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PI0025572 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0025572
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr03:22269248..22271292
RNA-Seq ExpressionPI0025572
SyntenyPI0025572
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056624.1 hypothetical protein E6C27_scaffold288G001440 [Cucumis melo var. makuwa]6.0e-2765.18Show/hide
Query:  MHGMEKSLTKLHGMLKTVEFNIK-----------SIPEKRERYQVKGRGKVAVKASKVDAHAAP--GPKPIEPKPPKEAECYHYKKIEHWKRNYPLYLEE
        MH +EKSLT+LHGMLKT + NIK             P+KRER Q KG+ KV VKASKVDA A P   PKP EPKPPKE ECY  KKIEHW R  P+YLEE
Subjt:  MHGMEKSLTKLHGMLKTVEFNIK-----------SIPEKRERYQVKGRGKVAVKASKVDAHAAP--GPKPIEPKPPKEAECYHYKKIEHWKRNYPLYLEE

Query:  LKKNKGSVPSTS
        LKKNKGS+PSTS
Subjt:  LKKNKGSVPSTS

KAA0060179.1 hypothetical protein E6C27_scaffold542G00560 [Cucumis melo var. makuwa]1.1e-1770.83Show/hide
Query:  EKRERYQVKGRGKVAVKASKVDAHAAPGPKPIEPKPPKEAECYHYKKIEHWKRNYPLYLEELKKNKGSVPST
        +KRE+ Q KG+GKV VKASKVDA   P P+P EPK PKE ECY YKKI  WK NYPLYLEELKK+  SVPST
Subjt:  EKRERYQVKGRGKVAVKASKVDAHAAPGPKPIEPKPPKEAECYHYKKIEHWKRNYPLYLEELKKNKGSVPST

KAA0066495.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]3.9e-2664.04Show/hide
Query:  MHGMEKSLTKLHGMLKTVEFNIKSI-----------PEKRERYQVKGRGKVAVKASKVDAHAAPGP--KPIEPKPPKEAECYHYKKIEHWKRNYPLYLEE
        MHGM+KSLT+LHGMLKT++ NIKS            P+K+E  Q KG+GKVAVK SKVDA  AP P  K  EPKPPKE E YH KKI +WKRN PLYL+ 
Subjt:  MHGMEKSLTKLHGMLKTVEFNIKSI-----------PEKRERYQVKGRGKVAVKASKVDAHAAPGP--KPIEPKPPKEAECYHYKKIEHWKRNYPLYLEE

Query:  LKKNKGSVPSTSRT
        LKKNK SVP TSRT
Subjt:  LKKNKGSVPSTSRT

TYK07553.1 putative retrotransposon protein [Cucumis melo var. makuwa]6.4e-2165.31Show/hide
Query:  TVEFNIKSI-----------PEKRERYQVKGRGKVAVKASKVDAHAA--PGPKPIEPKPPKEAECYHYKKIEHWKRNYPLYLEELKKNKGSVPSTSRT
        T + NIKS            P+KRER Q KG+ KV VKASKVDA A   P PKP EPKPPKE ECY  KKIEHWKR  PLYLEELKKNKGS+PSTS T
Subjt:  TVEFNIKSI-----------PEKRERYQVKGRGKVAVKASKVDAHAA--PGPKPIEPKPPKEAECYHYKKIEHWKRNYPLYLEELKKNKGSVPSTSRT

XP_016901775.1 PREDICTED: uncharacterized protein LOC107991397 [Cucumis melo]1.3e-2158.56Show/hide
Query:  MHGMEKSLTKLHGMLKTVEFNIKS-----------IPEKRERYQVKGRGKVAVKASKVDAHAAPGP--KPIEPKPPKEAECYHYKKIEHWKRNYPLYLEE
        M+ M+KSL+KLHGM K  + NIKS            P+ R + Q KG  KV VK SKVD   AP P  KP +PKP KE ECYH KKI HW+RNYPLYLEE
Subjt:  MHGMEKSLTKLHGMLKTVEFNIKS-----------IPEKRERYQVKGRGKVAVKASKVDAHAAPGP--KPIEPKPPKEAECYHYKKIEHWKRNYPLYLEE

Query:  LKKNKGSVPST
        LK NKGSVP T
Subjt:  LKKNKGSVPST

TrEMBL top hitse value%identityAlignment
A0A1S4E1A7 uncharacterized protein LOC1079913976.2e-2258.56Show/hide
Query:  MHGMEKSLTKLHGMLKTVEFNIKS-----------IPEKRERYQVKGRGKVAVKASKVDAHAAPGP--KPIEPKPPKEAECYHYKKIEHWKRNYPLYLEE
        M+ M+KSL+KLHGM K  + NIKS            P+ R + Q KG  KV VK SKVD   AP P  KP +PKP KE ECYH KKI HW+RNYPLYLEE
Subjt:  MHGMEKSLTKLHGMLKTVEFNIKS-----------IPEKRERYQVKGRGKVAVKASKVDAHAAPGP--KPIEPKPPKEAECYHYKKIEHWKRNYPLYLEE

Query:  LKKNKGSVPST
        LK NKGSVP T
Subjt:  LKKNKGSVPST

A0A5A7UN47 Uncharacterized protein2.9e-2765.18Show/hide
Query:  MHGMEKSLTKLHGMLKTVEFNIK-----------SIPEKRERYQVKGRGKVAVKASKVDAHAAP--GPKPIEPKPPKEAECYHYKKIEHWKRNYPLYLEE
        MH +EKSLT+LHGMLKT + NIK             P+KRER Q KG+ KV VKASKVDA A P   PKP EPKPPKE ECY  KKIEHW R  P+YLEE
Subjt:  MHGMEKSLTKLHGMLKTVEFNIK-----------SIPEKRERYQVKGRGKVAVKASKVDAHAAP--GPKPIEPKPPKEAECYHYKKIEHWKRNYPLYLEE

Query:  LKKNKGSVPSTS
        LKKNKGS+PSTS
Subjt:  LKKNKGSVPSTS

A0A5A7VL77 Retrovirus-related Pol polyprotein from transposon TNT 1-941.9e-2664.04Show/hide
Query:  MHGMEKSLTKLHGMLKTVEFNIKSI-----------PEKRERYQVKGRGKVAVKASKVDAHAAPGP--KPIEPKPPKEAECYHYKKIEHWKRNYPLYLEE
        MHGM+KSLT+LHGMLKT++ NIKS            P+K+E  Q KG+GKVAVK SKVDA  AP P  K  EPKPPKE E YH KKI +WKRN PLYL+ 
Subjt:  MHGMEKSLTKLHGMLKTVEFNIKSI-----------PEKRERYQVKGRGKVAVKASKVDAHAAPGP--KPIEPKPPKEAECYHYKKIEHWKRNYPLYLEE

Query:  LKKNKGSVPSTSRT
        LKKNK SVP TSRT
Subjt:  LKKNKGSVPSTSRT

A0A5D3C6L2 Putative retrotransposon protein3.1e-2165.31Show/hide
Query:  TVEFNIKSI-----------PEKRERYQVKGRGKVAVKASKVDAHAA--PGPKPIEPKPPKEAECYHYKKIEHWKRNYPLYLEELKKNKGSVPSTSRT
        T + NIKS            P+KRER Q KG+ KV VKASKVDA A   P PKP EPKPPKE ECY  KKIEHWKR  PLYLEELKKNKGS+PSTS T
Subjt:  TVEFNIKSI-----------PEKRERYQVKGRGKVAVKASKVDAHAA--PGPKPIEPKPPKEAECYHYKKIEHWKRNYPLYLEELKKNKGSVPSTSRT

A0A5D3CZL7 Putative polyprotein6.2e-2258.56Show/hide
Query:  MHGMEKSLTKLHGMLKTVEFNIKS-----------IPEKRERYQVKGRGKVAVKASKVDAHAAPGP--KPIEPKPPKEAECYHYKKIEHWKRNYPLYLEE
        M+ M+KSL+KLHGM K  + NIKS            P+ R + Q KG  KV VK SKVD   AP P  KP +PKP KE ECYH KKI HW+RNYPLYLEE
Subjt:  MHGMEKSLTKLHGMLKTVEFNIKS-----------IPEKRERYQVKGRGKVAVKASKVDAHAAPGP--KPIEPKPPKEAECYHYKKIEHWKRNYPLYLEE

Query:  LKKNKGSVPST
        LK NKGSVP T
Subjt:  LKKNKGSVPST

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATGGGATGGAGAAGAGTTTGACTAAGTTGCATGGGATGCTAAAGACTGTTGAGTTTAACATCAAGTCTATTCCTGAGAAAAGGGAACGATATCAAGTAAAGGGTAG
GGGTAAAGTTGCTGTCAAGGCATCAAAAGTTGATGCTCATGCTGCACCTGGACCCAAGCCTATAGAGCCTAAACCACCCAAGGAAGCAGAATGTTATCACTACAAGAAAA
TTGAGCATTGGAAGAGGAACTATCCTCTTTATCTAGAAGAACTAAAGAAGAACAAGGGAAGTGTCCCTTCGACTTCAAGAACTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCATGGGATGGAGAAGAGTTTGACTAAGTTGCATGGGATGCTAAAGACTGTTGAGTTTAACATCAAGTCTATTCCTGAGAAAAGGGAACGATATCAAGTAAAGGGTAG
GGGTAAAGTTGCTGTCAAGGCATCAAAAGTTGATGCTCATGCTGCACCTGGACCCAAGCCTATAGAGCCTAAACCACCCAAGGAAGCAGAATGTTATCACTACAAGAAAA
TTGAGCATTGGAAGAGGAACTATCCTCTTTATCTAGAAGAACTAAAGAAGAACAAGGGAAGTGTCCCTTCGACTTCAAGAACTTAA
Protein sequenceShow/hide protein sequence
MHGMEKSLTKLHGMLKTVEFNIKSIPEKRERYQVKGRGKVAVKASKVDAHAAPGPKPIEPKPPKEAECYHYKKIEHWKRNYPLYLEELKKNKGSVPSTSRT