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PI0025400 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0025400
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr10:10956910..10957368
RNA-Seq ExpressionPI0025400
SyntenyPI0025400
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026280.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.4e-2648.99Show/hide
Query:  QGRPRRGRQVAASVQATGSANRAPKSDEISSNPHGATEQNVEESMLNRFTQRVADHIMPSNSTLDKRFGIERLKALRATTFKGTIDSADTEKWLTLIEKC
        QGRPR+     AS  A  +A  + +SD  SS PH   E NVEE +L+R  QR+   I  + S  +K++GIERLKAL ATTF GT +  D E+WLTLIEKC
Subjt:  QGRPRRGRQVAASVQATGSANRAPKSDEISSNPHGATEQNVEESMLNRFTQRVADHIMPSNSTLDKRFGIERLKALRATTFKGTIDSADTEKWLTLIEKC

Query:  FGVMECLKEKKVKLATFLLQESAEDWWTHHVTRADEPSFVSWEEFRKTF
        F V  C +++KV+LA FLLQ  AEDWW    +R      + W EF+K F
Subjt:  FGVMECLKEKKVKLATFLLQESAEDWWTHHVTRADEPSFVSWEEFRKTF

KAA0039561.1 hypothetical protein E6C27_scaffold744G00310 [Cucumis melo var. makuwa]2.4e-2757.81Show/hide
Query:  MTLQGRPRRGRQVAASVQATGSANRAPKSDEISSNPHGATEQNVEESMLNRFTQRVADHIMPSNSTLDKRFGIERLKALRATTFKGTIDSADTEKWLTLI
        M  + R R  RQV   V AT SAN+  +S+EIS+NP+   +QN E+SM +RF QR+ DH MP+   +DKRF IERL+AL ATTF+ T + ADT+KWL LI
Subjt:  MTLQGRPRRGRQVAASVQATGSANRAPKSDEISSNPHGATEQNVEESMLNRFTQRVADHIMPSNSTLDKRFGIERLKALRATTFKGTIDSADTEKWLTLI

Query:  EKCFGVMECLKEKKVKLATFLLQESAED
        EK FGVME  +E+KVKLATFLLQ S +D
Subjt:  EKCFGVMECLKEKKVKLATFLLQESAED

KAA0047014.1 hypothetical protein E6C27_scaffold230G002160 [Cucumis melo var. makuwa]1.2e-2663.55Show/hide
Query:  RRGRQVAASVQATGSANRAPKSDEISSNPHGATEQNVEESMLNRFTQRVADHIMPSNSTLDKRFGIERLKALRATTFKGTIDSADTEKWLTLIEKCFGVM
        RRGRQVA SV  T  ANRA  S +ISSNPH +  QNVEESM +RF QR+ DH MP  ST+DKRFGIERLKAL A TF+G  + AD  K L+L+EKCFGVM
Subjt:  RRGRQVAASVQATGSANRAPKSDEISSNPHGATEQNVEESMLNRFTQRVADHIMPSNSTLDKRFGIERLKALRATTFKGTIDSADTEKWLTLIEKCFGVM

Query:  ECLKEKK
        +C K+++
Subjt:  ECLKEKK

KAA0054080.1 hypothetical protein E6C27_scaffold1371G00020 [Cucumis melo var. makuwa]3.6e-2863.3Show/hide
Query:  QVAASVQATGSANRAPKSDEISSNPHGATEQNVEESMLNRFTQRVADHIMPSNSTLDKRFGIERLKALRATTFKGTIDSADTEKWLTLIEKCFGVMECLK
        QVA +VQ+ GSANRA   DE+SSNPH    QNVEESM NRF QRVADH++P  S ++KR  IER+KAL AT F+GTI   + +KWL+L EKCF VM+C K
Subjt:  QVAASVQATGSANRAPKSDEISSNPHGATEQNVEESMLNRFTQRVADHIMPSNSTLDKRFGIERLKALRATTFKGTIDSADTEKWLTLIEKCFGVMECLK

Query:  EKKVKLATF
        E+KVKLA F
Subjt:  EKKVKLATF

TYK27664.1 uncharacterized protein E5676_scaffold93G00280 [Cucumis melo var. makuwa]2.1e-2863.3Show/hide
Query:  QVAASVQATGSANRAPKSDEISSNPHGATEQNVEESMLNRFTQRVADHIMPSNSTLDKRFGIERLKALRATTFKGTIDSADTEKWLTLIEKCFGVMECLK
        QVA +VQ+ GSANRA   DE+SSNPH    QNVEESM NRF +RVADH++P  S ++KR  IER+KAL ATTF+GTI   + +KWL+L EKCF VM+C K
Subjt:  QVAASVQATGSANRAPKSDEISSNPHGATEQNVEESMLNRFTQRVADHIMPSNSTLDKRFGIERLKALRATTFKGTIDSADTEKWLTLIEKCFGVMECLK

Query:  EKKVKLATF
        E+KVKLA F
Subjt:  EKKVKLATF

TrEMBL top hitse value%identityAlignment
A0A5A7SJ99 DNA/RNA polymerases superfamily protein1.6e-2648.99Show/hide
Query:  QGRPRRGRQVAASVQATGSANRAPKSDEISSNPHGATEQNVEESMLNRFTQRVADHIMPSNSTLDKRFGIERLKALRATTFKGTIDSADTEKWLTLIEKC
        QGRPR+     AS  A  +A  + +SD  SS PH   E NVEE +L+R  QR+   I  + S  +K++GIERLKAL ATTF GT +  D E+WLTLIEKC
Subjt:  QGRPRRGRQVAASVQATGSANRAPKSDEISSNPHGATEQNVEESMLNRFTQRVADHIMPSNSTLDKRFGIERLKALRATTFKGTIDSADTEKWLTLIEKC

Query:  FGVMECLKEKKVKLATFLLQESAEDWWTHHVTRADEPSFVSWEEFRKTF
        F V  C +++KV+LA FLLQ  AEDWW    +R      + W EF+K F
Subjt:  FGVMECLKEKKVKLATFLLQESAEDWWTHHVTRADEPSFVSWEEFRKTF

A0A5A7TVM1 Uncharacterized protein5.7e-2763.55Show/hide
Query:  RRGRQVAASVQATGSANRAPKSDEISSNPHGATEQNVEESMLNRFTQRVADHIMPSNSTLDKRFGIERLKALRATTFKGTIDSADTEKWLTLIEKCFGVM
        RRGRQVA SV  T  ANRA  S +ISSNPH +  QNVEESM +RF QR+ DH MP  ST+DKRFGIERLKAL A TF+G  + AD  K L+L+EKCFGVM
Subjt:  RRGRQVAASVQATGSANRAPKSDEISSNPHGATEQNVEESMLNRFTQRVADHIMPSNSTLDKRFGIERLKALRATTFKGTIDSADTEKWLTLIEKCFGVM

Query:  ECLKEKK
        +C K+++
Subjt:  ECLKEKK

A0A5A7UFQ1 Uncharacterized protein1.8e-2863.3Show/hide
Query:  QVAASVQATGSANRAPKSDEISSNPHGATEQNVEESMLNRFTQRVADHIMPSNSTLDKRFGIERLKALRATTFKGTIDSADTEKWLTLIEKCFGVMECLK
        QVA +VQ+ GSANRA   DE+SSNPH    QNVEESM NRF QRVADH++P  S ++KR  IER+KAL AT F+GTI   + +KWL+L EKCF VM+C K
Subjt:  QVAASVQATGSANRAPKSDEISSNPHGATEQNVEESMLNRFTQRVADHIMPSNSTLDKRFGIERLKALRATTFKGTIDSADTEKWLTLIEKCFGVMECLK

Query:  EKKVKLATF
        E+KVKLA F
Subjt:  EKKVKLATF

A0A5D3BUF6 Uncharacterized protein1.1e-2757.81Show/hide
Query:  MTLQGRPRRGRQVAASVQATGSANRAPKSDEISSNPHGATEQNVEESMLNRFTQRVADHIMPSNSTLDKRFGIERLKALRATTFKGTIDSADTEKWLTLI
        M  + R R  RQV   V AT SAN+  +S+EIS+NP+   +QN E+SM +RF QR+ DH MP+   +DKRF IERL+AL ATTF+ T + ADT+KWL LI
Subjt:  MTLQGRPRRGRQVAASVQATGSANRAPKSDEISSNPHGATEQNVEESMLNRFTQRVADHIMPSNSTLDKRFGIERLKALRATTFKGTIDSADTEKWLTLI

Query:  EKCFGVMECLKEKKVKLATFLLQESAED
        EK FGVME  +E+KVKLATFLLQ S +D
Subjt:  EKCFGVMECLKEKKVKLATFLLQESAED

A0A5D3DVY7 Uncharacterized protein1.0e-2863.3Show/hide
Query:  QVAASVQATGSANRAPKSDEISSNPHGATEQNVEESMLNRFTQRVADHIMPSNSTLDKRFGIERLKALRATTFKGTIDSADTEKWLTLIEKCFGVMECLK
        QVA +VQ+ GSANRA   DE+SSNPH    QNVEESM NRF +RVADH++P  S ++KR  IER+KAL ATTF+GTI   + +KWL+L EKCF VM+C K
Subjt:  QVAASVQATGSANRAPKSDEISSNPHGATEQNVEESMLNRFTQRVADHIMPSNSTLDKRFGIERLKALRATTFKGTIDSADTEKWLTLIEKCFGVMECLK

Query:  EKKVKLATF
        E+KVKLA F
Subjt:  EKKVKLATF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACACTACAAGGAAGGCCAAGGCGAGGTAGGCAAGTGGCAGCTAGTGTCCAAGCTACTGGGAGCGCTAATAGAGCACCGAAATCGGATGAAATATCGAGTAATCCTCA
TGGTGCAACTGAGCAAAACGTAGAAGAAAGTATGTTGAACCGTTTTACTCAAAGAGTAGCAGATCATATTATGCCATCAAACTCTACGTTAGACAAGAGATTTGGCATTG
AAAGGTTGAAGGCGTTAAGAGCAACGACCTTCAAAGGAACCATTGATTCGGCCGACACAGAAAAGTGGTTAACCTTGATTGAGAAGTGTTTTGGGGTGATGGAGTGCCTC
AAAGAAAAGAAGGTGAAATTAGCAACATTTTTGTTGCAAGAAAGCGCCGAAGATTGGTGGACTCACCACGTAACAAGAGCTGACGAGCCAAGTTTTGTCTCTTGGGAAGA
GTTTCGAAAGACGTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGACACTACAAGGAAGGCCAAGGCGAGGTAGGCAAGTGGCAGCTAGTGTCCAAGCTACTGGGAGCGCTAATAGAGCACCGAAATCGGATGAAATATCGAGTAATCCTCA
TGGTGCAACTGAGCAAAACGTAGAAGAAAGTATGTTGAACCGTTTTACTCAAAGAGTAGCAGATCATATTATGCCATCAAACTCTACGTTAGACAAGAGATTTGGCATTG
AAAGGTTGAAGGCGTTAAGAGCAACGACCTTCAAAGGAACCATTGATTCGGCCGACACAGAAAAGTGGTTAACCTTGATTGAGAAGTGTTTTGGGGTGATGGAGTGCCTC
AAAGAAAAGAAGGTGAAATTAGCAACATTTTTGTTGCAAGAAAGCGCCGAAGATTGGTGGACTCACCACGTAACAAGAGCTGACGAGCCAAGTTTTGTCTCTTGGGAAGA
GTTTCGAAAGACGTTCTGA
Protein sequenceShow/hide protein sequence
MTLQGRPRRGRQVAASVQATGSANRAPKSDEISSNPHGATEQNVEESMLNRFTQRVADHIMPSNSTLDKRFGIERLKALRATTFKGTIDSADTEKWLTLIEKCFGVMECL
KEKKVKLATFLLQESAEDWWTHHVTRADEPSFVSWEEFRKTF