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PI0025422 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0025422
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr06:15078853..15080511
RNA-Seq ExpressionPI0025422
SyntenyPI0025422
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033168.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]2.3e-1947.46Show/hide
Query:  MLLHVLAHDVKNRVVQQEFVRSGETISRHFNMVLVAVVRLHDELVK---------NHNQYR-------------TTAQIPAGVVSRMASSSRAPKHTWTR
        M LH+LAHD+KNRV+Q+ F+RSGETI RHFNMVL+A++RLHDEL+K            ++R                 +PAG    +A++ R PKH+  +
Subjt:  MLLHVLAHDVKNRVVQQEFVRSGETISRHFNMVLVAVVRLHDELVK---------NHNQYR-------------TTAQIPAGVVSRMASSSRAPKHTWTR

Query:  EEESTLVECLVELVSMGG
        EEE+ +VECLVELV++GG
Subjt:  EEESTLVECLVELVSMGG

KAA0033487.1 uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa]1.7e-1447.92Show/hide
Query:  MLLHVLAHDVKNRVVQQEFVRSGETISRHFNMVLVAVVRLHDELVKNHNQYRTTAQIPAGVVSRMAS-SSRAPKHTWTREEESTLVECLVELVSMG
        + LH++AHDVKNRV ++ F RSGET+SRHFN+VL  V+RLH+ L+K  +    +         +MAS +S+  KH WT  E+  LVECL++LV  G
Subjt:  MLLHVLAHDVKNRVVQQEFVRSGETISRHFNMVLVAVVRLHDELVKNHNQYRTTAQIPAGVVSRMAS-SSRAPKHTWTREEESTLVECLVELVSMG

KAA0057637.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]9.3e-1382.61Show/hide
Query:  MLLHVLAHDVKNRVVQQEFVRSGETISRHFNMVLVAVVRLHDELVK
        M LH+LAHDVKNRV+Q+EF+RSGETISRHFNMVL+AV+RLHDEL+K
Subjt:  MLLHVLAHDVKNRVVQQEFVRSGETISRHFNMVLVAVVRLHDELVK

TYK20320.1 retrotransposon protein [Cucumis melo var. makuwa]3.8e-1434.29Show/hide
Query:  MLLHVLAHDVKNRVVQQEFVRSGETISRHFNMVLVAVVRLHDELVK--NHN------------QYRTTA---------------QIPAG-----------
        M LH+LAHDVKNRV+Q++F+RSGETI  HFNMVL+AV+RLHDEL+K   HN                TA               ++P G           
Subjt:  MLLHVLAHDVKNRVVQQEFVRSGETISRHFNMVLVAVVRLHDELVK--NHN------------QYRTTA---------------QIPAG-----------

Query:  ----------------------------------------VVSRMASSSRAPKHTWTREEESTLVECLVELVSMG
                                                ++S M SS++ PKH W +E+E+ L+ECLVELV+ G
Subjt:  ----------------------------------------VVSRMASSSRAPKHTWTREEESTLVECLVELVSMG

TYK26842.1 uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa]1.7e-1447.92Show/hide
Query:  MLLHVLAHDVKNRVVQQEFVRSGETISRHFNMVLVAVVRLHDELVKNHNQYRTTAQIPAGVVSRMAS-SSRAPKHTWTREEESTLVECLVELVSMG
        + LH++AHDVKNRV ++ F RSGET+SRHFN+VL  V+RLH+ L+K  +    +         +MAS +S+  KH WT  E+  LVECL++LV  G
Subjt:  MLLHVLAHDVKNRVVQQEFVRSGETISRHFNMVLVAVVRLHDELVKNHNQYRTTAQIPAGVVSRMAS-SSRAPKHTWTREEESTLVECLVELVSMG

TrEMBL top hitse value%identityAlignment
A0A5A7SW62 Myb_DNA-bind_3 domain-containing protein8.2e-1547.92Show/hide
Query:  MLLHVLAHDVKNRVVQQEFVRSGETISRHFNMVLVAVVRLHDELVKNHNQYRTTAQIPAGVVSRMAS-SSRAPKHTWTREEESTLVECLVELVSMG
        + LH++AHDVKNRV ++ F RSGET+SRHFN+VL  V+RLH+ L+K  +    +         +MAS +S+  KH WT  E+  LVECL++LV  G
Subjt:  MLLHVLAHDVKNRVVQQEFVRSGETISRHFNMVLVAVVRLHDELVKNHNQYRTTAQIPAGVVSRMAS-SSRAPKHTWTREEESTLVECLVELVSMG

A0A5A7TXW1 Retrotransposon protein4.5e-1382.61Show/hide
Query:  MLLHVLAHDVKNRVVQQEFVRSGETISRHFNMVLVAVVRLHDELVK
        M LH+LAHDVKNRV+Q+EF+RSGETISRHFNMVL+AV+RLHDEL+K
Subjt:  MLLHVLAHDVKNRVVQQEFVRSGETISRHFNMVLVAVVRLHDELVK

A0A5D3CTT8 Putative nuclease HARBI11.1e-1947.46Show/hide
Query:  MLLHVLAHDVKNRVVQQEFVRSGETISRHFNMVLVAVVRLHDELVK---------NHNQYR-------------TTAQIPAGVVSRMASSSRAPKHTWTR
        M LH+LAHD+KNRV+Q+ F+RSGETI RHFNMVL+A++RLHDEL+K            ++R                 +PAG    +A++ R PKH+  +
Subjt:  MLLHVLAHDVKNRVVQQEFVRSGETISRHFNMVLVAVVRLHDELVK---------NHNQYR-------------TTAQIPAGVVSRMASSSRAPKHTWTR

Query:  EEESTLVECLVELVSMGG
        EEE+ +VECLVELV++GG
Subjt:  EEESTLVECLVELVSMGG

A0A5D3DA20 Retrotransposon protein1.8e-1434.29Show/hide
Query:  MLLHVLAHDVKNRVVQQEFVRSGETISRHFNMVLVAVVRLHDELVK--NHN------------QYRTTA---------------QIPAG-----------
        M LH+LAHDVKNRV+Q++F+RSGETI  HFNMVL+AV+RLHDEL+K   HN                TA               ++P G           
Subjt:  MLLHVLAHDVKNRVVQQEFVRSGETISRHFNMVLVAVVRLHDELVK--NHN------------QYRTTA---------------QIPAG-----------

Query:  ----------------------------------------VVSRMASSSRAPKHTWTREEESTLVECLVELVSMG
                                                ++S M SS++ PKH W +E+E+ L+ECLVELV+ G
Subjt:  ----------------------------------------VVSRMASSSRAPKHTWTREEESTLVECLVELVSMG

A0A5D3DTL0 Myb_DNA-bind_3 domain-containing protein8.2e-1547.92Show/hide
Query:  MLLHVLAHDVKNRVVQQEFVRSGETISRHFNMVLVAVVRLHDELVKNHNQYRTTAQIPAGVVSRMAS-SSRAPKHTWTREEESTLVECLVELVSMG
        + LH++AHDVKNRV ++ F RSGET+SRHFN+VL  V+RLH+ L+K  +    +         +MAS +S+  KH WT  E+  LVECL++LV  G
Subjt:  MLLHVLAHDVKNRVVQQEFVRSGETISRHFNMVLVAVVRLHDELVKNHNQYRTTAQIPAGVVSRMAS-SSRAPKHTWTREEESTLVECLVELVSMG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)5.8e-0539.62Show/hide
Query:  MLLHVLAHDVKNRVVQQEFVRSGETISRHFNMVLVAVVRLHDELVKNHNQYRT
        + L ++ H+++ R VQ+ F  SGETISRHFN VL AV+ +  +  + ++   T
Subjt:  MLLHVLAHDVKNRVVQQEFVRSGETISRHFNMVLVAVVRLHDELVKNHNQYRT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGCTTCACGTCCTAGCACACGATGTGAAGAACCGAGTGGTCCAGCAGGAGTTCGTGCGGTCCGGTGAGACAATTTCAAGGCATTTCAACATGGTGTTGGTGGCCGT
TGTACGTCTTCATGACGAGCTGGTAAAAAACCACAACCAGTACCGAACAACTGCACAAATCCCCGCTGGCGTTGTTTCGAGAATGGCAAGTTCGTCGAGGGCCCCCAAGC
ATACGTGGACCAGAGAAGAAGAGTCAACCCTCGTCGAATGTTTGGTGGAGTTGGTATCCATGGGGGGGGGGGGTGGAAATCGGACAACGGCACATTCTGACCCGGTTACT
TGGCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGCTTCACGTCCTAGCACACGATGTGAAGAACCGAGTGGTCCAGCAGGAGTTCGTGCGGTCCGGTGAGACAATTTCAAGGCATTTCAACATGGTGTTGGTGGCCGT
TGTACGTCTTCATGACGAGCTGGTAAAAAACCACAACCAGTACCGAACAACTGCACAAATCCCCGCTGGCGTTGTTTCGAGAATGGCAAGTTCGTCGAGGGCCCCCAAGC
ATACGTGGACCAGAGAAGAAGAGTCAACCCTCGTCGAATGTTTGGTGGAGTTGGTATCCATGGGGGGGGGGGGTGGAAATCGGACAACGGCACATTCTGACCCGGTTACT
TGGCAATGATTATGCGAATGATGTCGAAAAAGCTCCCAGGGTGTAGCATACAGGGGACTACGACTATTGACTGTCGGATCAAGACACTTAAGCGCACCTTTCAAGCCATA
TCGGAGATGCAGGGCCCTACCTGCAGTGGATTCGGCTAGAATGACAAGGTCAAATGCATAATTGCAGAGAAGGACCTCTTTGACAATTGGGTGAAGAGTCACCCA
Protein sequenceShow/hide protein sequence
MLLHVLAHDVKNRVVQQEFVRSGETISRHFNMVLVAVVRLHDELVKNHNQYRTTAQIPAGVVSRMASSSRAPKHTWTREEESTLVECLVELVSMGGGGGNRTTAHSDPVT
WQ