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PI0025384 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0025384
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionDiphthamide biosynthesis protein 3-like
Genome locationchr01:169148..171232
RNA-Seq ExpressionPI0025384
SyntenyPI0025384
Gene Ontology termsGO:0002098 - tRNA wobble uridine modification (biological process)
GO:0017183 - peptidyl-diphthamide biosynthetic process from peptidyl-histidine (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005829 - cytosol (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR007872 - DPH-type metal-binding domain
IPR036671 - DPH-type metal-binding domain superfamily
IPR044248 - Diphthamide biosynthesis protein 3/4-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004137002.1 diphthamide biosynthesis protein 3 [Cucumis sativus]2.1e-4196.47Show/hide
Query:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLESSKQHPIVVA
        MSYDDVEIEDMEWN+ELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLD SNQKNNKGLE SKQHPIVVA
Subjt:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLESSKQHPIVVA

XP_008454889.1 PREDICTED: diphthamide biosynthesis protein 3-like [Cucumis melo]3.2e-4297.65Show/hide
Query:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLESSKQHPIVVA
        MSYDDVEIEDM+WNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLE SKQHPIVVA
Subjt:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLESSKQHPIVVA

XP_022136247.1 diphthamide biosynthesis protein 3-like [Momordica charantia]1.3e-3889.41Show/hide
Query:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLESSKQHPIVVA
        MSYDDVEIEDMEWN+ELQA+TYPCPCGDLFQITKEDL+LGEEIARCPSCSLYITVIYNMEDFL DS+QKNNKG++ SKQ PIVVA
Subjt:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLESSKQHPIVVA

XP_022972367.1 diphthamide biosynthesis protein 3-like [Cucurbita maxima]2.6e-3992.94Show/hide
Query:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLESSKQHPIVVA
        MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFL DS+ KNNKGL+ SKQ PIVVA
Subjt:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLESSKQHPIVVA

XP_038887330.1 diphthamide biosynthesis protein 3-like [Benincasa hispida]8.0e-4196.47Show/hide
Query:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLESSKQHPIVVA
        MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFL DSNQKNNKGLE SKQ PIVVA
Subjt:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLESSKQHPIVVA

TrEMBL top hitse value%identityAlignment
A0A0A0K4W9 DPH-type MB domain-containing protein1.0e-4196.47Show/hide
Query:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLESSKQHPIVVA
        MSYDDVEIEDMEWN+ELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLD SNQKNNKGLE SKQHPIVVA
Subjt:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLESSKQHPIVVA

A0A1S3BZL5 diphthamide biosynthesis protein 3-like1.6e-4297.65Show/hide
Query:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLESSKQHPIVVA
        MSYDDVEIEDM+WNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLE SKQHPIVVA
Subjt:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLESSKQHPIVVA

A0A5A7SJN1 Diphthamide biosynthesis protein 3-like1.6e-4297.65Show/hide
Query:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLESSKQHPIVVA
        MSYDDVEIEDM+WNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLE SKQHPIVVA
Subjt:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLESSKQHPIVVA

A0A6J1C519 diphthamide biosynthesis protein 3-like6.2e-3989.41Show/hide
Query:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLESSKQHPIVVA
        MSYDDVEIEDMEWN+ELQA+TYPCPCGDLFQITKEDL+LGEEIARCPSCSLYITVIYNMEDFL DS+QKNNKG++ SKQ PIVVA
Subjt:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLESSKQHPIVVA

A0A6J1I4L9 diphthamide biosynthesis protein 3-like1.2e-3992.94Show/hide
Query:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLESSKQHPIVVA
        MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFL DS+ KNNKGL+ SKQ PIVVA
Subjt:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLESSKQHPIVVA

SwissProt top hitse value%identityAlignment
Q21102 DPH3 homolog2.2e-1759.02Show/hide
Query:  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFL
        +D+VEIED E++EE   + YPCPCGD F+I +E L++GE++A+CPSCSL I VIY+ EDF+
Subjt:  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFL

Q6VUC1 DPH3 homolog3.7e-1757.38Show/hide
Query:  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFL
        +D+VEIED +++E+ + + YPCPCGD F ITKEDL+ GE++A CPSCSL I VIY+ + F+
Subjt:  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFL

Q96FX2 DPH3 homolog4.9e-1757.38Show/hide
Query:  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFL
        +D+VEIED +++E+ + + YPCPCGD F ITKEDL+ GE++A CPSCSL I VIY+ + F+
Subjt:  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFL

Q9UT33 Diphthamide biosynthesis protein 32.9e-1743.37Show/hide
Query:  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLESSKQHPIVVA
        YD++E+ED  ++     +T+PCPCGD F+I+ EDL+LGE++ARCPSCSL + VIY+ ++F++  N  +          PI++A
Subjt:  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLESSKQHPIVVA

Q9VGQ9 DPH3 homolog3.7e-1755.88Show/hide
Query:  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKN
        +D+VEIED E++EE + + YPCPCGD FQI+KE+L  GEE+A CPSCSL I VIY+ E F  + ++++
Subjt:  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKN

Arabidopsis top hitse value%identityAlignment
AT2G15910.1 CSL zinc finger domain-containing protein3.5e-3479.27Show/hide
Query:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLESSKQHPI
        MSYDDVEIEDMEWNEE+QA+TYPCPCGDLFQITKEDL+LGEEIA CPSCSLYITVIYNMEDF +D+ +KNN   E   +HP+
Subjt:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLESSKQHPI

AT2G15910.2 CSL zinc finger domain-containing protein2.4e-3578.82Show/hide
Query:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLESSKQHPIVVA
        MSYDDVEIEDMEWNEE+QA+TYPCPCGDLFQITKEDL+LGEEIA CPSCSLYITVIYNMEDF +D+ +KNN   E   +HP+ VA
Subjt:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLESSKQHPIVVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTACGACGACGTGGAGATTGAAGACATGGAGTGGAACGAGGAACTACAGGCCTTCACGTACCCTTGCCCCTGCGGCGACTTGTTCCAGATCACCAAGGAGGATCT
TAAGCTCGGTGAAGAGATTGCTCGGTGCCCTAGCTGCTCTCTTTACATCACAGTCATCTACAACATGGAAGATTTTCTGGATGACTCGAATCAGAAGAATAACAAAGGAC
TTGAGTCCTCTAAACAACACCCTATCGTAGTCGCTTAA
mRNA sequenceShow/hide mRNA sequence
AAAACTAATTCGTTAATTATATAAAAATATTATTAAAAAATAAATAAAAATAAAGGGTAAATTGGACGCGGTTTTTCGTAACAATTCGGAGCCCCCAAAAGAAACCCAAA
TCCTTCCATCTTCTTCTTTACCTTCCGAACTCGGCGGTTTCTGACTCGCCGTCGTCGCCGGATCCACCTGAGCAACCATGTCGTACGACGACGTGGAGATTGAAGACATG
GAGTGGAACGAGGAACTACAGGCCTTCACGTACCCTTGCCCCTGCGGCGACTTGTTCCAGATCACCAAGGAGGATCTTAAGCTCGGTGAAGAGATTGCTCGGTGCCCTAG
CTGCTCTCTTTACATCACAGTCATCTACAACATGGAAGATTTTCTGGATGACTCGAATCAGAAGAATAACAAAGGACTTGAGTCCTCTAAACAACACCCTATCGTAGTCG
CTTAATAATTCAGAACCGTCAATTCAAATCATGGCTTCGCCGCAGCAGCTGAGATGAAATTTTGTCAGCCATTGTCAATTCTGAAGATGTTCTTCTTTGGCATTAAAGTT
TCTTCCTTTGCTTTTCATTACTCTTTTACAGAATTGGTCTAGGAAATAGAGGAAGGTAGAGTTGCGTCTGGAAAAATGCATTAAAGTACTATTTTTGTTCCTTCAAAAAG
TAATTTATAGATTCTTGATCTTTTCACAATCGAATGTAGTGAGTGGTGATTTCTTTTGTCGAAGTAAATCTGATAATCAAAAGAAACTTTAGACATAAAATGGACGAACG
CTCTAATAATCTAAAAATGGTTTGAATCT
Protein sequenceShow/hide protein sequence
MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDDSNQKNNKGLESSKQHPIVVA