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PI0025370 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0025370
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr04:28961914..28963761
RNA-Seq ExpressionPI0025370
SyntenyPI0025370
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025314 - Domain of unknown function DUF4219
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043149.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.7e-8567.43Show/hide
Query:  MEKSDIARPISTILDGSNYITWAHQMRSFLIGRKLWRIVTGDITKPTPP------GKTINITENTDPTSSK---------------VTTHESTTEDAK--
        MEK+D+ARPISTILDG+NYITWAHQMRSFLIGRKLWRIVTGDITKP  P       + I   E  +   SK               + T     + AK  
Subjt:  MEKSDIARPISTILDGSNYITWAHQMRSFLIGRKLWRIVTGDITKPTPP------GKTINITENTDPTSSK---------------VTTHESTTEDAK--

Query:  ----------------------LVSLNQESGQSVNEYLATLQPIWTQLDQAKISLDHIRLIKVLMGLRPEYESVRAALLHRNPLPSLDAAVQEILFEEKR
                              LVSLNQE GQSVNEYLATLQPIWTQLDQAKIS DHIRLIKVLMGLRPEYESVRAALLHRNPLPSLDAAVQEILFEEKR
Subjt:  ----------------------LVSLNQESGQSVNEYLATLQPIWTQLDQAKISLDHIRLIKVLMGLRPEYESVRAALLHRNPLPSLDAAVQEILFEEKR

Query:  LGIVSSPPSDIALATTHTRSTNESTFCKNCKLHGHKFSNCPTIECMYCHKKGHILENCPTR
        LGIVSS  SD+ALATTH R  NE+ FCKNCKLHGHKF+NCPTIEC YCHK+GHIL+NCPTR
Subjt:  LGIVSSPPSDIALATTHTRSTNESTFCKNCKLHGHKFSNCPTIECMYCHKKGHILENCPTR

KAA0045094.1 putative mitochondrial protein [Cucumis melo var. makuwa]8.0e-8568.46Show/hide
Query:  MEKSDIARPISTILDGSNYITWAHQMRSFLIGRKLWRIVTGDIT---KPTPPGKTI--NITENTDPTSSKVTTHEST-----TED---------------
        MEK DIARPISTILDGSNYITWA+QMRSFLIGRKLWRIVTGDIT   KPTPP K    N TE+ D  +S  TT E T      ED               
Subjt:  MEKSDIARPISTILDGSNYITWAHQMRSFLIGRKLWRIVTGDIT---KPTPPGKTI--NITENTDPTSSKVTTHEST-----TED---------------

Query:  -------------------AKLVSLNQESGQSVNEYLATLQPIWTQLDQAKISLDHIRLIKVLMGLRPEYESVRAALLHRNPLPSLDAAVQEILFEEKRL
                           + LV+LNQE GQSVN+YLATLQPIWTQLDQAKIS DHIRLIKVLMGLRPEYESVRAALLHRN LPSLDAAVQEILFE+KRL
Subjt:  -------------------AKLVSLNQESGQSVNEYLATLQPIWTQLDQAKISLDHIRLIKVLMGLRPEYESVRAALLHRNPLPSLDAAVQEILFEEKRL

Query:  GIVSSPPSDIALATTHTRSTNESTFCKNCKLHGHKFSNCPTIECMYCHKKGHILENCPTR
        G+VSS P D+ALATTH R  NE++FCKNCKLH HKF+NCPTIEC YCHK+GHIL+NCPTR
Subjt:  GIVSSPPSDIALATTHTRSTNESTFCKNCKLHGHKFSNCPTIECMYCHKKGHILENCPTR

KAA0065380.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]3.5e-8875.76Show/hide
Query:  MEKSDIARPISTILDGSNYITWAHQMRSFLIGRKLWRIVTGDITKPTPP------GKTINITENTDPTSSKVTTHESTT---------EDAKLVSLNQES
        MEK+D+ARPISTILDG+NYITWAHQMRSFLIGRKLWRIVTGDITKP  P       + I   E  +   SK   H+  T           + LVSLNQE 
Subjt:  MEKSDIARPISTILDGSNYITWAHQMRSFLIGRKLWRIVTGDITKPTPP------GKTINITENTDPTSSKVTTHESTT---------EDAKLVSLNQES

Query:  GQSVNEYLATLQPIWTQLDQAKISLDHIRLIKVLMGLRPEYESVRAALLHRNPLPSLDAAVQEILFEEKRLGIVSSPPSDIALATTHTRSTNESTFCKNC
        GQSVNEYLATLQPIWTQLDQAKIS DHIRLIKVLMGLRPEYESVRAALLHRNPLPSLDAAVQEILFEEKRLGIVSS  SD+ALATTH R  NE+ FCKNC
Subjt:  GQSVNEYLATLQPIWTQLDQAKISLDHIRLIKVLMGLRPEYESVRAALLHRNPLPSLDAAVQEILFEEKRLGIVSSPPSDIALATTHTRSTNESTFCKNC

Query:  KLHGHKFSNCPTIECMYCHKKGHILENCPTR
        KLHGHKF+NCPTIEC YCHK+GHIL+NCPTR
Subjt:  KLHGHKFSNCPTIECMYCHKKGHILENCPTR

XP_008450155.1 PREDICTED: uncharacterized protein LOC103491828 [Cucumis melo]8.0e-8568.46Show/hide
Query:  MEKSDIARPISTILDGSNYITWAHQMRSFLIGRKLWRIVTGDIT---KPTPPGKTI--NITENTDPTSSKVTTHEST-----TED---------------
        MEK DIARPISTILDGSNYITWA+QMRSFLIGRKLWRIVTGDIT   KPTPP K    N TE+ D  +S  TT E T      ED               
Subjt:  MEKSDIARPISTILDGSNYITWAHQMRSFLIGRKLWRIVTGDIT---KPTPPGKTI--NITENTDPTSSKVTTHEST-----TED---------------

Query:  -------------------AKLVSLNQESGQSVNEYLATLQPIWTQLDQAKISLDHIRLIKVLMGLRPEYESVRAALLHRNPLPSLDAAVQEILFEEKRL
                           + LV+LNQE GQSVN+YLATLQPIWTQLDQAKIS DHIRLIKVLMGLRPEYESVRAALLHRN LPSLDAAVQEILFE+KRL
Subjt:  -------------------AKLVSLNQESGQSVNEYLATLQPIWTQLDQAKISLDHIRLIKVLMGLRPEYESVRAALLHRNPLPSLDAAVQEILFEEKRL

Query:  GIVSSPPSDIALATTHTRSTNESTFCKNCKLHGHKFSNCPTIECMYCHKKGHILENCPTR
        G+VSS P D+ALATTH R  NE++FCKNCKLH HKF+NCPTIEC YCHK+GHIL+NCPTR
Subjt:  GIVSSPPSDIALATTHTRSTNESTFCKNCKLHGHKFSNCPTIECMYCHKKGHILENCPTR

XP_031739694.1 uncharacterized protein LOC105434738 [Cucumis sativus]4.5e-8863.67Show/hide
Query:  MEKSDIARPISTILDGSNYITWAHQMRSFLIGRKLWRIVTGDITKPTPPGKTINITENTDPTSSKVTTHESTTE--------------------------
        MEK ++ARPISTILDG+NYITWAHQMRSFLIGRKLWRIVTGDITKP  P   ++ TEN D   S VT  E+T E                          
Subjt:  MEKSDIARPISTILDGSNYITWAHQMRSFLIGRKLWRIVTGDITKPTPPGKTINITENTDPTSSKVTTHESTTE--------------------------

Query:  ------------------------------------DAKLVSLNQESGQSVNEYLATLQPIWTQLDQAKISLDHIRLIKVLMGLRPEYESVRAALLHRNP
                                             ++LVSLNQE GQSVNEYLATLQPIWTQLDQAKI+ +HIRLIKVLMGLRPEYESVRAALLHRNP
Subjt:  ------------------------------------DAKLVSLNQESGQSVNEYLATLQPIWTQLDQAKISLDHIRLIKVLMGLRPEYESVRAALLHRNP

Query:  LPSLDAAVQEILFEEKRLGIVSSPPSDIALATTHTRSTNESTFCKNCKLHGHKFSNCPTIECMYCHKKGHILENCPTR
        LPSLDAA+QEILFEE RLGIVSS PSD+ALATTH+RS NES FCKNCKLHGHKF+NCPTIEC YCHK+GHIL+NCPTR
Subjt:  LPSLDAAVQEILFEEKRLGIVSSPPSDIALATTHTRSTNESTFCKNCKLHGHKFSNCPTIECMYCHKKGHILENCPTR

TrEMBL top hitse value%identityAlignment
A0A1S3BPL0 uncharacterized protein LOC1034918283.9e-8568.46Show/hide
Query:  MEKSDIARPISTILDGSNYITWAHQMRSFLIGRKLWRIVTGDIT---KPTPPGKTI--NITENTDPTSSKVTTHEST-----TED---------------
        MEK DIARPISTILDGSNYITWA+QMRSFLIGRKLWRIVTGDIT   KPTPP K    N TE+ D  +S  TT E T      ED               
Subjt:  MEKSDIARPISTILDGSNYITWAHQMRSFLIGRKLWRIVTGDIT---KPTPPGKTI--NITENTDPTSSKVTTHEST-----TED---------------

Query:  -------------------AKLVSLNQESGQSVNEYLATLQPIWTQLDQAKISLDHIRLIKVLMGLRPEYESVRAALLHRNPLPSLDAAVQEILFEEKRL
                           + LV+LNQE GQSVN+YLATLQPIWTQLDQAKIS DHIRLIKVLMGLRPEYESVRAALLHRN LPSLDAAVQEILFE+KRL
Subjt:  -------------------AKLVSLNQESGQSVNEYLATLQPIWTQLDQAKISLDHIRLIKVLMGLRPEYESVRAALLHRNPLPSLDAAVQEILFEEKRL

Query:  GIVSSPPSDIALATTHTRSTNESTFCKNCKLHGHKFSNCPTIECMYCHKKGHILENCPTR
        G+VSS P D+ALATTH R  NE++FCKNCKLH HKF+NCPTIEC YCHK+GHIL+NCPTR
Subjt:  GIVSSPPSDIALATTHTRSTNESTFCKNCKLHGHKFSNCPTIECMYCHKKGHILENCPTR

A0A5A7SZ66 Retrovirus-related Pol polyprotein from transposon TNT 1-945.1e-8567.05Show/hide
Query:  MEKSDIARPISTILDGSNYITWAHQMRSFLIGRKLWRIVTGDITKPTPP------GKTINITENTDPTSSK---------------VTTHESTTEDAK--
        MEK+D+ARPISTILDG+NYITWAHQMRSFLIGRKLWRIVTGDITKP  P       + I   E  +   SK               + T     + AK  
Subjt:  MEKSDIARPISTILDGSNYITWAHQMRSFLIGRKLWRIVTGDITKPTPP------GKTINITENTDPTSSK---------------VTTHESTTEDAK--

Query:  ----------------------LVSLNQESGQSVNEYLATLQPIWTQLDQAKISLDHIRLIKVLMGLRPEYESVRAALLHRNPLPSLDAAVQEILFEEKR
                              LVSLNQE GQSVNEYLATLQPIWTQLDQAKIS DHIRLIKVLMGLRPEYE VRAALLHRNPLPSLDAAVQEILFEEKR
Subjt:  ----------------------LVSLNQESGQSVNEYLATLQPIWTQLDQAKISLDHIRLIKVLMGLRPEYESVRAALLHRNPLPSLDAAVQEILFEEKR

Query:  LGIVSSPPSDIALATTHTRSTNESTFCKNCKLHGHKFSNCPTIECMYCHKKGHILENCPTR
        LGIVSS  SD+ALATTH R  NE+ FCKNCKLHGHKF+NCPTIEC YCHK+GHIL+NCPTR
Subjt:  LGIVSSPPSDIALATTHTRSTNESTFCKNCKLHGHKFSNCPTIECMYCHKKGHILENCPTR

A0A5A7TPN5 Putative mitochondrial protein3.9e-8568.46Show/hide
Query:  MEKSDIARPISTILDGSNYITWAHQMRSFLIGRKLWRIVTGDIT---KPTPPGKTI--NITENTDPTSSKVTTHEST-----TED---------------
        MEK DIARPISTILDGSNYITWA+QMRSFLIGRKLWRIVTGDIT   KPTPP K    N TE+ D  +S  TT E T      ED               
Subjt:  MEKSDIARPISTILDGSNYITWAHQMRSFLIGRKLWRIVTGDIT---KPTPPGKTI--NITENTDPTSSKVTTHEST-----TED---------------

Query:  -------------------AKLVSLNQESGQSVNEYLATLQPIWTQLDQAKISLDHIRLIKVLMGLRPEYESVRAALLHRNPLPSLDAAVQEILFEEKRL
                           + LV+LNQE GQSVN+YLATLQPIWTQLDQAKIS DHIRLIKVLMGLRPEYESVRAALLHRN LPSLDAAVQEILFE+KRL
Subjt:  -------------------AKLVSLNQESGQSVNEYLATLQPIWTQLDQAKISLDHIRLIKVLMGLRPEYESVRAALLHRNPLPSLDAAVQEILFEEKRL

Query:  GIVSSPPSDIALATTHTRSTNESTFCKNCKLHGHKFSNCPTIECMYCHKKGHILENCPTR
        G+VSS P D+ALATTH R  NE++FCKNCKLH HKF+NCPTIEC YCHK+GHIL+NCPTR
Subjt:  GIVSSPPSDIALATTHTRSTNESTFCKNCKLHGHKFSNCPTIECMYCHKKGHILENCPTR

A0A5A7VDW0 Retrovirus-related Pol polyprotein from transposon TNT 1-941.7e-8875.76Show/hide
Query:  MEKSDIARPISTILDGSNYITWAHQMRSFLIGRKLWRIVTGDITKPTPP------GKTINITENTDPTSSKVTTHESTT---------EDAKLVSLNQES
        MEK+D+ARPISTILDG+NYITWAHQMRSFLIGRKLWRIVTGDITKP  P       + I   E  +   SK   H+  T           + LVSLNQE 
Subjt:  MEKSDIARPISTILDGSNYITWAHQMRSFLIGRKLWRIVTGDITKPTPP------GKTINITENTDPTSSKVTTHESTT---------EDAKLVSLNQES

Query:  GQSVNEYLATLQPIWTQLDQAKISLDHIRLIKVLMGLRPEYESVRAALLHRNPLPSLDAAVQEILFEEKRLGIVSSPPSDIALATTHTRSTNESTFCKNC
        GQSVNEYLATLQPIWTQLDQAKIS DHIRLIKVLMGLRPEYESVRAALLHRNPLPSLDAAVQEILFEEKRLGIVSS  SD+ALATTH R  NE+ FCKNC
Subjt:  GQSVNEYLATLQPIWTQLDQAKISLDHIRLIKVLMGLRPEYESVRAALLHRNPLPSLDAAVQEILFEEKRLGIVSSPPSDIALATTHTRSTNESTFCKNC

Query:  KLHGHKFSNCPTIECMYCHKKGHILENCPTR
        KLHGHKF+NCPTIEC YCHK+GHIL+NCPTR
Subjt:  KLHGHKFSNCPTIECMYCHKKGHILENCPTR

A0A5D3DG18 Retrovirus-related Pol polyprotein from transposon TNT 1-941.3e-8567.43Show/hide
Query:  MEKSDIARPISTILDGSNYITWAHQMRSFLIGRKLWRIVTGDITKPTPP------GKTINITENTDPTSSK---------------VTTHESTTEDAK--
        MEK+D+ARPISTILDG+NYITWAHQMRSFLIGRKLWRIVTGDITKP  P       + I   E  +   SK               + T     + AK  
Subjt:  MEKSDIARPISTILDGSNYITWAHQMRSFLIGRKLWRIVTGDITKPTPP------GKTINITENTDPTSSK---------------VTTHESTTEDAK--

Query:  ----------------------LVSLNQESGQSVNEYLATLQPIWTQLDQAKISLDHIRLIKVLMGLRPEYESVRAALLHRNPLPSLDAAVQEILFEEKR
                              LVSLNQE GQSVNEYLATLQPIWTQLDQAKIS DHIRLIKVLMGLRPEYESVRAALLHRNPLPSLDAAVQEILFEEKR
Subjt:  ----------------------LVSLNQESGQSVNEYLATLQPIWTQLDQAKISLDHIRLIKVLMGLRPEYESVRAALLHRNPLPSLDAAVQEILFEEKR

Query:  LGIVSSPPSDIALATTHTRSTNESTFCKNCKLHGHKFSNCPTIECMYCHKKGHILENCPTR
        LGIVSS  SD+ALATTH R  NE+ FCKNCKLHGHKF+NCPTIEC YCHK+GHIL+NCPTR
Subjt:  LGIVSSPPSDIALATTHTRSTNESTFCKNCKLHGHKFSNCPTIECMYCHKKGHILENCPTR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAAACGGGGAACGAGAAACAAGGAACAGGAAAGGGAAGCATAGTCTGCTCAGACCCAGCCGCCGTCTCTGCCCACATTCTGTCCAGCCGCCGCCCCTGCTCAGCCC
AGATCCCGTTGCCTCTTCAGATTCTGTCACCGCCAGTCACAAAACCAACAGATTCGCCGCAAGATTTCCGTCCAGATCAGGTCGCGAACCAGTCACGAAACCACCCAGTT
CAGTTTTCGCCACGAAAATCCCGTCCAATTGCCCCGTCGCCGCTCCTGTCCAGATCTCATCACCGCCTAGCCACATCTCATCGCCGACAGGTTGCGGAACCACTACTGTC
CAGATCCGCTGCACACCCCTGTCGGCGTATAGATCCACCGCACGCCCCTGCATACAGATGGAGAAAAGTGACATTGCCCGTCCCATTAGCACTATTCTTGATGGATCGAA
TTACATCACTTGGGCTCATCAAATGAGGAGTTTCTTGATTGGTCGAAAACTATGGCGCATAGTCACTGGAGATATCACCAAACCCACTCCTCCCGGGAAAACCATAAACA
TCACTGAAAATACCGATCCTACCTCCTCTAAAGTCACTACTCATGAATCTACCACAGAAGATGCCAAACTTGTTAGCTTAAACCAGGAAAGCGGACAATCTGTGAATGAA
TACTTGGCTACTCTCCAACCTATTTGGACTCAGCTAGATCAAGCAAAAATCAGTCTTGATCATATCCGTCTTATCAAAGTTCTCATGGGACTCCGCCCAGAGTATGAATC
AGTTCGTGCTGCTCTGTTACACCGCAACCCCTTACCATCTCTTGACGCCGCCGTTCAGGAGATTTTATTTGAGGAGAAACGTCTTGGCATTGTCTCCTCTCCACCATCCG
ATATTGCTCTGGCCACCACTCATACTCGATCTACCAATGAGTCTACCTTTTGCAAAAACTGTAAACTTCATGGCCACAAGTTCTCTAACTGTCCTACCATTGAGTGCATG
TATTGTCATAAGAAAGGGCACATCCTAGAAAACTGTCCAACTCGCCTGATGGAAAAAACGAACATGCAGCGGAAACAGGATCGGAAAAAATACTCTAATTGCAGAAAACA
ACATGCTCGGAAAAATAACCCTAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGAGAAACGGGGAACGAGAAACAAGGAACAGGAAAGGGAAGCATAGTCTGCTCAGACCCAGCCGCCGTCTCTGCCCACATTCTGTCCAGCCGCCGCCCCTGCTCAGCCC
AGATCCCGTTGCCTCTTCAGATTCTGTCACCGCCAGTCACAAAACCAACAGATTCGCCGCAAGATTTCCGTCCAGATCAGGTCGCGAACCAGTCACGAAACCACCCAGTT
CAGTTTTCGCCACGAAAATCCCGTCCAATTGCCCCGTCGCCGCTCCTGTCCAGATCTCATCACCGCCTAGCCACATCTCATCGCCGACAGGTTGCGGAACCACTACTGTC
CAGATCCGCTGCACACCCCTGTCGGCGTATAGATCCACCGCACGCCCCTGCATACAGATGGAGAAAAGTGACATTGCCCGTCCCATTAGCACTATTCTTGATGGATCGAA
TTACATCACTTGGGCTCATCAAATGAGGAGTTTCTTGATTGGTCGAAAACTATGGCGCATAGTCACTGGAGATATCACCAAACCCACTCCTCCCGGGAAAACCATAAACA
TCACTGAAAATACCGATCCTACCTCCTCTAAAGTCACTACTCATGAATCTACCACAGAAGATGCCAAACTTGTTAGCTTAAACCAGGAAAGCGGACAATCTGTGAATGAA
TACTTGGCTACTCTCCAACCTATTTGGACTCAGCTAGATCAAGCAAAAATCAGTCTTGATCATATCCGTCTTATCAAAGTTCTCATGGGACTCCGCCCAGAGTATGAATC
AGTTCGTGCTGCTCTGTTACACCGCAACCCCTTACCATCTCTTGACGCCGCCGTTCAGGAGATTTTATTTGAGGAGAAACGTCTTGGCATTGTCTCCTCTCCACCATCCG
ATATTGCTCTGGCCACCACTCATACTCGATCTACCAATGAGTCTACCTTTTGCAAAAACTGTAAACTTCATGGCCACAAGTTCTCTAACTGTCCTACCATTGAGTGCATG
TATTGTCATAAGAAAGGGCACATCCTAGAAAACTGTCCAACTCGCCTGATGGAAAAAACGAACATGCAGCGGAAACAGGATCGGAAAAAATACTCTAATTGCAGAAAACA
ACATGCTCGGAAAAATAACCCTAAATAA
Protein sequenceShow/hide protein sequence
MRNGERETRNRKGKHSLLRPSRRLCPHSVQPPPLLSPDPVASSDSVTASHKTNRFAARFPSRSGREPVTKPPSSVFATKIPSNCPVAAPVQISSPPSHISSPTGCGTTTV
QIRCTPLSAYRSTARPCIQMEKSDIARPISTILDGSNYITWAHQMRSFLIGRKLWRIVTGDITKPTPPGKTINITENTDPTSSKVTTHESTTEDAKLVSLNQESGQSVNE
YLATLQPIWTQLDQAKISLDHIRLIKVLMGLRPEYESVRAALLHRNPLPSLDAAVQEILFEEKRLGIVSSPPSDIALATTHTRSTNESTFCKNCKLHGHKFSNCPTIECM
YCHKKGHILENCPTRLMEKTNMQRKQDRKKYSNCRKQHARKNNPK