CuGenDBv2

Gene ID	PI0025365
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Retrotransposon protein
Genome location	chr11:8657486..8658359
RNA-Seq Expression	PI0025365
Synteny	PI0025365
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR024752 - Myb/SANT-like domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0035621.1 retrotransposon protein [Cucumis melo var. makuwa]

1.9e-64

64.57

Show/hide

Query:  MTTSSRAPKHHWTKEEDATLVECLVELVSTGGWRSDNETFRPGYHSHLEKMMGERMPGHNVTASTIDCQIKTMKRAFQAISEMRGPSCSGFGWNDELKCI
        MT+SSR PKH WTKEE+A LVECLVELV+ GGWRSDN TFRPGY + L +MM  ++PG N+ ASTID +IK MKR F A++EMRGP+CSGFGWNDE KCI
Subjt:  MTTSSRAPKHHWTKEEDATLVECLVELVSTGGWRSDNETFRPGYHSHLEKMMGERMPGHNVTASTIDCQIKTMKRAFQAISEMRGPSCSGFGWNDELKCI

Query:  IVEKDLYNNWSHPVAKGLLNKPFLHYDDLCYVFGRDPAIGGRTETFVGVGSNVPVGYDGFSAYDGNDMEFPTMYT
        + EK+++++WSHP AKGLLNK F+HYD+L YVFG+D A GGR E+F  +GSN P GYD  +A    D +FP MY+
Subjt:  IVEKDLYNNWSHPVAKGLLNKPFLHYDDLCYVFGRDPAIGGRTETFVGVGSNVPVGYDGFSAYDGNDMEFPTMYT

KAA0038122.1 retrotransposon protein [Cucumis melo var. makuwa]

3.2e-64

64.57

Show/hide

Query:  MTTSSRAPKHHWTKEEDATLVECLVELVSTGGWRSDNETFRPGYHSHLEKMMGERMPGHNVTASTIDCQIKTMKRAFQAISEMRGPSCSGFGWNDELKCI
        MT+SSR PKH WTKEE+A LVECLVELV+ GGWRSDN TFRPGY + L +MM  ++PG N+ ASTID +IK MKR F A++EMRGP+CSGFGWNDE KCI
Subjt:  MTTSSRAPKHHWTKEEDATLVECLVELVSTGGWRSDNETFRPGYHSHLEKMMGERMPGHNVTASTIDCQIKTMKRAFQAISEMRGPSCSGFGWNDELKCI

Query:  IVEKDLYNNWSHPVAKGLLNKPFLHYDDLCYVFGRDPAIGGRTETFVGVGSNVPVGYDGFSAYDGNDMEFPTMYT
        + EK+++++WSHP AKGLLNK F+HYD+L YVFG+D A GGR E+F  +GSN P GYD  +A    D +FP MY+
Subjt:  IVEKDLYNNWSHPVAKGLLNKPFLHYDDLCYVFGRDPAIGGRTETFVGVGSNVPVGYDGFSAYDGNDMEFPTMYT

KAA0047509.1 retrotransposon protein [Cucumis melo var. makuwa]

5.9e-66

65.71

Show/hide

Query:  MTTSSRAPKHHWTKEEDATLVECLVELVSTGGWRSDNETFRPGYHSHLEKMMGERMPGHNVTASTIDCQIKTMKRAFQAISEMRGPSCSGFGWNDELKCI
        MT+SSR PKH WTKEE+  LVECLVELV+ GGWRSDN TFRPGY + L +MM  ++PG N+ ASTID +IK MKR F A++EMRGP+CSGFGWNDE KCI
Subjt:  MTTSSRAPKHHWTKEEDATLVECLVELVSTGGWRSDNETFRPGYHSHLEKMMGERMPGHNVTASTIDCQIKTMKRAFQAISEMRGPSCSGFGWNDELKCI

Query:  IVEKDLYNNWSHPVAKGLLNKPFLHYDDLCYVFGRDPAIGGRTETFVGVGSNVPVGYDGFSAYDGNDMEFPTMYT
        I EK+++++WSHP AKGLLNK F+HYD+L YVFG+DPA GGR E+F  +GSN P GYD F+A    D +FP MY+
Subjt:  IVEKDLYNNWSHPVAKGLLNKPFLHYDDLCYVFGRDPAIGGRTETFVGVGSNVPVGYDGFSAYDGNDMEFPTMYT

KAA0048377.1 retrotransposon protein [Cucumis melo var. makuwa]

3.2e-64

64.57

Show/hide

Query:  MTTSSRAPKHHWTKEEDATLVECLVELVSTGGWRSDNETFRPGYHSHLEKMMGERMPGHNVTASTIDCQIKTMKRAFQAISEMRGPSCSGFGWNDELKCI
        MT+SSR PKH WTKEE+A LVECLVELV+ GGWRSDN TFRPGY + L +MM  ++PG N+ ASTID +IK MKR F A++EMRGP+CSGFGWNDE KCI
Subjt:  MTTSSRAPKHHWTKEEDATLVECLVELVSTGGWRSDNETFRPGYHSHLEKMMGERMPGHNVTASTIDCQIKTMKRAFQAISEMRGPSCSGFGWNDELKCI

Query:  IVEKDLYNNWSHPVAKGLLNKPFLHYDDLCYVFGRDPAIGGRTETFVGVGSNVPVGYDGFSAYDGNDMEFPTMYT
        + EK+++++WSHP AKGLLNK F+HYD+L YVFG+D A GGR E+F  +GSN P GYD  +A    D +FP MY+
Subjt:  IVEKDLYNNWSHPVAKGLLNKPFLHYDDLCYVFGRDPAIGGRTETFVGVGSNVPVGYDGFSAYDGNDMEFPTMYT

KAA0051960.1 retrotransposon protein [Cucumis melo var. makuwa]

1.9e-64

64.57

Show/hide

Query:  MTTSSRAPKHHWTKEEDATLVECLVELVSTGGWRSDNETFRPGYHSHLEKMMGERMPGHNVTASTIDCQIKTMKRAFQAISEMRGPSCSGFGWNDELKCI
        MT+SSR PKH WTKEE+A LVECL+ELV+ GGWRSDN TFRPGY + L +MM  ++PG N+ ASTID +IK MKR F A++EMRGP+CSGFGWNDE KCI
Subjt:  MTTSSRAPKHHWTKEEDATLVECLVELVSTGGWRSDNETFRPGYHSHLEKMMGERMPGHNVTASTIDCQIKTMKRAFQAISEMRGPSCSGFGWNDELKCI

Query:  IVEKDLYNNWSHPVAKGLLNKPFLHYDDLCYVFGRDPAIGGRTETFVGVGSNVPVGYDGFSAYDGNDMEFPTMYT
        + EK+++++WSHP AKGLLNK F+HYD+L YVFG+D AIGGR E+F  +GSN P GYD  +A    D +FP MY+
Subjt:  IVEKDLYNNWSHPVAKGLLNKPFLHYDDLCYVFGRDPAIGGRTETFVGVGSNVPVGYDGFSAYDGNDMEFPTMYT

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U216 Retrotransposon protein

2.9e-66

65.71

Show/hide

Query:  MTTSSRAPKHHWTKEEDATLVECLVELVSTGGWRSDNETFRPGYHSHLEKMMGERMPGHNVTASTIDCQIKTMKRAFQAISEMRGPSCSGFGWNDELKCI
        MT+SSR PKH WTKEE+  LVECLVELV+ GGWRSDN TFRPGY + L +MM  ++PG N+ ASTID +IK MKR F A++EMRGP+CSGFGWNDE KCI
Subjt:  MTTSSRAPKHHWTKEEDATLVECLVELVSTGGWRSDNETFRPGYHSHLEKMMGERMPGHNVTASTIDCQIKTMKRAFQAISEMRGPSCSGFGWNDELKCI

Query:  IVEKDLYNNWSHPVAKGLLNKPFLHYDDLCYVFGRDPAIGGRTETFVGVGSNVPVGYDGFSAYDGNDMEFPTMYT
        I EK+++++WSHP AKGLLNK F+HYD+L YVFG+DPA GGR E+F  +GSN P GYD F+A    D +FP MY+
Subjt:  IVEKDLYNNWSHPVAKGLLNKPFLHYDDLCYVFGRDPAIGGRTETFVGVGSNVPVGYDGFSAYDGNDMEFPTMYT

A0A5A7U9V6 Retrotransposon protein

9.2e-65

64.57

Show/hide

Query:  MTTSSRAPKHHWTKEEDATLVECLVELVSTGGWRSDNETFRPGYHSHLEKMMGERMPGHNVTASTIDCQIKTMKRAFQAISEMRGPSCSGFGWNDELKCI
        MT+SSR PKH WTKEE+A LVECL+ELV+ GGWRSDN TFRPGY + L +MM  ++PG N+ ASTID +IK MKR F A++EMRGP+CSGFGWNDE KCI
Subjt:  MTTSSRAPKHHWTKEEDATLVECLVELVSTGGWRSDNETFRPGYHSHLEKMMGERMPGHNVTASTIDCQIKTMKRAFQAISEMRGPSCSGFGWNDELKCI

Query:  IVEKDLYNNWSHPVAKGLLNKPFLHYDDLCYVFGRDPAIGGRTETFVGVGSNVPVGYDGFSAYDGNDMEFPTMYT
        + EK+++++WSHP AKGLLNK F+HYD+L YVFG+D AIGGR E+F  +GSN P GYD  +A    D +FP MY+
Subjt:  IVEKDLYNNWSHPVAKGLLNKPFLHYDDLCYVFGRDPAIGGRTETFVGVGSNVPVGYDGFSAYDGNDMEFPTMYT

A0A5A7UME4 Retrotransposon protein

1.6e-64

64.57

Show/hide

Query:  MTTSSRAPKHHWTKEEDATLVECLVELVSTGGWRSDNETFRPGYHSHLEKMMGERMPGHNVTASTIDCQIKTMKRAFQAISEMRGPSCSGFGWNDELKCI
        MT+SSR PKH WTKEE+A LVECLVELV+ GGWRSDN TFRPGY + L +MM  ++PG N+ ASTID +IK MKR F A++EMRGP+CSGFGWNDE KCI
Subjt:  MTTSSRAPKHHWTKEEDATLVECLVELVSTGGWRSDNETFRPGYHSHLEKMMGERMPGHNVTASTIDCQIKTMKRAFQAISEMRGPSCSGFGWNDELKCI

Query:  IVEKDLYNNWSHPVAKGLLNKPFLHYDDLCYVFGRDPAIGGRTETFVGVGSNVPVGYDGFSAYDGNDMEFPTMYT
        + EK+++++WSHP AKGLLNK F+HYD+L YVFG+D A GGR E+F  +GSN P GYD  +A    D +FP MY+
Subjt:  IVEKDLYNNWSHPVAKGLLNKPFLHYDDLCYVFGRDPAIGGRTETFVGVGSNVPVGYDGFSAYDGNDMEFPTMYT

A0A5D3CBF7 Retrotransposon protein

1.6e-64

64.57

Show/hide

Query:  MTTSSRAPKHHWTKEEDATLVECLVELVSTGGWRSDNETFRPGYHSHLEKMMGERMPGHNVTASTIDCQIKTMKRAFQAISEMRGPSCSGFGWNDELKCI
        MT+SSR PKH WTKEE+A LVECLVELV+ GGWRSDN TFRPGY + L +MM  ++PG N+ ASTID +IK MKR F A++EMRGP+CSGFGWNDE KCI
Subjt:  MTTSSRAPKHHWTKEEDATLVECLVELVSTGGWRSDNETFRPGYHSHLEKMMGERMPGHNVTASTIDCQIKTMKRAFQAISEMRGPSCSGFGWNDELKCI

Query:  IVEKDLYNNWSHPVAKGLLNKPFLHYDDLCYVFGRDPAIGGRTETFVGVGSNVPVGYDGFSAYDGNDMEFPTMYT
        + EK+++++WSHP AKGLLNK F+HYD+L YVFG+D A GGR E+F  +GSN P GYD  +A    D +FP MY+
Subjt:  IVEKDLYNNWSHPVAKGLLNKPFLHYDDLCYVFGRDPAIGGRTETFVGVGSNVPVGYDGFSAYDGNDMEFPTMYT

A0A5D3DPR5 Retrotransposon protein

9.2e-65

64.57

Show/hide

Query:  MTTSSRAPKHHWTKEEDATLVECLVELVSTGGWRSDNETFRPGYHSHLEKMMGERMPGHNVTASTIDCQIKTMKRAFQAISEMRGPSCSGFGWNDELKCI
        MT+SSR PKH WTKEE+A LVECLVELV+ GGWRSDN TFRPGY + L +MM  ++PG N+ ASTID +IK MKR F A++EMRGP+CSGFGWNDE KCI
Subjt:  MTTSSRAPKHHWTKEEDATLVECLVELVSTGGWRSDNETFRPGYHSHLEKMMGERMPGHNVTASTIDCQIKTMKRAFQAISEMRGPSCSGFGWNDELKCI

Query:  IVEKDLYNNWSHPVAKGLLNKPFLHYDDLCYVFGRDPAIGGRTETFVGVGSNVPVGYDGFSAYDGNDMEFPTMYT
        + EK+++++WSHP AKGLLNK F+HYD+L YVFG+D A GGR E+F  +GSN P GYD  +A    D +FP MY+
Subjt:  IVEKDLYNNWSHPVAKGLLNKPFLHYDDLCYVFGRDPAIGGRTETFVGVGSNVPVGYDGFSAYDGNDMEFPTMYT

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G24960.2 unknown protein

3.0e-07

23.88

Show/hide

Query:  WTKEEDATLVECLVELVSTGGWRSDNETFRPGYHSHLEKMMGERMPGHNVTASTIDCQIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIVEKDLYNNW-
        WT   D  L++ LVE V+ G      +TF     + +      +  G       +  + K ++R +  I  +     +GF W+     +I + D++N + 
Subjt:  WTKEEDATLVECLVELVSTGGWRSDNETFRPGYHSHLEKMMGERMPGHNVTASTIDCQIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIVEKDLYNNW-

Query:  -SHPVAKGLLNKPFLHYDDLCYVFGRDPAIGGRT
         +HP A+    K    Y +LC++FG++ + G  T
Subjt:  -SHPVAKGLLNKPFLHYDDLCYVFGRDPAIGGRT

Sequences

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CDS sequence

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ATGCATGGAGTCAATGGAGGGGCGAGCTTGCCGAAAAAAATGTTCAATGACTGGGAGTTGCGTAATCATATGACAACTTCTTCAAGGGCCCCAAAGCACCACTGGACGAA
AGAGGAAGATGCCACCCTCGTTGAATGTCTGGTAGAATTGGTATCAACCGGCGGGTGGAGGTCGGATAATGAGACGTTTAGACCCGGTTACCATAGTCATCTAGAGAAAA
TGATGGGGGAAAGGATGCCGGGACATAATGTAACGGCTTCAACCATAGATTGTCAAATAAAGACTATGAAAAGAGCGTTCCAAGCCATATCTGAAATGAGGGGCCCATCG
TGCAGTGGGTTCGGTTGGAACGATGAGCTCAAATGCATCATTGTCGAGAAAGACTTGTACAACAATTGGAGTCATCCAGTCGCGAAGGGCCTCCTAAACAAACCTTTTCT
CCATTACGACGATCTTTGCTACGTCTTTGGAAGAGATCCTGCAATAGGAGGTCGCACTGAAACCTTTGTCGGTGTTGGGTCGAACGTGCCAGTAGGATACGATGGATTTT
CAGCTTATGACGGGAACGATATGGAGTTCCCCACGATGTACACAGGGACTGGACATGTCACCTGA

mRNA sequence

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Protein sequence

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MHGVNGGASLPKKMFNDWELRNHMTTSSRAPKHHWTKEEDATLVECLVELVSTGGWRSDNETFRPGYHSHLEKMMGERMPGHNVTASTIDCQIKTMKRAFQAISEMRGPS
CSGFGWNDELKCIIVEKDLYNNWSHPVAKGLLNKPFLHYDDLCYVFGRDPAIGGRTETFVGVGSNVPVGYDGFSAYDGNDMEFPTMYTGTGHVT

PI0025365 (gene) of Melon (PI 482460) v1 genome