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PI0025300 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0025300
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr11:24279469..24279883
RNA-Seq ExpressionPI0025300
SyntenyPI0025300
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsIPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046998.1 reverse transcriptase [Cucumis melo var. makuwa]1.6e-0958.93Show/hide
Query:  GTNIKLGVMAEEKWISVTYEKLFDFCYNCGILEHVLQECEVKVEGLGHYQKYGVWL
        GT  KLGVMA+EKWI V+YEKL DFCY CG + HV+QEC+   +     Q++GVWL
Subjt:  GTNIKLGVMAEEKWISVTYEKLFDFCYNCGILEHVLQECEVKVEGLGHYQKYGVWL

KAF4400882.1 hypothetical protein G4B88_004425 [Cannabis sativa]5.8e-0439.68Show/hide
Query:  LNRGTNIKLGVMAEEKWISVTYEKLFDFCYNCGILEHVLQEC----EVKVEGLGHYQKYGVWL
        L RG  + L  + +E WI   YE++ DFCY+CGI+ H   +C    E   EGL    +YG W+
Subjt:  LNRGTNIKLGVMAEEKWISVTYEKLFDFCYNCGILEHVLQEC----EVKVEGLGHYQKYGVWL

OMO50761.1 Zinc finger, CCHC-type [Corchorus capsularis]7.6e-0447.83Show/hide
Query:  EEKWISVTYEKLFDFCYNCGILEHVLQECEVKVEGLGHYQKYGVWL
        E  W  + YE+L DFCYNCG L H+ + CE   E     QKYG W+
Subjt:  EEKWISVTYEKLFDFCYNCGILEHVLQECEVKVEGLGHYQKYGVWL

PON88167.1 Zinc finger, CCHC-type [Trema orientale]1.8e-0540.91Show/hide
Query:  TTTLNRGTNIKLGVMAEEKWISVTYEKLFDFCYNCGILEHVLQEC----EVKVEGLGHYQKYGVWL
        T  L+RG  IKL  +A+  WI   YE+L +FC+ CG L H+   C    E++ +GL  +  YG WL
Subjt:  TTTLNRGTNIKLGVMAEEKWISVTYEKLFDFCYNCGILEHVLQEC----EVKVEGLGHYQKYGVWL

XP_030969817.1 uncharacterized protein LOC115990093 [Quercus lobata]5.8e-0439.39Show/hide
Query:  TTTLNRGTNIKLGVMAEEKWISVTYEKLFDFCYNCGILEHVLQECEVKVEGLG----HYQKYGVWL
        T  L+RG  + +G   +E W+S  YEK+ +FCY CG++ H  +EC+V +   G      Q+YG WL
Subjt:  TTTLNRGTNIKLGVMAEEKWISVTYEKLFDFCYNCGILEHVLQECEVKVEGLG----HYQKYGVWL

TrEMBL top hitse value%identityAlignment
A0A0A0LNB5 CCHC-type domain-containing protein9.3e-2456.59Show/hide
Query:  MLSSSLKSLEELIPSQRLT--SDLALFA---KYVVVLANSIDSFEE-----------------RKNRCTTTLNRGTNIKLGVMAEEKWISVTYEKLFDFC
        M S SLK +EEL PSQRLT  S  + F    KYVV L NSIDSFEE                  K     +LN  TNIKLG MA+EK I VTYEKL DFC
Subjt:  MLSSSLKSLEELIPSQRLT--SDLALFA---KYVVVLANSIDSFEE-----------------RKNRCTTTLNRGTNIKLGVMAEEKWISVTYEKLFDFC

Query:  YNCGILEHVLQECEVKVEGLGHYQKYGVW
        YNCGIL HVLQECEVKVEG G Y++  +W
Subjt:  YNCGILEHVLQECEVKVEGLGHYQKYGVW

A0A2P5ERJ3 Zinc finger, CCHC-type8.7e-0640.91Show/hide
Query:  TTTLNRGTNIKLGVMAEEKWISVTYEKLFDFCYNCGILEHVLQEC----EVKVEGLGHYQKYGVWL
        T  L+RG  IKL  +A+  WI   YE+L +FC+ CG L H+   C    E++ +GL  +  YG WL
Subjt:  TTTLNRGTNIKLGVMAEEKWISVTYEKLFDFCYNCGILEHVLQEC----EVKVEGLGHYQKYGVWL

A0A5D3C0K2 Reverse transcriptase7.6e-1058.93Show/hide
Query:  GTNIKLGVMAEEKWISVTYEKLFDFCYNCGILEHVLQECEVKVEGLGHYQKYGVWL
        GT  KLGVMA+EKWI V+YEKL DFCY CG + HV+QEC+   +     Q++GVWL
Subjt:  GTNIKLGVMAEEKWISVTYEKLFDFCYNCGILEHVLQECEVKVEGLGHYQKYGVWL

A0A803MJ98 Uncharacterized protein4.3e-0542.86Show/hide
Query:  LNRGTNIKLGVMAEEKWISVTYEKLFDFCYNCGILEHVLQECEVKVE----GLGHYQKYGVWL
        L RG  + +GV A+ KW+ + YE+L DFC+ CG+L+H  +EC  K E    G     +YG WL
Subjt:  LNRGTNIKLGVMAEEKWISVTYEKLFDFCYNCGILEHVLQECEVKVE----GLGHYQKYGVWL

A0A803NU77 Uncharacterized protein1.6e-0441.27Show/hide
Query:  LNRGTNIKLGVMAEEKWISVTYEKLFDFCYNCGILEHVLQECEVKVE----GLGHYQKYGVWL
        L RG  +    MA+E WI   YE+L DFCY CGI+ HV  +C + +E    G+     YG W+
Subjt:  LNRGTNIKLGVMAEEKWISVTYEKLFDFCYNCGILEHVLQECEVKVE----GLGHYQKYGVWL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCTCCTCCTCTTTGAAGAGCCTAGAGGAATTAATACCCTCACAAAGATTAACTTCAGATTTAGCTCTTTTTGCAAAATATGTGGTTGTGCTGGCAAACTCCATCGA
TTCATTTGAAGAAAGGAAAAATCGATGTACAACAACCCTGAACCGTGGAACGAATATCAAATTAGGGGTTATGGCGGAAGAAAAATGGATCTCAGTTACCTATGAGAAGC
TATTTGATTTTTGTTATAACTGTGGGATACTAGAGCATGTTCTACAAGAATGTGAGGTCAAGGTTGAAGGCCTTGGACACTACCAAAAATATGGTGTTTGGCTATAA
mRNA sequenceShow/hide mRNA sequence
ATGCTCTCCTCCTCTTTGAAGAGCCTAGAGGAATTAATACCCTCACAAAGATTAACTTCAGATTTAGCTCTTTTTGCAAAATATGTGGTTGTGCTGGCAAACTCCATCGA
TTCATTTGAAGAAAGGAAAAATCGATGTACAACAACCCTGAACCGTGGAACGAATATCAAATTAGGGGTTATGGCGGAAGAAAAATGGATCTCAGTTACCTATGAGAAGC
TATTTGATTTTTGTTATAACTGTGGGATACTAGAGCATGTTCTACAAGAATGTGAGGTCAAGGTTGAAGGCCTTGGACACTACCAAAAATATGGTGTTTGGCTATAA
Protein sequenceShow/hide protein sequence
MLSSSLKSLEELIPSQRLTSDLALFAKYVVVLANSIDSFEERKNRCTTTLNRGTNIKLGVMAEEKWISVTYEKLFDFCYNCGILEHVLQECEVKVEGLGHYQKYGVWL