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PI0025401 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0025401
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationchr01:19298903..19302042
RNA-Seq ExpressionPI0025401
SyntenyPI0025401
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059849.1 uncharacterized protein E6C27_scaffold108G001320 [Cucumis melo var. makuwa]1.8e-2643.14Show/hide
Query:  IYRRGTGKPVDFGSFAVNQLKRHIGSYAIKLPIWLPRFFCSFLLTQNCTILHPNEAPGPSPSKLQLSYRLFQGAHVPDIEHSLRPPSSSNLPHPDDLRTP
        +YR      VD G+F  NQL RH+GS+ +KLPI LPRFF   LL  N  IL  ++AP P P  L LSYRLFQG+HVPDI+H + P     +    D    
Subjt:  IYRRGTGKPVDFGSFAVNQLKRHIGSYAIKLPIWLPRFFCSFLLTQNCTILHPNEAPGPSPSKLQLSYRLFQGAHVPDIEHSLRPPSSSNLPHPDDLRTP

Query:  DGGLLLPPPLANQVLHALSSESRSLSTIIHDLTERRRLIDSVVSSVRLLIPST
          G  +   LA+++L++L+++SRSL+T+I  ++ERR  IDS++  ++    S+
Subjt:  DGGLLLPPPLANQVLHALSSESRSLSTIIHDLTERRRLIDSVVSSVRLLIPST

KAA0063935.1 uncharacterized protein E6C27_scaffold616G00780 [Cucumis melo var. makuwa]4.1e-2643.14Show/hide
Query:  IYRRGTGKPVDFGSFAVNQLKRHIGSYAIKLPIWLPRFFCSFLLTQNCTILHPNEAPGPSPSKLQLSYRLFQGAHVPDIEHSLRPPSSSNLPHPDDLRTP
        +Y+   G   D   F  N+L RH+G++ +K+PI LP FF S L+  N  IL  N+APG  P    LSYRLFQG+HVPD+EH +RP  +  L   DD+   
Subjt:  IYRRGTGKPVDFGSFAVNQLKRHIGSYAIKLPIWLPRFFCSFLLTQNCTILHPNEAPGPSPSKLQLSYRLFQGAHVPDIEHSLRPPSSSNLPHPDDLRTP

Query:  DGGLLLPPPLANQVLHALSSESRSLSTIIHDLTERRRLIDSVVSSVRLLIPST
          G  +P  LA+++++ LS+ESR+ ST I+ ++ RR  +DS+V  ++ LIPS+
Subjt:  DGGLLLPPPLANQVLHALSSESRSLSTIIHDLTERRRLIDSVVSSVRLLIPST

TYK03159.1 uncharacterized protein E5676_scaffold11G00350 [Cucumis melo var. makuwa]1.8e-2642.17Show/hide
Query:  SIFCRLVIEEDAAIYRRGTGKPVDFGSFAVNQLKRHIGSYAIKLPIWLPRFFCSFLLTQNCTILHPNEAPGPSPSKLQLSYRLFQGAHVPDIEHSLRPPS
        S+F  L    D  +YR      VD G+F  NQL RH+GS+ +KLPI LP+FF   LL  N  +L  + APGP P  L LSYRLFQG+HVPDI+H + P  
Subjt:  SIFCRLVIEEDAAIYRRGTGKPVDFGSFAVNQLKRHIGSYAIKLPIWLPRFFCSFLLTQNCTILHPNEAPGPSPSKLQLSYRLFQGAHVPDIEHSLRPPS

Query:  SSNLPHPDDLRTPDGGLLLPPPLANQVLHALSSESRSLSTIIHDLTERRRLIDSVVSSVRLLIPST
           L    D         +   LA+++L++  +ESRSLST I  ++ER   IDS++  ++   PS+
Subjt:  SSNLPHPDDLRTPDGGLLLPPPLANQVLHALSSESRSLSTIIHDLTERRRLIDSVVSSVRLLIPST

XP_008441663.1 PREDICTED: uncharacterized protein LOC103485747 [Cucumis melo]2.2e-2742.77Show/hide
Query:  SIFCRLVIEEDAAIYRRGTGKPVDFGSFAVNQLKRHIGSYAIKLPIWLPRFFCSFLLTQNCTILHPNEAPGPSPSKLQLSYRLFQGAHVPDIEHSLRPPS
        S+F  L    D  +YR      VD G+F  NQL RH+GS+ +KLPI LP+FF   LL  N  +L  + APGP P  L LSYRLFQG+HVPDI+H + P  
Subjt:  SIFCRLVIEEDAAIYRRGTGKPVDFGSFAVNQLKRHIGSYAIKLPIWLPRFFCSFLLTQNCTILHPNEAPGPSPSKLQLSYRLFQGAHVPDIEHSLRPPS

Query:  SSNLPHPDDLRTPDGGLLLPPPLANQVLHALSSESRSLSTIIHDLTERRRLIDSVVSSVRLLIPST
           L    D      G  +   LA+++L++  +ESRSLST I  ++ER   IDS++  ++   PS+
Subjt:  SSNLPHPDDLRTPDGGLLLPPPLANQVLHALSSESRSLSTIIHDLTERRRLIDSVVSSVRLLIPST

XP_008466770.1 PREDICTED: uncharacterized protein LOC103504101 [Cucumis melo]1.8e-2643.14Show/hide
Query:  IYRRGTGKPVDFGSFAVNQLKRHIGSYAIKLPIWLPRFFCSFLLTQNCTILHPNEAPGPSPSKLQLSYRLFQGAHVPDIEHSLRPPSSSNLPHPDDLRTP
        +YR      VD G+F  NQL RH+GS+ +KLPI LPRFF   LL  N  IL  ++AP P P  L LSYRLFQG+HVPDI+H + P     +    D    
Subjt:  IYRRGTGKPVDFGSFAVNQLKRHIGSYAIKLPIWLPRFFCSFLLTQNCTILHPNEAPGPSPSKLQLSYRLFQGAHVPDIEHSLRPPSSSNLPHPDDLRTP

Query:  DGGLLLPPPLANQVLHALSSESRSLSTIIHDLTERRRLIDSVVSSVRLLIPST
          G  +   LA+++L++L+++SRSL+T+I  ++ERR  IDS++  ++    S+
Subjt:  DGGLLLPPPLANQVLHALSSESRSLSTIIHDLTERRRLIDSVVSSVRLLIPST

TrEMBL top hitse value%identityAlignment
A0A1S3B3X9 uncharacterized protein LOC1034857471.1e-2742.77Show/hide
Query:  SIFCRLVIEEDAAIYRRGTGKPVDFGSFAVNQLKRHIGSYAIKLPIWLPRFFCSFLLTQNCTILHPNEAPGPSPSKLQLSYRLFQGAHVPDIEHSLRPPS
        S+F  L    D  +YR      VD G+F  NQL RH+GS+ +KLPI LP+FF   LL  N  +L  + APGP P  L LSYRLFQG+HVPDI+H + P  
Subjt:  SIFCRLVIEEDAAIYRRGTGKPVDFGSFAVNQLKRHIGSYAIKLPIWLPRFFCSFLLTQNCTILHPNEAPGPSPSKLQLSYRLFQGAHVPDIEHSLRPPS

Query:  SSNLPHPDDLRTPDGGLLLPPPLANQVLHALSSESRSLSTIIHDLTERRRLIDSVVSSVRLLIPST
           L    D      G  +   LA+++L++  +ESRSLST I  ++ER   IDS++  ++   PS+
Subjt:  SSNLPHPDDLRTPDGGLLLPPPLANQVLHALSSESRSLSTIIHDLTERRRLIDSVVSSVRLLIPST

A0A1S3CS20 uncharacterized protein LOC1035041018.9e-2743.14Show/hide
Query:  IYRRGTGKPVDFGSFAVNQLKRHIGSYAIKLPIWLPRFFCSFLLTQNCTILHPNEAPGPSPSKLQLSYRLFQGAHVPDIEHSLRPPSSSNLPHPDDLRTP
        +YR      VD G+F  NQL RH+GS+ +KLPI LPRFF   LL  N  IL  ++AP P P  L LSYRLFQG+HVPDI+H + P     +    D    
Subjt:  IYRRGTGKPVDFGSFAVNQLKRHIGSYAIKLPIWLPRFFCSFLLTQNCTILHPNEAPGPSPSKLQLSYRLFQGAHVPDIEHSLRPPSSSNLPHPDDLRTP

Query:  DGGLLLPPPLANQVLHALSSESRSLSTIIHDLTERRRLIDSVVSSVRLLIPST
          G  +   LA+++L++L+++SRSL+T+I  ++ERR  IDS++  ++    S+
Subjt:  DGGLLLPPPLANQVLHALSSESRSLSTIIHDLTERRRLIDSVVSSVRLLIPST

A0A5A7UAG4 Uncharacterized protein1.1e-2742.77Show/hide
Query:  SIFCRLVIEEDAAIYRRGTGKPVDFGSFAVNQLKRHIGSYAIKLPIWLPRFFCSFLLTQNCTILHPNEAPGPSPSKLQLSYRLFQGAHVPDIEHSLRPPS
        S+F  L    D  +YR      VD G+F  NQL RH+GS+ +KLPI LP+FF   LL  N  +L  + APGP P  L LSYRLFQG+HVPDI+H + P  
Subjt:  SIFCRLVIEEDAAIYRRGTGKPVDFGSFAVNQLKRHIGSYAIKLPIWLPRFFCSFLLTQNCTILHPNEAPGPSPSKLQLSYRLFQGAHVPDIEHSLRPPS

Query:  SSNLPHPDDLRTPDGGLLLPPPLANQVLHALSSESRSLSTIIHDLTERRRLIDSVVSSVRLLIPST
           L    D      G  +   LA+++L++  +ESRSLST I  ++ER   IDS++  ++   PS+
Subjt:  SSNLPHPDDLRTPDGGLLLPPPLANQVLHALSSESRSLSTIIHDLTERRRLIDSVVSSVRLLIPST

A0A5D3BYK9 Uncharacterized protein8.9e-2742.17Show/hide
Query:  SIFCRLVIEEDAAIYRRGTGKPVDFGSFAVNQLKRHIGSYAIKLPIWLPRFFCSFLLTQNCTILHPNEAPGPSPSKLQLSYRLFQGAHVPDIEHSLRPPS
        S+F  L    D  +YR      VD G+F  NQL RH+GS+ +KLPI LP+FF   LL  N  +L  + APGP P  L LSYRLFQG+HVPDI+H + P  
Subjt:  SIFCRLVIEEDAAIYRRGTGKPVDFGSFAVNQLKRHIGSYAIKLPIWLPRFFCSFLLTQNCTILHPNEAPGPSPSKLQLSYRLFQGAHVPDIEHSLRPPS

Query:  SSNLPHPDDLRTPDGGLLLPPPLANQVLHALSSESRSLSTIIHDLTERRRLIDSVVSSVRLLIPST
           L    D         +   LA+++L++  +ESRSLST I  ++ER   IDS++  ++   PS+
Subjt:  SSNLPHPDDLRTPDGGLLLPPPLANQVLHALSSESRSLSTIIHDLTERRRLIDSVVSSVRLLIPST

A0A5D3DMD7 Uncharacterized protein8.9e-2743.14Show/hide
Query:  IYRRGTGKPVDFGSFAVNQLKRHIGSYAIKLPIWLPRFFCSFLLTQNCTILHPNEAPGPSPSKLQLSYRLFQGAHVPDIEHSLRPPSSSNLPHPDDLRTP
        +YR      VD G+F  NQL RH+GS+ +KLPI LPRFF   LL  N  IL  ++AP P P  L LSYRLFQG+HVPDI+H + P     +    D    
Subjt:  IYRRGTGKPVDFGSFAVNQLKRHIGSYAIKLPIWLPRFFCSFLLTQNCTILHPNEAPGPSPSKLQLSYRLFQGAHVPDIEHSLRPPSSSNLPHPDDLRTP

Query:  DGGLLLPPPLANQVLHALSSESRSLSTIIHDLTERRRLIDSVVSSVRLLIPST
          G  +   LA+++L++L+++SRSL+T+I  ++ERR  IDS++  ++    S+
Subjt:  DGGLLLPPPLANQVLHALSSESRSLSTIIHDLTERRRLIDSVVSSVRLLIPST

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGATAGAACTTGCTCTTCGATTTTTTGCAGGCTTGTAATTGAAGAGGATGCCGCTATTTATAGGCGAGGGACTGGTAAACCTGTTGATTTTGGTTCTTTTGCTGT
GAATCAACTAAAGCGTCATATAGGTTCCTATGCCATTAAACTCCCTATCTGGCTGCCTCGTTTTTTCTGCAGTTTCCTTCTGACTCAGAATTGTACTATACTTCATCCTA
ATGAGGCTCCTGGTCCTTCTCCTTCCAAACTTCAATTAAGCTATCGTCTTTTTCAAGGAGCTCATGTACCTGACATTGAGCATTCTCTACGCCCTCCTTCTTCCTCTAAT
CTTCCTCACCCTGATGATTTAAGAACTCCTGACGGTGGCCTGTTGCTTCCTCCTCCTCTTGCTAATCAAGTTTTGCATGCCTTATCCTCTGAATCAAGAAGTCTCAGTAC
TATCATTCATGATCTTACTGAACGACGAAGGCTTATTGATTCTGTTGTCTCTTCTGTTCGGTTGCTGATCCCTTCCACGGAGGAAATTCCTGATGACCATCCTGATCTTT
AA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGATAGAACTTGCTCTTCGATTTTTTGCAGGCTTGTAATTGAAGAGGATGCCGCTATTTATAGGCGAGGGACTGGTAAACCTGTTGATTTTGGTTCTTTTGCTGT
GAATCAACTAAAGCGTCATATAGGTTCCTATGCCATTAAACTCCCTATCTGGCTGCCTCGTTTTTTCTGCAGTTTCCTTCTGACTCAGAATTGTACTATACTTCATCCTA
ATGAGGCTCCTGGTCCTTCTCCTTCCAAACTTCAATTAAGCTATCGTCTTTTTCAAGGAGCTCATGTACCTGACATTGAGCATTCTCTACGCCCTCCTTCTTCCTCTAAT
CTTCCTCACCCTGATGATTTAAGAACTCCTGACGGTGGCCTGTTGCTTCCTCCTCCTCTTGCTAATCAAGTTTTGCATGCCTTATCCTCTGAATCAAGAAGTCTCAGTAC
TATCATTCATGATCTTACTGAACGACGAAGGCTTATTGATTCTGTTGTCTCTTCTGTTCGGTTGCTGATCCCTTCCACGGAGGAAATTCCTGATGACCATCCTGATCTTT
AA
Protein sequenceShow/hide protein sequence
MEDRTCSSIFCRLVIEEDAAIYRRGTGKPVDFGSFAVNQLKRHIGSYAIKLPIWLPRFFCSFLLTQNCTILHPNEAPGPSPSKLQLSYRLFQGAHVPDIEHSLRPPSSSN
LPHPDDLRTPDGGLLLPPPLANQVLHALSSESRSLSTIIHDLTERRRLIDSVVSSVRLLIPSTEEIPDDHPDL