEGRAGSSG
        EV   +V SHPAAKGLLNK FPHYD+L Y+F +D ATGGR E+FADVGSN P GYD F A   +D +F  MYS+GL+MSP+++MGTR  R+SEGR  SSG
Subjt:  EVPVTFVLSHPAAKGLLNKPFPHYDDLCYIFGRDRATGGRGETFADVGSNVPAGYDGFPAYDGNDMEFPTMYSQGLDMSPNDIMGTRPGRLSEGRAGSSG

Query:  LKRKQGGQAFETAEIIRSAMEYANDQLKAIAEWPKEQRQDASVTHAEVVRQL
         K+K+GG   ++ +I+R+A+EY N+QL  IAEW   QRQDA+ T  EVVRQL
Subjt:  LKRKQGGQAFETAEIIRSAMEYANDQLKAIAEWPKEQRQDASVTHAEVVRQL

KAA0050216.1 retrotransposon protein [Cucumis melo var. makuwa]7.4e-4361.9Show/hide
Query:  FVLSHPAAKGLLNKPFPHYDDLCYIFGRDRATGGRGETFADVGSNVPAGYDGFPAYDGNDMEFPTMYSQGLDMSPNDIMGTRPGRLSEGRAGSSGLKRKQ
        +V SHPAAKGLLNK F HYD+L Y+FG+DRATGGR E FAD+G N PA YD F A    D +FP MYSQGL+MSP+D+MGTR  R+SE R   SG KRK+
Subjt:  FVLSHPAAKGLLNKPFPHYDDLCYIFGRDRATGGRGETFADVGSNVPAGYDGFPAYDGNDMEFPTMYSQGLDMSPNDIMGTRPGRLSEGRAGSSGLKRKQ

Query:  GGQAFETAEIIRSAMEYANDQLKAIAEWPKEQRQDASVTHAEVVRQL
         G A ++ +I+R+A+EY N+Q+  IAEWP  QRQDAS T  E+VRQL
Subjt:  GGQAFETAEIIRSAMEYANDQLKAIAEWPKEQRQDASVTHAEVVRQL

KAA0050782.1 retrotransposon protein [Cucumis melo var. makuwa]1.7e-4261.18Show/hide
Query:  EVPVTFVLSHPAAKGLLNKPFPHYDDLCYIFGRDRATGGRGETFADVGSNVPAGYDGFPAYDGNDMEFPTMYSQGLDMSPNDIMGTRPGRLSEGRAGSSG
        EV   +V SHPAAKGLLNK F HYD+L Y+FG+DRATGGR E+FAD+GSN PAGYD F A    D +FP MYS GL+MSP+D+M TR  R+SE R  SSG
Subjt:  EVPVTFVLSHPAAKGLLNKPFPHYDDLCYIFGRDRATGGRGETFADVGSNVPAGYDGFPAYDGNDMEFPTMYSQGLDMSPNDIMGTRPGRLSEGRAGSSG

Query:  LKRKQGGQAFETAEIIRSAMEYANDQLKAIAEWPKEQRQDASVTHAEVVRQL
         K K+ G A ++ +I+R+A+EY N+QL  IAEWP  QRQDA+ T  E+VRQL
Subjt:  LKRKQGGQAFETAEIIRSAMEYANDQLKAIAEWPKEQRQDASVTHAEVVRQL

TrEMBL top hitse value%identityAlignment
A0A5A7TYQ6 Retrotransposon protein1.5e-4462.5Show/hide
Query:  EVPVTFVLSHPAAKGLLNKPFPHYDDLCYIFGRDRATGGRGETFADVGSNVPAGYDGFPAYDGNDMEFPTMYSQGLDMSPNDIMGTRPGRLSEGRAGSSG
        EV   +V SHPAAKGLLNK F HYD+L Y+FG+DRATGGR E+FAD+GSN PAGYD F A D +D +F  MYS GL+MSP+D+M TR  R+SE R  SSG
Subjt:  EVPVTFVLSHPAAKGLLNKPFPHYDDLCYIFGRDRATGGRGETFADVGSNVPAGYDGFPAYDGNDMEFPTMYSQGLDMSPNDIMGTRPGRLSEGRAGSSG

Query:  LKRKQGGQAFETAEIIRSAMEYANDQLKAIAEWPKEQRQDASVTHAEVVRQL
         KRK+ G A ++ +I+R+AMEY N+QL  IAEWP  QRQDA+ T  E+VRQL
Subjt:  LKRKQGGQAFETAEIIRSAMEYANDQLKAIAEWPKEQRQDASVTHAEVVRQL

A0A5A7TZA5 Retrotransposon protein4.2e-4460.53Show/hide
Query:  EVPVTFVLSHPAAKGLLNKPFPHYDDLCYIFGRDRATGGRGETFADVGSNVPAGYDGFPAYDGNDMEFPTMYSQGLDMSPNDIMGTRPGRLSEGRAGSSG
        EV   +V SHPAAKGLLNK FPHYD+L Y+F +D ATGGR E+FADVGSN P GYD F A   +D +F  MYS+GL+MSP+++MGTR  R+SEGR  SSG
Subjt:  EVPVTFVLSHPAAKGLLNKPFPHYDDLCYIFGRDRATGGRGETFADVGSNVPAGYDGFPAYDGNDMEFPTMYSQGLDMSPNDIMGTRPGRLSEGRAGSSG

Query:  LKRKQGGQAFETAEIIRSAMEYANDQLKAIAEWPKEQRQDASVTHAEVVRQL
         K+K+GG   ++ +I+R+A+EY N+QL  IAEW   QRQDA+ T  EVVRQL
Subjt:  LKRKQGGQAFETAEIIRSAMEYANDQLKAIAEWPKEQRQDASVTHAEVVRQL

A0A5A7U4M2 Retrotransposon protein8.0e-4361.18Show/hide
Query:  EVPVTFVLSHPAAKGLLNKPFPHYDDLCYIFGRDRATGGRGETFADVGSNVPAGYDGFPAYDGNDMEFPTMYSQGLDMSPNDIMGTRPGRLSEGRAGSSG
        EV   +V SHPAAKGLLNK F HYD+L Y+FG+DRATGGR E+FAD+GSN PAGYD F A    D +FP MYS GL+MSP+D+M TR  R+SE R  SSG
Subjt:  EVPVTFVLSHPAAKGLLNKPFPHYDDLCYIFGRDRATGGRGETFADVGSNVPAGYDGFPAYDGNDMEFPTMYSQGLDMSPNDIMGTRPGRLSEGRAGSSG

Query:  LKRKQGGQAFETAEIIRSAMEYANDQLKAIAEWPKEQRQDASVTHAEVVRQL
         K K+ G A ++ +I+R+A+EY N+QL  IAEWP  QRQDA+ T  E+VRQL
Subjt:  LKRKQGGQAFETAEIIRSAMEYANDQLKAIAEWPKEQRQDASVTHAEVVRQL

A0A5A7U7R0 Retrotransposon protein3.6e-4361.9Show/hide
Query:  FVLSHPAAKGLLNKPFPHYDDLCYIFGRDRATGGRGETFADVGSNVPAGYDGFPAYDGNDMEFPTMYSQGLDMSPNDIMGTRPGRLSEGRAGSSGLKRKQ
        +V SHPAAKGLLNK F HYD+L Y+FG+DRATGGR E FAD+G N PA YD F A    D +FP MYSQGL+MSP+D+MGTR  R+SE R   SG KRK+
Subjt:  FVLSHPAAKGLLNKPFPHYDDLCYIFGRDRATGGRGETFADVGSNVPAGYDGFPAYDGNDMEFPTMYSQGLDMSPNDIMGTRPGRLSEGRAGSSGLKRKQ

Query:  GGQAFETAEIIRSAMEYANDQLKAIAEWPKEQRQDASVTHAEVVRQL
         G A ++ +I+R+A+EY N+Q+  IAEWP  QRQDAS T  E+VRQL
Subjt:  GGQAFETAEIIRSAMEYANDQLKAIAEWPKEQRQDASVTHAEVVRQL

A0A5D3BC43 Retrotransposon protein3.2e-4461.84Show/hide
Query:  EVPVTFVLSHPAAKGLLNKPFPHYDDLCYIFGRDRATGGRGETFADVGSNVPAGYDGFPAYDGNDMEFPTMYSQGLDMSPNDIMGTRPGRLSEGRAGSSG
        EV   +V SHPAAKGLLNK F HYD+L Y+FG+DR+TGGR E+FAD+GSN PAGYD F A    D +FP+MYSQGL+MSP+D+MGTR  R+SE R  SS 
Subjt:  EVPVTFVLSHPAAKGLLNKPFPHYDDLCYIFGRDRATGGRGETFADVGSNVPAGYDGFPAYDGNDMEFPTMYSQGLDMSPNDIMGTRPGRLSEGRAGSSG

Query:  LKRKQGGQAFETAEIIRSAMEYANDQLKAIAEWPKEQRQDASVTHAEVVRQL
         KRK+ G A ++  I+R+A+EY N+QL  IAEWP  QRQDAS T  E++RQL
Subjt:  LKRKQGGQAFETAEIIRSAMEYANDQLKAIAEWPKEQRQDASVTHAEVVRQL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATCATTGCGGAGAAAGACTTATACGACAATTGGGTGAAGTTCCTGTAACATTTGTACTGAGTCATCCAGCCGCAAAGGGCCTCCTAAACAAACCCTTTCCCCATTA
CGACGACCTATGCTACATCTTTGGAAGAGATCGTGCAACAGGAGGTCGCGGTGAAACCTTTGCCGATGTTGGGTCGAACGTGCCTGCAGGATACGATGGATTTCCCGCTT
ATGATGGGAACGATATGGAGTTCCCGACGATGTACAGTCAGGGGCTGGACATGTCACCTAACGACATAATGGGTACACGACCTGGTCGGTTGTCTGAGGGTAGGGCTGGT
TCGAGTGGTTTAAAAAGGAAACAGGGAGGGCAGGCGTTCGAGACGGCAGAAATTATTCGCAGTGCCATGGAATATGCGAATGACCAGCTAAAGGCCATTGCAGAATGGCC
TAAAGAACAACGCCAAGATGCAAGCGTGACACATGCGGAAGTTGTTAGACAACTATAG
mRNA sequenceShow/hide mRNA sequence
ATGCATCATTGCGGAGAAAGACTTATACGACAATTGGGTGAAGTTCCTGTAACATTTGTACTGAGTCATCCAGCCGCAAAGGGCCTCCTAAACAAACCCTTTCCCCATTA
CGACGACCTATGCTACATCTTTGGAAGAGATCGTGCAACAGGAGGTCGCGGTGAAACCTTTGCCGATGTTGGGTCGAACGTGCCTGCAGGATACGATGGATTTCCCGCTT
ATGATGGGAACGATATGGAGTTCCCGACGATGTACAGTCAGGGGCTGGACATGTCACCTAACGACATAATGGGTACACGACCTGGTCGGTTGTCTGAGGGTAGGGCTGGT
TCGAGTGGTTTAAAAAGGAAACAGGGAGGGCAGGCGTTCGAGACGGCAGAAATTATTCGCAGTGCCATGGAATATGCGAATGACCAGCTAAAGGCCATTGCAGAATGGCC
TAAAGAACAACGCCAAGATGCAAGCGTGACACATGCGGAAGTTGTTAGACAACTATAG
Protein sequenceShow/hide protein sequence
MHHCGERLIRQLGEVPVTFVLSHPAAKGLLNKPFPHYDDLCYIFGRDRATGGRGETFADVGSNVPAGYDGFPAYDGNDMEFPTMYSQGLDMSPNDIMGTRPGRLSEGRAG
SSGLKRKQGGQAFETAEIIRSAMEYANDQLKAIAEWPKEQRQDASVTHAEVVRQL