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PI0025360 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0025360
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr09:15932549..15933394
RNA-Seq ExpressionPI0025360
SyntenyPI0025360
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR024752 - Myb/SANT-like domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33917.1 hypothetical protein [Cucumis melo subsp. melo]1.3e-4451.05Show/hide
Query:  MTTSSRAPKHLWTKEEEATLVECLVELVSVGGWRSDNETFRLGYHSHLQKMMVERMPGHNIQTSTIDCWIKTLKRTFQAIAEMRGPSCSEFSWNDELKCI
        M +SSR  KHLW KE++ATLVECLV+LV+  GW SDN TF LGY+S L +MM ++M G NIQ +TID  IKT+++TF AI+E+RGPSCS FSWNDEL  I
Subjt:  MTTSSRAPKHLWTKEEEATLVECLVELVSVGGWRSDNETFRLGYHSHLQKMMVERMPGHNIQTSTIDCWIKTLKRTFQAIAEMRGPSCSEFSWNDELKCI

Query:  FAEKDLYDNWVK--------------------------VEEEAWKPEIRNGKIIRNAMEYANDQLKAIAEWPNVQRQDASATHAEVIRQL
          EKD++DNW+K                           + +     I    II+NAMEYANDQL  I +WP ++ QDAS T  EV+RQL
Subjt:  FAEKDLYDNWVK--------------------------VEEEAWKPEIRNGKIIRNAMEYANDQLKAIAEWPNVQRQDASATHAEVIRQL

KAA0059630.1 retrotransposon protein [Cucumis melo var. makuwa]1.5e-4357.79Show/hide
Query:  MTTSSRAPKHLWTKEEEATLVECLVELVSVGGWRSDNETFRLGYHSHLQKMMVERMPGHNIQ-TSTIDCWIKTLKRTFQAIAEMRGPSCSEFSWNDELKC
        M+TS+RAP+H+WTKEEE TLVE L+ELVS+GGW+SDN TFR GY + L +MM E++PG  ++ T+ IDC IKTLKRTFQAIAEMRGP+CS+F WND+ KC
Subjt:  MTTSSRAPKHLWTKEEEATLVECLVELVSVGGWRSDNETFRLGYHSHLQKMMVERMPGHNIQ-TSTIDCWIKTLKRTFQAIAEMRGPSCSEFSWNDELKC

Query:  IFAEKDLYDNWVKVEEEAWKPEIRNG-------KIIRNAMEYANDQLKAIAEWP
        I AEK+L+DNWV+V   +   + + G       + I  A++  N QL+ IAEWP
Subjt:  IFAEKDLYDNWVKVEEEAWKPEIRNG-------KIIRNAMEYANDQLKAIAEWP

KAA0060635.1 retrotransposon protein [Cucumis melo var. makuwa]2.5e-4350Show/hide
Query:  MTTSSRAPKHLWTKEEEATLVECLVELVSVGGWRSDNETFRLGYHSHLQKMMVERMPGHNIQTSTIDCWIKTLKRTFQAIAEMRGPSCSEFSWNDELKCI
        M +SSR  KHLW KE++ATLVECLV+LV+  GW SDN TF LGY+S L +MM ++M G NIQ +TID  IKT+++TF AI+E+RGPSCS FSWNDEL  I
Subjt:  MTTSSRAPKHLWTKEEEATLVECLVELVSVGGWRSDNETFRLGYHSHLQKMMVERMPGHNIQTSTIDCWIKTLKRTFQAIAEMRGPSCSEFSWNDELKCI

Query:  FAEKDLYDNWVK--------------------------VEEEAWKPEIRNGKIIRNAMEYANDQLKAIAEWPNVQRQDASATHAEVIRQL
          EKD++DNW+K                          ++ +     I    II+NAMEYAN QL  I +W  ++ QDAS T  EV+RQL
Subjt:  FAEKDLYDNWVK--------------------------VEEEAWKPEIRNGKIIRNAMEYANDQLKAIAEWPNVQRQDASATHAEVIRQL

TYK02236.1 retrotransposon protein [Cucumis melo var. makuwa]2.5e-4350Show/hide
Query:  MTTSSRAPKHLWTKEEEATLVECLVELVSVGGWRSDNETFRLGYHSHLQKMMVERMPGHNIQTSTIDCWIKTLKRTFQAIAEMRGPSCSEFSWNDELKCI
        M +SSR  KHLW KE++ATLVECLV+LV+  GW SDN TF LGY+S L +MM ++M G NIQ +TID  IKT+++TF AI+E+RGPSCS FSWNDEL  I
Subjt:  MTTSSRAPKHLWTKEEEATLVECLVELVSVGGWRSDNETFRLGYHSHLQKMMVERMPGHNIQTSTIDCWIKTLKRTFQAIAEMRGPSCSEFSWNDELKCI

Query:  FAEKDLYDNWVK--------------------------VEEEAWKPEIRNGKIIRNAMEYANDQLKAIAEWPNVQRQDASATHAEVIRQL
          EKD++DNW+K                          ++ +     I    II+NAMEYAN QL  I +W  ++ QDAS T  EV+RQL
Subjt:  FAEKDLYDNWVK--------------------------VEEEAWKPEIRNGKIIRNAMEYANDQLKAIAEWPNVQRQDASATHAEVIRQL

TYK10662.1 retrotransposon protein [Cucumis melo var. makuwa]4.3e-4347.06Show/hide
Query:  MTTSSRAPKHLWTKEEEATLVECLVELVSVGGWRSDNETFRLGYHSHLQKMMVERMPGHNIQTSTIDCWIKTLKRTFQAIAEMRGPSCSEFSWNDELKCI
        MT+SSR PKH WTKEEEA LVECLVELV+ GGWRSDN TFR GY + L +MM  ++PG NI  STID  IK +KR F A+AEMRGP+CS F WNDE KCI
Subjt:  MTTSSRAPKHLWTKEEEATLVECLVELVSVGGWRSDNETFRLGYHSHLQKMMVERMPGHNIQTSTIDCWIKTLKRTFQAIAEMRGPSCSEFSWNDELKCI

Query:  FAEKDLYDNW-------------VKVEE----------------------------EAWKPEIRN----------------GKIIRNAMEYANDQLKAIA
         AEK+++D+W             V  +E                             A   E RN                G I+R A+EY N+QL  IA
Subjt:  FAEKDLYDNW-------------VKVEE----------------------------EAWKPEIRN----------------GKIIRNAMEYANDQLKAIA

Query:  EWPNVQRQDASATHAEVIRQL
        EWP +QRQDA+ T  E++RQL
Subjt:  EWPNVQRQDASATHAEVIRQL

TrEMBL top hitse value%identityAlignment
A0A5A7UWW9 Retrotransposon protein7.2e-4457.79Show/hide
Query:  MTTSSRAPKHLWTKEEEATLVECLVELVSVGGWRSDNETFRLGYHSHLQKMMVERMPGHNIQ-TSTIDCWIKTLKRTFQAIAEMRGPSCSEFSWNDELKC
        M+TS+RAP+H+WTKEEE TLVE L+ELVS+GGW+SDN TFR GY + L +MM E++PG  ++ T+ IDC IKTLKRTFQAIAEMRGP+CS+F WND+ KC
Subjt:  MTTSSRAPKHLWTKEEEATLVECLVELVSVGGWRSDNETFRLGYHSHLQKMMVERMPGHNIQ-TSTIDCWIKTLKRTFQAIAEMRGPSCSEFSWNDELKC

Query:  IFAEKDLYDNWVKVEEEAWKPEIRNG-------KIIRNAMEYANDQLKAIAEWP
        I AEK+L+DNWV+V   +   + + G       + I  A++  N QL+ IAEWP
Subjt:  IFAEKDLYDNWVKVEEEAWKPEIRNG-------KIIRNAMEYANDQLKAIAEWP

A0A5A7V442 Retrotransposon protein1.2e-4350Show/hide
Query:  MTTSSRAPKHLWTKEEEATLVECLVELVSVGGWRSDNETFRLGYHSHLQKMMVERMPGHNIQTSTIDCWIKTLKRTFQAIAEMRGPSCSEFSWNDELKCI
        M +SSR  KHLW KE++ATLVECLV+LV+  GW SDN TF LGY+S L +MM ++M G NIQ +TID  IKT+++TF AI+E+RGPSCS FSWNDEL  I
Subjt:  MTTSSRAPKHLWTKEEEATLVECLVELVSVGGWRSDNETFRLGYHSHLQKMMVERMPGHNIQTSTIDCWIKTLKRTFQAIAEMRGPSCSEFSWNDELKCI

Query:  FAEKDLYDNWVK--------------------------VEEEAWKPEIRNGKIIRNAMEYANDQLKAIAEWPNVQRQDASATHAEVIRQL
          EKD++DNW+K                          ++ +     I    II+NAMEYAN QL  I +W  ++ QDAS T  EV+RQL
Subjt:  FAEKDLYDNWVK--------------------------VEEEAWKPEIRNGKIIRNAMEYANDQLKAIAEWPNVQRQDASATHAEVIRQL

A0A5D3BVH6 Retrotransposon protein1.2e-4350Show/hide
Query:  MTTSSRAPKHLWTKEEEATLVECLVELVSVGGWRSDNETFRLGYHSHLQKMMVERMPGHNIQTSTIDCWIKTLKRTFQAIAEMRGPSCSEFSWNDELKCI
        M +SSR  KHLW KE++ATLVECLV+LV+  GW SDN TF LGY+S L +MM ++M G NIQ +TID  IKT+++TF AI+E+RGPSCS FSWNDEL  I
Subjt:  MTTSSRAPKHLWTKEEEATLVECLVELVSVGGWRSDNETFRLGYHSHLQKMMVERMPGHNIQTSTIDCWIKTLKRTFQAIAEMRGPSCSEFSWNDELKCI

Query:  FAEKDLYDNWVK--------------------------VEEEAWKPEIRNGKIIRNAMEYANDQLKAIAEWPNVQRQDASATHAEVIRQL
          EKD++DNW+K                          ++ +     I    II+NAMEYAN QL  I +W  ++ QDAS T  EV+RQL
Subjt:  FAEKDLYDNWVK--------------------------VEEEAWKPEIRNGKIIRNAMEYANDQLKAIAEWPNVQRQDASATHAEVIRQL

A0A5D3CHB8 Retrotransposon protein2.1e-4347.06Show/hide
Query:  MTTSSRAPKHLWTKEEEATLVECLVELVSVGGWRSDNETFRLGYHSHLQKMMVERMPGHNIQTSTIDCWIKTLKRTFQAIAEMRGPSCSEFSWNDELKCI
        MT+SSR PKH WTKEEEA LVECLVELV+ GGWRSDN TFR GY + L +MM  ++PG NI  STID  IK +KR F A+AEMRGP+CS F WNDE KCI
Subjt:  MTTSSRAPKHLWTKEEEATLVECLVELVSVGGWRSDNETFRLGYHSHLQKMMVERMPGHNIQTSTIDCWIKTLKRTFQAIAEMRGPSCSEFSWNDELKCI

Query:  FAEKDLYDNW-------------VKVEE----------------------------EAWKPEIRN----------------GKIIRNAMEYANDQLKAIA
         AEK+++D+W             V  +E                             A   E RN                G I+R A+EY N+QL  IA
Subjt:  FAEKDLYDNW-------------VKVEE----------------------------EAWKPEIRN----------------GKIIRNAMEYANDQLKAIA

Query:  EWPNVQRQDASATHAEVIRQL
        EWP +QRQDA+ T  E++RQL
Subjt:  EWPNVQRQDASATHAEVIRQL

E5GBS5 Uncharacterized protein6.5e-4551.05Show/hide
Query:  MTTSSRAPKHLWTKEEEATLVECLVELVSVGGWRSDNETFRLGYHSHLQKMMVERMPGHNIQTSTIDCWIKTLKRTFQAIAEMRGPSCSEFSWNDELKCI
        M +SSR  KHLW KE++ATLVECLV+LV+  GW SDN TF LGY+S L +MM ++M G NIQ +TID  IKT+++TF AI+E+RGPSCS FSWNDEL  I
Subjt:  MTTSSRAPKHLWTKEEEATLVECLVELVSVGGWRSDNETFRLGYHSHLQKMMVERMPGHNIQTSTIDCWIKTLKRTFQAIAEMRGPSCSEFSWNDELKCI

Query:  FAEKDLYDNWVK--------------------------VEEEAWKPEIRNGKIIRNAMEYANDQLKAIAEWPNVQRQDASATHAEVIRQL
          EKD++DNW+K                           + +     I    II+NAMEYANDQL  I +WP ++ QDAS T  EV+RQL
Subjt:  FAEKDLYDNWVK--------------------------VEEEAWKPEIRNGKIIRNAMEYANDQLKAIAEWPNVQRQDASATHAEVIRQL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAACTTCTTCAAGGGCCCCAAAGCACCTATGGACGAAAGAGGAGGAGGCCACCCTCGTTGAATGTCTAGTAGAGTTGGTATCCGTCGGCGGCTGGAGGTCGGACAA
CGAGACGTTTAGACTCGGTTATCATAGTCATCTACAGAAAATGATGGTTGAACGAATGCCGGGACATAACATACAGACTTCGACCATTGATTGTTGGATAAAGACGCTTA
AAAGAACGTTCCAAGCTATAGCTGAAATGCGGGGTCCATCGTGTAGTGAGTTCAGTTGGAACGATGAGCTCAAATGCATATTTGCCGAGAAGGACTTGTATGACAATTGG
GTGAAGGTCGAAGAGGAAGCATGGAAGCCAGAAATTAGAAACGGCAAAATCATTCGTAATGCGATGGAGTATGCAAATGACCAACTGAAGGCCATTGCAGAATGGCCAAA
TGTACAACGCCAAGATGCAAGCGCTACACATGCGGAGGTTATTAGGCAGTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGACAACTTCTTCAAGGGCCCCAAAGCACCTATGGACGAAAGAGGAGGAGGCCACCCTCGTTGAATGTCTAGTAGAGTTGGTATCCGTCGGCGGCTGGAGGTCGGACAA
CGAGACGTTTAGACTCGGTTATCATAGTCATCTACAGAAAATGATGGTTGAACGAATGCCGGGACATAACATACAGACTTCGACCATTGATTGTTGGATAAAGACGCTTA
AAAGAACGTTCCAAGCTATAGCTGAAATGCGGGGTCCATCGTGTAGTGAGTTCAGTTGGAACGATGAGCTCAAATGCATATTTGCCGAGAAGGACTTGTATGACAATTGG
GTGAAGGTCGAAGAGGAAGCATGGAAGCCAGAAATTAGAAACGGCAAAATCATTCGTAATGCGATGGAGTATGCAAATGACCAACTGAAGGCCATTGCAGAATGGCCAAA
TGTACAACGCCAAGATGCAAGCGCTACACATGCGGAGGTTATTAGGCAGTTGTAG
Protein sequenceShow/hide protein sequence
MTTSSRAPKHLWTKEEEATLVECLVELVSVGGWRSDNETFRLGYHSHLQKMMVERMPGHNIQTSTIDCWIKTLKRTFQAIAEMRGPSCSEFSWNDELKCIFAEKDLYDNW
VKVEEEAWKPEIRNGKIIRNAMEYANDQLKAIAEWPNVQRQDASATHAEVIRQL