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PI0025337 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0025337
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr05:13334026..13335815
RNA-Seq ExpressionPI0025337
SyntenyPI0025337
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]1.6e-6682.24Show/hide
Query:  MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIENINVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQGMNLEDIVKALATNTFSFQ
        MTTLLTSFVQG PLKV KCGVC LVGHPNDKCP++IE++N++RKYDP+GNTYNSGWRDNPNLRWGNDNQK TQA  +SSNQG NLEDI+KALATNT SFQ
Subjt:  MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIENINVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQGMNLEDIVKALATNTFSFQ

Query:  QEMKQQMTQLTTAICKLEGKGKLPTQPDHANVSVISLRSGKILETPSSEEKK
        QEMKQQMTQLTTAI K++GKGKLP QPD+ANVS ISLRSGKIL+TP+++EKK
Subjt:  QEMKQQMTQLTTAICKLEGKGKLPTQPDHANVSVISLRSGKILETPSSEEKK

KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.6e-6681.58Show/hide
Query:  MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIENINVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQGMNLEDIVKALATNTFSFQ
        MTTLLTSFVQG PLKV KCGVCGLVGHPNDKCP++IE++N++RKYDPHGNTYNSGWRDNPNLRWGNDNQK TQA S+SSNQG NLEDI+KALATNT SFQ
Subjt:  MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIENINVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQGMNLEDIVKALATNTFSFQ

Query:  QEMKQQMTQLTTAICKLEGKGKLPTQPDHANVSVISLRSGKILETPSSEEKK
        QEMKQQMTQLTTAI K++GKGKL  Q ++ANVS +SLRSGKIL+TP+++EKK
Subjt:  QEMKQQMTQLTTAICKLEGKGKLPTQPDHANVSVISLRSGKILETPSSEEKK

KAA0051761.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.0e-6581.58Show/hide
Query:  MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIENINVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQGMNLEDIVKALATNTFSFQ
        MT LLTSFVQG PLKV KCGVCGLVGHPNDKCP++IE++N+++KYDPHGNTYNSGWRDNPNLRWGNDNQK TQA  +SSNQG NLEDI+KALATNT SFQ
Subjt:  MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIENINVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQGMNLEDIVKALATNTFSFQ

Query:  QEMKQQMTQLTTAICKLEGKGKLPTQPDHANVSVISLRSGKILETPSSEEKK
        QEMKQQMTQLTT I K++GKGKL  QPDHANVSVISLRS KIL+TP+++EKK
Subjt:  QEMKQQMTQLTTAICKLEGKGKLPTQPDHANVSVISLRSGKILETPSSEEKK

TYK10613.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.4e-6580.92Show/hide
Query:  MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIENINVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQGMNLEDIVKALATNTFSFQ
        MTTLLTSFVQG P KV KCGVCGLVGHPNDKCP++IE+IN++R+YDPHGNTYN GWRD PNLRWGND Q  TQA S+SSNQG NLEDI+KAL TNT SFQ
Subjt:  MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIENINVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQGMNLEDIVKALATNTFSFQ

Query:  QEMKQQMTQLTTAICKLEGKGKLPTQPDHANVSVISLRSGKILETPSSEEKK
        QEMKQQMTQLTTAI K++GKGKLP QPDHANVS ISLRSGKIL+TP+++EKK
Subjt:  QEMKQQMTQLTTAICKLEGKGKLPTQPDHANVSVISLRSGKILETPSSEEKK

XP_016902871.1 PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo]1.0e-6581.58Show/hide
Query:  MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIENINVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQGMNLEDIVKALATNTFSFQ
        MT LLTSFVQG PLKV KCGVCGLVGHPNDKCP++IE++N+++KYDPHGNTYNSGWRDNPNLRWGNDNQK TQA  +SSNQG NLEDI+KALATNT SFQ
Subjt:  MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIENINVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQGMNLEDIVKALATNTFSFQ

Query:  QEMKQQMTQLTTAICKLEGKGKLPTQPDHANVSVISLRSGKILETPSSEEKK
        QEMKQQMTQLTT I K++GKGKL  QPDHANVSVISLRS KIL+TP+++EKK
Subjt:  QEMKQQMTQLTTAICKLEGKGKLPTQPDHANVSVISLRSGKILETPSSEEKK

TrEMBL top hitse value%identityAlignment
A0A1S4E3R2 uncharacterized protein LOC1079919105.1e-6681.58Show/hide
Query:  MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIENINVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQGMNLEDIVKALATNTFSFQ
        MT LLTSFVQG PLKV KCGVCGLVGHPNDKCP++IE++N+++KYDPHGNTYNSGWRDNPNLRWGNDNQK TQA  +SSNQG NLEDI+KALATNT SFQ
Subjt:  MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIENINVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQGMNLEDIVKALATNTFSFQ

Query:  QEMKQQMTQLTTAICKLEGKGKLPTQPDHANVSVISLRSGKILETPSSEEKK
        QEMKQQMTQLTT I K++GKGKL  QPDHANVSVISLRS KIL+TP+++EKK
Subjt:  QEMKQQMTQLTTAICKLEGKGKLPTQPDHANVSVISLRSGKILETPSSEEKK

A0A5D3CFE7 Retrotransposon gag protein6.6e-6680.92Show/hide
Query:  MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIENINVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQGMNLEDIVKALATNTFSFQ
        MTTLLTSFVQG P KV KCGVCGLVGHPNDKCP++IE+IN++R+YDPHGNTYN GWRD PNLRWGND Q  TQA S+SSNQG NLEDI+KAL TNT SFQ
Subjt:  MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIENINVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQGMNLEDIVKALATNTFSFQ

Query:  QEMKQQMTQLTTAICKLEGKGKLPTQPDHANVSVISLRSGKILETPSSEEKK
        QEMKQQMTQLTTAI K++GKGKLP QPDHANVS ISLRSGKIL+TP+++EKK
Subjt:  QEMKQQMTQLTTAICKLEGKGKLPTQPDHANVSVISLRSGKILETPSSEEKK

A0A5D3CRR8 Retrotransposon gag protein1.7e-6681.58Show/hide
Query:  MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIENINVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQGMNLEDIVKALATNTFSFQ
        MTTLLTSFVQG PLKV KCGVCGLVGHPNDKCP++IE++N++RKYDPHGNTYNSGWRDNPNLRWGNDNQK TQA S+SSNQG NLEDI+KALATNT SFQ
Subjt:  MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIENINVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQGMNLEDIVKALATNTFSFQ

Query:  QEMKQQMTQLTTAICKLEGKGKLPTQPDHANVSVISLRSGKILETPSSEEKK
        QEMKQQMTQLTTAI K++GKGKL  Q ++ANVS +SLRSGKIL+TP+++EKK
Subjt:  QEMKQQMTQLTTAICKLEGKGKLPTQPDHANVSVISLRSGKILETPSSEEKK

A0A5D3DCG3 Retrotransposon gag protein5.1e-6681.58Show/hide
Query:  MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIENINVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQGMNLEDIVKALATNTFSFQ
        MT LLTSFVQG PLKV KCGVCGLVGHPNDKCP++IE++N+++KYDPHGNTYNSGWRDNPNLRWGNDNQK TQA  +SSNQG NLEDI+KALATNT SFQ
Subjt:  MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIENINVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQGMNLEDIVKALATNTFSFQ

Query:  QEMKQQMTQLTTAICKLEGKGKLPTQPDHANVSVISLRSGKILETPSSEEKK
        QEMKQQMTQLTT I K++GKGKL  QPDHANVSVISLRS KIL+TP+++EKK
Subjt:  QEMKQQMTQLTTAICKLEGKGKLPTQPDHANVSVISLRSGKILETPSSEEKK

E5GBZ4 Retrotransposon gag protein7.8e-6782.24Show/hide
Query:  MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIENINVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQGMNLEDIVKALATNTFSFQ
        MTTLLTSFVQG PLKV KCGVC LVGHPNDKCP++IE++N++RKYDP+GNTYNSGWRDNPNLRWGNDNQK TQA  +SSNQG NLEDI+KALATNT SFQ
Subjt:  MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIENINVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQGMNLEDIVKALATNTFSFQ

Query:  QEMKQQMTQLTTAICKLEGKGKLPTQPDHANVSVISLRSGKILETPSSEEKK
        QEMKQQMTQLTTAI K++GKGKLP QPD+ANVS ISLRSGKIL+TP+++EKK
Subjt:  QEMKQQMTQLTTAICKLEGKGKLPTQPDHANVSVISLRSGKILETPSSEEKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTACTCTTCTTACTTCTTTTGTGCAAGGTGGCCCTCTAAAAGTTGCCAAGTGTGGAGTTTGTGGCTTAGTTGGTCATCCAAATGACAAGTGCCCTGACTTGATTGA
GAATATAAATGTCATTCGTAAGTACGATCCCCATGGCAATACATACAATTCGGGATGGAGAGACAACCCAAATTTGAGATGGGGAAATGACAACCAAAAGCCTACCCAAG
CAACATCCTCCTCTTCAAACCAAGGTATGAATCTTGAAGACATAGTCAAAGCTTTAGCTACTAACACTTTTTCTTTTCAACAAGAGATGAAACAACAAATGACTCAACTC
ACTACCGCTATATGTAAGTTGGAAGGAAAAGGTAAGCTTCCAACCCAACCGGATCATGCAAATGTGAGTGTCATCTCACTAAGAAGTGGTAAGATTCTTGAAACCCCTTC
TAGTGAAGAAAAAAAGGGCAATCCACTTGAAGAAATCAAGGAATCATAA
mRNA sequenceShow/hide mRNA sequence
ATGACTACTCTTCTTACTTCTTTTGTGCAAGGTGGCCCTCTAAAAGTTGCCAAGTGTGGAGTTTGTGGCTTAGTTGGTCATCCAAATGACAAGTGCCCTGACTTGATTGA
GAATATAAATGTCATTCGTAAGTACGATCCCCATGGCAATACATACAATTCGGGATGGAGAGACAACCCAAATTTGAGATGGGGAAATGACAACCAAAAGCCTACCCAAG
CAACATCCTCCTCTTCAAACCAAGGTATGAATCTTGAAGACATAGTCAAAGCTTTAGCTACTAACACTTTTTCTTTTCAACAAGAGATGAAACAACAAATGACTCAACTC
ACTACCGCTATATGTAAGTTGGAAGGAAAAGGTAAGCTTCCAACCCAACCGGATCATGCAAATGTGAGTGTCATCTCACTAAGAAGTGGTAAGATTCTTGAAACCCCTTC
TAGTGAAGAAAAAAAGGGCAATCCACTTGAAGAAATCAAGGAATCATAA
Protein sequenceShow/hide protein sequence
MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIENINVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQGMNLEDIVKALATNTFSFQQEMKQQMTQL
TTAICKLEGKGKLPTQPDHANVSVISLRSGKILETPSSEEKKGNPLEEIKES