CuGenDBv2

Gene ID	PI0025329
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Genome location	chr05:18770549..18771439
RNA-Seq Expression	PI0025329
Synteny	PI0025329
Gene Ontology terms	NA
InterPro domains	IPR026960 - Reverse transcriptase zinc-binding domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0039950.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

5.2e-70

47.06

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Query:  DNQGSVKDMWDPLINNWNIKLRRPLRDHESHQWNDLVCLLPRPNNSNEADIPIWNLNTNRNFSIASVKNNIFQTHLRDEHGIDQNIFRNLWRSSIPQKGK
        + +GSVK+ W+P  N+W++ + RPLRDHE + W+++   LP P  +     P+WNLN+N  F  ASVK  I +  +   +    N+++ LW+   P+K K
Subjt:  DNQGSVKDMWDPLINNWNIKLRRPLRDHESHQWNDLVCLLPRPNNSNEADIPIWNLNTNRNFSIASVKNNIFQTHLRDEHGIDQNIFRNLWRSSIPQKGK

Query:  FFIWSLIHKCINTTDMLQRRYPKWLLQPNRCSLCKSESEDINHLFVSCPISISLWSHVDIITGWKNSGSSITSICQNLCSINQKNKKGIITFNSVAAVLW
        FFIW+LIH CINT D LQ+R P W L PN C +C    EDINHLF+ CP S  LWS    +  W ++ + + S+ QN+CS+N +N+KG+ITFN+ A +LW
Subjt:  FFIWSLIHKCINTTDMLQRRYPKWLLQPNRCSLCKSESEDINHLFVSCPISISLWSHVDIITGWKNSGSSITSICQNLCSINQKNKKGIITFNSVAAVLW

Query:  SIWLERNNRIFNNKEKNFCNLWEDIKALVGFWTSRNKLFKNYNASSIALNLNAFI
         IWLERNNRIF  +EK   +LWED  A +G W+ ++KLF NY+  SIALN++AF+
Subjt:  SIWLERNNRIFNNKEKNFCNLWEDIKALVGFWTSRNKLFKNYNASSIALNLNAFI

KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

6.1e-71

46.67

Show/hide

Query:  DNQGSVKDMWDPLINNWNIKLRRPLRDHESHQWNDLVCLLPRPNNSNEADIPIWNLNTNRNFSIASVKNNIFQTHLRDEHGIDQNIFRNLWRSSIPQKGK
        + +GSVKD+W+P + +WNI + RPLRDHE + W+++   LP P        P+W LN+N  F  AS+K ++ +      +    ++++ LW+   P+K K
Subjt:  DNQGSVKDMWDPLINNWNIKLRRPLRDHESHQWNDLVCLLPRPNNSNEADIPIWNLNTNRNFSIASVKNNIFQTHLRDEHGIDQNIFRNLWRSSIPQKGK

Query:  FFIWSLIHKCINTTDMLQRRYPKWLLQPNRCSLCKSESEDINHLFVSCPISISLWSHVDIITGWKNSGSSITSICQNLCSINQKNKKGIITFNSVAAVLW
        FFIW+LIH CINT D LQ+R P W L PN C +C    EDINHLF+ CP S  LWS    +  W ++ + + S+ QN+CS+N K +KG+ITFN++A +LW
Subjt:  FFIWSLIHKCINTTDMLQRRYPKWLLQPNRCSLCKSESEDINHLFVSCPISISLWSHVDIITGWKNSGSSITSICQNLCSINQKNKKGIITFNSVAAVLW

Query:  SIWLERNNRIFNNKEKNFCNLWEDIKALVGFWTSRNKLFKNYNASSIALNLNAFI
         IWLERNNRIF  ++K F +LWEDI A  G W+ ++KLF NY+  SIALN++AF+
Subjt:  SIWLERNNRIFNNKEKNFCNLWEDIKALVGFWTSRNKLFKNYNASSIALNLNAFI

KAA0044451.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

6.3e-60

45.49

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Query:  DNQGSVKDMWDPLINNWNIKLRRPLRDHESHQWNDLVCLLPRPNNSNEADIPIWNLNTNRNFSIASVKNNIFQTHLRDEHGIDQNIFRNLWRSSIPQKGK
        + +GSVKD W+P  N+W++ + RPLRDHE + W+++   LP P  +     P+W LN+N  F  ASVK  + +  +   +    N+++ LW+   P+K K
Subjt:  DNQGSVKDMWDPLINNWNIKLRRPLRDHESHQWNDLVCLLPRPNNSNEADIPIWNLNTNRNFSIASVKNNIFQTHLRDEHGIDQNIFRNLWRSSIPQKGK

Query:  FFIWSLIHKCINTTDMLQRRYPKWLLQPNRCSLCKSESEDINHLFVSCPISISLWSHVDIITGWKNSGSSITSICQNLCSINQKNKKGIITFNSVAAVLW
        FFIW+LIH CINT D LQ+R P W L PN C +C    EDINHLF+ CP S  LWS    +  W  + + + S+ QN+CS+N +N+KG+ITFN+ A +LW
Subjt:  FFIWSLIHKCINTTDMLQRRYPKWLLQPNRCSLCKSESEDINHLFVSCPISISLWSHVDIITGWKNSGSSITSICQNLCSINQKNKKGIITFNSVAAVLW

Query:  SIWLERNNRIFNNKEKNFCNLWEDIKALVGFWT
         IWLERNNRIF  + K+  +LWEDI A  G ++
Subjt:  SIWLERNNRIFNNKEKNFCNLWEDIKALVGFWT

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

6.1e-71

46.67

Show/hide

Query:  DNQGSVKDMWDPLINNWNIKLRRPLRDHESHQWNDLVCLLPRPNNSNEADIPIWNLNTNRNFSIASVKNNIFQTHLRDEHGIDQNIFRNLWRSSIPQKGK
        + +GSVKD+W+P + +WNI + RPLRDHE + W+++   LP P        P+W LN+N  F  AS+K ++ +      +    ++++ LW+   P+K K
Subjt:  DNQGSVKDMWDPLINNWNIKLRRPLRDHESHQWNDLVCLLPRPNNSNEADIPIWNLNTNRNFSIASVKNNIFQTHLRDEHGIDQNIFRNLWRSSIPQKGK

Query:  FFIWSLIHKCINTTDMLQRRYPKWLLQPNRCSLCKSESEDINHLFVSCPISISLWSHVDIITGWKNSGSSITSICQNLCSINQKNKKGIITFNSVAAVLW
        FFIW+LIH CINT D LQ+R P W L PN C +C    EDINHLF+ CP S  LWS    +  W ++ + + S+ QN+CS+N K +KG+ITFN++A +LW
Subjt:  FFIWSLIHKCINTTDMLQRRYPKWLLQPNRCSLCKSESEDINHLFVSCPISISLWSHVDIITGWKNSGSSITSICQNLCSINQKNKKGIITFNSVAAVLW

Query:  SIWLERNNRIFNNKEKNFCNLWEDIKALVGFWTSRNKLFKNYNASSIALNLNAFI
         IWLERNNRIF  ++K F +LWEDI A  G W+ ++KLF NY+  SIALN++AF+
Subjt:  SIWLERNNRIFNNKEKNFCNLWEDIKALVGFWTSRNKLFKNYNASSIALNLNAFI

TYK29578.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

6.3e-60

45.49

Show/hide

Query:  DNQGSVKDMWDPLINNWNIKLRRPLRDHESHQWNDLVCLLPRPNNSNEADIPIWNLNTNRNFSIASVKNNIFQTHLRDEHGIDQNIFRNLWRSSIPQKGK
        + +GSVKD W+P  N+W++ + RPLRDHE + W+++   LP P  +     P+W LN+N  F  ASVK  + +  +   +    N+++ LW+   P+K K
Subjt:  DNQGSVKDMWDPLINNWNIKLRRPLRDHESHQWNDLVCLLPRPNNSNEADIPIWNLNTNRNFSIASVKNNIFQTHLRDEHGIDQNIFRNLWRSSIPQKGK

Query:  FFIWSLIHKCINTTDMLQRRYPKWLLQPNRCSLCKSESEDINHLFVSCPISISLWSHVDIITGWKNSGSSITSICQNLCSINQKNKKGIITFNSVAAVLW
        FFIW+LIH CINT D LQ+R P W L PN C +C    EDINHLF+ CP S  LWS    +  W  + + + S+ QN+CS+N +N+KG+ITFN+ A +LW
Subjt:  FFIWSLIHKCINTTDMLQRRYPKWLLQPNRCSLCKSESEDINHLFVSCPISISLWSHVDIITGWKNSGSSITSICQNLCSINQKNKKGIITFNSVAAVLW

Query:  SIWLERNNRIFNNKEKNFCNLWEDIKALVGFWT
         IWLERNNRIF  + K+  +LWEDI A  G ++
Subjt:  SIWLERNNRIFNNKEKNFCNLWEDIKALVGFWT

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein

2.5e-70

47.06

Show/hide

Query:  DNQGSVKDMWDPLINNWNIKLRRPLRDHESHQWNDLVCLLPRPNNSNEADIPIWNLNTNRNFSIASVKNNIFQTHLRDEHGIDQNIFRNLWRSSIPQKGK
        + +GSVK+ W+P  N+W++ + RPLRDHE + W+++   LP P  +     P+WNLN+N  F  ASVK  I +  +   +    N+++ LW+   P+K K
Subjt:  DNQGSVKDMWDPLINNWNIKLRRPLRDHESHQWNDLVCLLPRPNNSNEADIPIWNLNTNRNFSIASVKNNIFQTHLRDEHGIDQNIFRNLWRSSIPQKGK

Query:  FFIWSLIHKCINTTDMLQRRYPKWLLQPNRCSLCKSESEDINHLFVSCPISISLWSHVDIITGWKNSGSSITSICQNLCSINQKNKKGIITFNSVAAVLW
        FFIW+LIH CINT D LQ+R P W L PN C +C    EDINHLF+ CP S  LWS    +  W ++ + + S+ QN+CS+N +N+KG+ITFN+ A +LW
Subjt:  FFIWSLIHKCINTTDMLQRRYPKWLLQPNRCSLCKSESEDINHLFVSCPISISLWSHVDIITGWKNSGSSITSICQNLCSINQKNKKGIITFNSVAAVLW

Query:  SIWLERNNRIFNNKEKNFCNLWEDIKALVGFWTSRNKLFKNYNASSIALNLNAFI
         IWLERNNRIF  +EK   +LWED  A +G W+ ++KLF NY+  SIALN++AF+
Subjt:  SIWLERNNRIFNNKEKNFCNLWEDIKALVGFWTSRNKLFKNYNASSIALNLNAFI

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein

3.0e-71

46.67

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Query:  DNQGSVKDMWDPLINNWNIKLRRPLRDHESHQWNDLVCLLPRPNNSNEADIPIWNLNTNRNFSIASVKNNIFQTHLRDEHGIDQNIFRNLWRSSIPQKGK
        + +GSVKD+W+P + +WNI + RPLRDHE + W+++   LP P        P+W LN+N  F  AS+K ++ +      +    ++++ LW+   P+K K
Subjt:  DNQGSVKDMWDPLINNWNIKLRRPLRDHESHQWNDLVCLLPRPNNSNEADIPIWNLNTNRNFSIASVKNNIFQTHLRDEHGIDQNIFRNLWRSSIPQKGK

Query:  FFIWSLIHKCINTTDMLQRRYPKWLLQPNRCSLCKSESEDINHLFVSCPISISLWSHVDIITGWKNSGSSITSICQNLCSINQKNKKGIITFNSVAAVLW
        FFIW+LIH CINT D LQ+R P W L PN C +C    EDINHLF+ CP S  LWS    +  W ++ + + S+ QN+CS+N K +KG+ITFN++A +LW
Subjt:  FFIWSLIHKCINTTDMLQRRYPKWLLQPNRCSLCKSESEDINHLFVSCPISISLWSHVDIITGWKNSGSSITSICQNLCSINQKNKKGIITFNSVAAVLW

Query:  SIWLERNNRIFNNKEKNFCNLWEDIKALVGFWTSRNKLFKNYNASSIALNLNAFI
         IWLERNNRIF  ++K F +LWEDI A  G W+ ++KLF NY+  SIALN++AF+
Subjt:  SIWLERNNRIFNNKEKNFCNLWEDIKALVGFWTSRNKLFKNYNASSIALNLNAFI

A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein

3.0e-71

46.67

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Query:  DNQGSVKDMWDPLINNWNIKLRRPLRDHESHQWNDLVCLLPRPNNSNEADIPIWNLNTNRNFSIASVKNNIFQTHLRDEHGIDQNIFRNLWRSSIPQKGK
        + +GSVKD+W+P + +WNI + RPLRDHE + W+++   LP P        P+W LN+N  F  AS+K ++ +      +    ++++ LW+   P+K K
Subjt:  DNQGSVKDMWDPLINNWNIKLRRPLRDHESHQWNDLVCLLPRPNNSNEADIPIWNLNTNRNFSIASVKNNIFQTHLRDEHGIDQNIFRNLWRSSIPQKGK

Query:  FFIWSLIHKCINTTDMLQRRYPKWLLQPNRCSLCKSESEDINHLFVSCPISISLWSHVDIITGWKNSGSSITSICQNLCSINQKNKKGIITFNSVAAVLW
        FFIW+LIH CINT D LQ+R P W L PN C +C    EDINHLF+ CP S  LWS    +  W ++ + + S+ QN+CS+N K +KG+ITFN++A +LW
Subjt:  FFIWSLIHKCINTTDMLQRRYPKWLLQPNRCSLCKSESEDINHLFVSCPISISLWSHVDIITGWKNSGSSITSICQNLCSINQKNKKGIITFNSVAAVLW

Query:  SIWLERNNRIFNNKEKNFCNLWEDIKALVGFWTSRNKLFKNYNASSIALNLNAFI
         IWLERNNRIF  ++K F +LWEDI A  G W+ ++KLF NY+  SIALN++AF+
Subjt:  SIWLERNNRIFNNKEKNFCNLWEDIKALVGFWTSRNKLFKNYNASSIALNLNAFI

A0A5A7TSA7 LINE-1 retrotransposable element ORF2 protein

3.1e-60

45.49

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Query:  DNQGSVKDMWDPLINNWNIKLRRPLRDHESHQWNDLVCLLPRPNNSNEADIPIWNLNTNRNFSIASVKNNIFQTHLRDEHGIDQNIFRNLWRSSIPQKGK
        + +GSVKD W+P  N+W++ + RPLRDHE + W+++   LP P  +     P+W LN+N  F  ASVK  + +  +   +    N+++ LW+   P+K K
Subjt:  DNQGSVKDMWDPLINNWNIKLRRPLRDHESHQWNDLVCLLPRPNNSNEADIPIWNLNTNRNFSIASVKNNIFQTHLRDEHGIDQNIFRNLWRSSIPQKGK

Query:  FFIWSLIHKCINTTDMLQRRYPKWLLQPNRCSLCKSESEDINHLFVSCPISISLWSHVDIITGWKNSGSSITSICQNLCSINQKNKKGIITFNSVAAVLW
        FFIW+LIH CINT D LQ+R P W L PN C +C    EDINHLF+ CP S  LWS    +  W  + + + S+ QN+CS+N +N+KG+ITFN+ A +LW
Subjt:  FFIWSLIHKCINTTDMLQRRYPKWLLQPNRCSLCKSESEDINHLFVSCPISISLWSHVDIITGWKNSGSSITSICQNLCSINQKNKKGIITFNSVAAVLW

Query:  SIWLERNNRIFNNKEKNFCNLWEDIKALVGFWT
         IWLERNNRIF  + K+  +LWEDI A  G ++
Subjt:  SIWLERNNRIFNNKEKNFCNLWEDIKALVGFWT

A0A5D3E1E3 LINE-1 retrotransposable element ORF2 protein

3.1e-60

45.49

Show/hide

Query:  DNQGSVKDMWDPLINNWNIKLRRPLRDHESHQWNDLVCLLPRPNNSNEADIPIWNLNTNRNFSIASVKNNIFQTHLRDEHGIDQNIFRNLWRSSIPQKGK
        + +GSVKD W+P  N+W++ + RPLRDHE + W+++   LP P  +     P+W LN+N  F  ASVK  + +  +   +    N+++ LW+   P+K K
Subjt:  DNQGSVKDMWDPLINNWNIKLRRPLRDHESHQWNDLVCLLPRPNNSNEADIPIWNLNTNRNFSIASVKNNIFQTHLRDEHGIDQNIFRNLWRSSIPQKGK

Query:  FFIWSLIHKCINTTDMLQRRYPKWLLQPNRCSLCKSESEDINHLFVSCPISISLWSHVDIITGWKNSGSSITSICQNLCSINQKNKKGIITFNSVAAVLW
        FFIW+LIH CINT D LQ+R P W L PN C +C    EDINHLF+ CP S  LWS    +  W  + + + S+ QN+CS+N +N+KG+ITFN+ A +LW
Subjt:  FFIWSLIHKCINTTDMLQRRYPKWLLQPNRCSLCKSESEDINHLFVSCPISISLWSHVDIITGWKNSGSSITSICQNLCSINQKNKKGIITFNSVAAVLW

Query:  SIWLERNNRIFNNKEKNFCNLWEDIKALVGFWT
         IWLERNNRIF  + K+  +LWEDI A  G ++
Subjt:  SIWLERNNRIFNNKEKNFCNLWEDIKALVGFWT

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G25270.1 Ribonuclease H-like superfamily protein

4.2e-09

25.16

Show/hide

Query:  LWRSSIPQKGKFFIWSLIHKCINTTDMLQRRYPKWLLQPNRCSLCKSESEDINHLFVSCPISISLWSHVDI-ITGWKNSGSSITSICQNLCSINQKNKKG
        +W+     K K F+W L+   + T D L+RR+   +    +C  C  E E   HLF  C  +  +W    I     + +G ++ +  + L S    N++ 
Subjt:  LWRSSIPQKGKFFIWSLIHKCINTTDMLQRRYPKWLLQPNRCSLCKSESEDINHLFVSCPISISLWSHVDI-ITGWKNSGSSITSICQNLCSINQKNKKG

Query:  IITFNSVAAVLWSIWLERNNRIFNNKEKNFCNLWEDIKALVGFWTSRNKLFKNYN
         + FN    +LW +W  RN  +F  K  ++ N  +  +  V  W   N   ++ N
Subjt:  IITFNSVAAVLWSIWLERNNRIFNNKEKNFCNLWEDIKALVGFWTSRNKLFKNYN

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGACAATCAAGGTAGTGTCAAAGACATGTGGGATCCTCTTATAAACAACTGGAACATCAAGCTGAGAAGGCCTTTGAGGGACCATGAAAGCCATCAGTGGAATGACCT
TGTTTGTCTCCTTCCCAGGCCAAACAACAGCAATGAAGCTGACATCCCTATATGGAATCTCAATACAAATCGAAACTTTAGCATTGCATCAGTTAAAAACAACATCTTCC
AAACTCATCTTAGGGATGAACATGGTATTGATCAAAATATCTTCAGAAACTTATGGAGATCCAGTATACCACAAAAAGGAAAATTCTTCATATGGTCTCTCATACACAAA
TGCATAAACACTACTGATATGCTTCAAAGAAGATATCCAAAATGGCTCCTTCAACCAAATAGATGCTCTCTTTGCAAGTCAGAATCTGAAGATATAAATCACTTATTTGT
CTCCTGCCCCATCTCTATTTCTCTTTGGTCTCATGTGGATATAATTACTGGCTGGAAAAATTCTGGAAGCTCCATTACTTCTATTTGCCAAAATCTTTGCAGCATCAATC
AAAAGAACAAGAAAGGTATCATCACTTTCAATTCTGTGGCTGCTGTTCTTTGGTCTATTTGGCTTGAAAGAAACAACAGAATCTTCAACAACAAAGAGAAAAACTTCTGC
AACCTTTGGGAGGACATCAAAGCCTTAGTTGGTTTTTGGACAAGCAGAAACAAGTTGTTCAAAAACTATAATGCTAGTTCTATTGCACTAAATCTCAATGCTTTCATCGG
GAGTGATGAAGGTGCTAAGGAGGTGTCCACCTAG

mRNA sequence

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Protein sequence

Show/hide protein sequence

MDNQGSVKDMWDPLINNWNIKLRRPLRDHESHQWNDLVCLLPRPNNSNEADIPIWNLNTNRNFSIASVKNNIFQTHLRDEHGIDQNIFRNLWRSSIPQKGKFFIWSLIHK
CINTTDMLQRRYPKWLLQPNRCSLCKSESEDINHLFVSCPISISLWSHVDIITGWKNSGSSITSICQNLCSINQKNKKGIITFNSVAAVLWSIWLERNNRIFNNKEKNFC
NLWEDIKALVGFWTSRNKLFKNYNASSIALNLNAFIGSDEGAKEVST

PI0025329 (gene) of Melon (PI 482460) v1 genome