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PI0025374 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0025374
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationchr12:19736229..19737064
RNA-Seq ExpressionPI0025374
SyntenyPI0025374
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036566.1 retrotransposon protein [Cucumis melo var. makuwa]3.5e-2444.81Show/hide
Query:  RWRSPNKLVSESQNPRENTSNGTKEKG---VGARLKRIKQDGSYANYVKKFPNYSASSSEMVKSVLMDAFLTGLEPALQAEVTSHHSMTLEGCTKEAQLV
        RW +  K +S  ++ ++      K  G   +GARL RI+QDG YA+Y+KKF  YSA   EM +SVL+DAF+TGLE  LQAEV S H M LE C +EAQ+V
Subjt:  RWRSPNKLVSESQNPRENTSNGTKEKG---VGARLKRIKQDGSYANYVKKFPNYSASSSEMVKSVLMDAFLTGLEPALQAEVTSHHSMTLEGCTKEAQLV

Query:  NYGNLALKLALSEWGGHGLGNIDAQAQNTKVGSSSTNKREGRHTDLPMRQILIP
        +  + A+KLAL++W   G   ++AQAQ  K  +     +EG+  +   +QI IP
Subjt:  NYGNLALKLALSEWGGHGLGNIDAQAQNTKVGSSSTNKREGRHTDLPMRQILIP

KAA0062448.1 disease resistance protein [Cucumis melo var. makuwa]4.5e-2450.39Show/hide
Query:  EKGVGARLKRIKQDGSYANYVKKFPNYSASSSEMVKSVLMDAFLTGLEPALQAEVTSHHSMTLEGCTKEAQLVNYGNLALKLALSEWGGHGLGNIDAQAQ
        E  +GARL RIKQDG Y++Y+KKF  YSA   EM +SVL+DAF+TGLE  LQAEV S H +TLE C +EAQ+V+  +LA+ LAL +W G+G   + AQA 
Subjt:  EKGVGARLKRIKQDGSYANYVKKFPNYSASSSEMVKSVLMDAFLTGLEPALQAEVTSHHSMTLEGCTKEAQLVNYGNLALKLALSEWGGHGLGNIDAQAQ

Query:  NTKVGSSSTNKREGRHTDLPMRQILIP
          K   ++   +EG+  D  M+Q+ +P
Subjt:  NTKVGSSSTNKREGRHTDLPMRQILIP

TYK22652.1 retrotransposon protein [Cucumis melo var. makuwa]4.1e-2546.1Show/hide
Query:  RWRSPNKLVSESQNPRENTSNGTKEKG---VGARLKRIKQDGSYANYVKKFPNYSASSSEMVKSVLMDAFLTGLEPALQAEVTSHHSMTLEGCTKEAQLV
        RW +  K +S  ++ ++      K  G   +GARL RI+QDG YA+Y+KKF  YSA   EM +SVL+DAF+TGLE  LQAEV S H MTLE C +EAQ+V
Subjt:  RWRSPNKLVSESQNPRENTSNGTKEKG---VGARLKRIKQDGSYANYVKKFPNYSASSSEMVKSVLMDAFLTGLEPALQAEVTSHHSMTLEGCTKEAQLV

Query:  NYGNLALKLALSEWGGHGLGNIDAQAQNTKVGSSSTNKREGRHTDLPMRQILIP
        +  + A+KLAL++W   G   ++AQAQ  K  +     +EG+  +  M+QI IP
Subjt:  NYGNLALKLALSEWGGHGLGNIDAQAQNTKVGSSSTNKREGRHTDLPMRQILIP

XP_031745472.1 uncharacterized protein K02A2.6-like [Cucumis sativus]4.5e-2447.1Show/hide
Query:  RWRSPNKLVSESQNPRE---NTSNGTKEKGVGARLKRIKQDGSYANYVKKFPNYSASSSEMVKSVLMDAFLTGLEPALQAEVTSHHSMTLEGCTKEAQLV
        RW +  K V   ++ +E   +  N T ++ +GARL RIKQ+GSY+ YVKKF  YSA   +M +SVL+DAFLTGLEP+LQAEV S H  TLE C KEAQLV
Subjt:  RWRSPNKLVSESQNPRE---NTSNGTKEKGVGARLKRIKQDGSYANYVKKFPNYSASSSEMVKSVLMDAFLTGLEPALQAEVTSHHSMTLEGCTKEAQLV

Query:  NYGNLALKLALSEWGGHGLGNIDAQA-QNTKVGSSSTNKREGRHTDLPMRQILIP
        N  N+ALKLA+ E     L  ++ +  +N+        K E + T+  M+Q+ IP
Subjt:  NYGNLALKLALSEWGGHGLGNIDAQA-QNTKVGSSSTNKREGRHTDLPMRQILIP

XP_031745726.1 uncharacterized protein K02A2.6-like [Cucumis sativus]4.5e-2447.1Show/hide
Query:  RWRSPNKLVSESQNPRE---NTSNGTKEKGVGARLKRIKQDGSYANYVKKFPNYSASSSEMVKSVLMDAFLTGLEPALQAEVTSHHSMTLEGCTKEAQLV
        RW +  K V   ++ +E   +  N T ++ +GARL RIKQ+GSY+ YVKKF  YSA   +M +SVL+DAFLTGLEP+LQAEV S H  TLE C KEAQLV
Subjt:  RWRSPNKLVSESQNPRE---NTSNGTKEKGVGARLKRIKQDGSYANYVKKFPNYSASSSEMVKSVLMDAFLTGLEPALQAEVTSHHSMTLEGCTKEAQLV

Query:  NYGNLALKLALSEWGGHGLGNIDAQA-QNTKVGSSSTNKREGRHTDLPMRQILIP
        N  N+ALKLA+ E     L  ++ +  +N+        K E + T+  M+Q+ IP
Subjt:  NYGNLALKLALSEWGGHGLGNIDAQA-QNTKVGSSSTNKREGRHTDLPMRQILIP

TrEMBL top hitse value%identityAlignment
A0A5A7T3B8 Retrotransposon protein1.7e-2444.81Show/hide
Query:  RWRSPNKLVSESQNPRENTSNGTKEKG---VGARLKRIKQDGSYANYVKKFPNYSASSSEMVKSVLMDAFLTGLEPALQAEVTSHHSMTLEGCTKEAQLV
        RW +  K +S  ++ ++      K  G   +GARL RI+QDG YA+Y+KKF  YSA   EM +SVL+DAF+TGLE  LQAEV S H M LE C +EAQ+V
Subjt:  RWRSPNKLVSESQNPRENTSNGTKEKG---VGARLKRIKQDGSYANYVKKFPNYSASSSEMVKSVLMDAFLTGLEPALQAEVTSHHSMTLEGCTKEAQLV

Query:  NYGNLALKLALSEWGGHGLGNIDAQAQNTKVGSSSTNKREGRHTDLPMRQILIP
        +  + A+KLAL++W   G   ++AQAQ  K  +     +EG+  +   +QI IP
Subjt:  NYGNLALKLALSEWGGHGLGNIDAQAQNTKVGSSSTNKREGRHTDLPMRQILIP

A0A5A7TH70 DNA polymerase epsilon catalytic subunit8.4e-2449.61Show/hide
Query:  EKGVGARLKRIKQDGSYANYVKKFPNYSASSSEMVKSVLMDAFLTGLEPALQAEVTSHHSMTLEGCTKEAQLVNYGNLALKLALSEWGGHGLGNIDAQAQ
        E  +GARL RIKQDG Y++Y+KKF  YSA   EM +SVL+DAF+TGLE  LQAEV S H +TLE C +EAQ+V+  +LA+ LAL++W G+G   + AQA 
Subjt:  EKGVGARLKRIKQDGSYANYVKKFPNYSASSSEMVKSVLMDAFLTGLEPALQAEVTSHHSMTLEGCTKEAQLVNYGNLALKLALSEWGGHGLGNIDAQAQ

Query:  NTKVGSSSTNKREGRHTDLPMRQILIP
          K   ++   +E +  D  M+Q+ +P
Subjt:  NTKVGSSSTNKREGRHTDLPMRQILIP

A0A5A7V4D8 Disease resistance protein2.2e-2450.39Show/hide
Query:  EKGVGARLKRIKQDGSYANYVKKFPNYSASSSEMVKSVLMDAFLTGLEPALQAEVTSHHSMTLEGCTKEAQLVNYGNLALKLALSEWGGHGLGNIDAQAQ
        E  +GARL RIKQDG Y++Y+KKF  YSA   EM +SVL+DAF+TGLE  LQAEV S H +TLE C +EAQ+V+  +LA+ LAL +W G+G   + AQA 
Subjt:  EKGVGARLKRIKQDGSYANYVKKFPNYSASSSEMVKSVLMDAFLTGLEPALQAEVTSHHSMTLEGCTKEAQLVNYGNLALKLALSEWGGHGLGNIDAQAQ

Query:  NTKVGSSSTNKREGRHTDLPMRQILIP
          K   ++   +EG+  D  M+Q+ +P
Subjt:  NTKVGSSSTNKREGRHTDLPMRQILIP

A0A5D3DGC7 Retrotransposon protein2.0e-2546.1Show/hide
Query:  RWRSPNKLVSESQNPRENTSNGTKEKG---VGARLKRIKQDGSYANYVKKFPNYSASSSEMVKSVLMDAFLTGLEPALQAEVTSHHSMTLEGCTKEAQLV
        RW +  K +S  ++ ++      K  G   +GARL RI+QDG YA+Y+KKF  YSA   EM +SVL+DAF+TGLE  LQAEV S H MTLE C +EAQ+V
Subjt:  RWRSPNKLVSESQNPRENTSNGTKEKG---VGARLKRIKQDGSYANYVKKFPNYSASSSEMVKSVLMDAFLTGLEPALQAEVTSHHSMTLEGCTKEAQLV

Query:  NYGNLALKLALSEWGGHGLGNIDAQAQNTKVGSSSTNKREGRHTDLPMRQILIP
        +  + A+KLAL++W   G   ++AQAQ  K  +     +EG+  +  M+QI IP
Subjt:  NYGNLALKLALSEWGGHGLGNIDAQAQNTKVGSSSTNKREGRHTDLPMRQILIP

A0A5D3DUJ0 Ty3/gypsy retrotransposon protein3.8e-2444.81Show/hide
Query:  RWRSPNKLVSESQNPRENTSNGTKEKG---VGARLKRIKQDGSYANYVKKFPNYSASSSEMVKSVLMDAFLTGLEPALQAEVTSHHSMTLEGCTKEAQLV
        RW +  K V   ++ +       K  G   +GARL RIKQDG Y++Y+KKF  YSA   EM +SVL+DAF+TGLE  LQAEV S H +TLE C +EAQ+V
Subjt:  RWRSPNKLVSESQNPRENTSNGTKEKG---VGARLKRIKQDGSYANYVKKFPNYSASSSEMVKSVLMDAFLTGLEPALQAEVTSHHSMTLEGCTKEAQLV

Query:  NYGNLALKLALSEWGGHGLGNIDAQAQNTKVGSSSTNKREGRHTDLPMRQILIP
        +  +LA+ LAL +W G+G   + AQA   K   ++   +EG+  D  M+Q+ +P
Subjt:  NYGNLALKLALSEWGGHGLGNIDAQAQNTKVGSSSTNKREGRHTDLPMRQILIP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGACAGCCCATCAGGTGGAGGAGTCCTAACAAATTGGTATCAGAGTCGCAAAATCCTAGGGAGAACACAAGCAATGGCACAAAGGAGAAGGGAGTAGGCGCCCGTCT
CAAACGCATTAAGCAAGATGGATCTTATGCGAACTACGTGAAGAAGTTTCCGAACTACTCTGCGTCGTCGTCGGAGATGGTGAAGAGTGTTCTCATGGATGCCTTTTTGA
CTGGTTTGGAACCAGCTCTGCAAGCGGAAGTGACGAGCCATCATTCGATGACACTGGAGGGTTGTACGAAGGAAGCCCAACTGGTAAACTATGGGAATCTGGCCCTTAAA
TTAGCCCTAAGTGAGTGGGGTGGTCATGGGCTTGGTAACATAGACGCCCAAGCCCAAAATACGAAAGTGGGAAGTTCAAGTACTAATAAAAGGGAAGGAAGACATACCGA
CTTACCTATGAGGCAGATTTTGATTCCAGGGGAAATTACACGAAGGGTGAGCCACCGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGACAGCCCATCAGGTGGAGGAGTCCTAACAAATTGGTATCAGAGTCGCAAAATCCTAGGGAGAACACAAGCAATGGCACAAAGGAGAAGGGAGTAGGCGCCCGTCT
CAAACGCATTAAGCAAGATGGATCTTATGCGAACTACGTGAAGAAGTTTCCGAACTACTCTGCGTCGTCGTCGGAGATGGTGAAGAGTGTTCTCATGGATGCCTTTTTGA
CTGGTTTGGAACCAGCTCTGCAAGCGGAAGTGACGAGCCATCATTCGATGACACTGGAGGGTTGTACGAAGGAAGCCCAACTGGTAAACTATGGGAATCTGGCCCTTAAA
TTAGCCCTAAGTGAGTGGGGTGGTCATGGGCTTGGTAACATAGACGCCCAAGCCCAAAATACGAAAGTGGGAAGTTCAAGTACTAATAAAAGGGAAGGAAGACATACCGA
CTTACCTATGAGGCAGATTTTGATTCCAGGGGAAATTACACGAAGGGTGAGCCACCGATGA
Protein sequenceShow/hide protein sequence
MGQPIRWRSPNKLVSESQNPRENTSNGTKEKGVGARLKRIKQDGSYANYVKKFPNYSASSSEMVKSVLMDAFLTGLEPALQAEVTSHHSMTLEGCTKEAQLVNYGNLALK
LALSEWGGHGLGNIDAQAQNTKVGSSSTNKREGRHTDLPMRQILIPGEITRRVSHR