CuGenDBv2

Gene ID	PI0025607
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	coiled-coil domain-containing protein 1 isoform X3
Genome location	chr09:10126490..10128747
RNA-Seq Expression	PI0025607
Synteny	PI0025607
Gene Ontology terms	GO:0006413 - translational initiation (biological process) GO:0003743 - translation initiation factor activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0066134.1 transcription initiation factor TFIID subunit 11 isoform X3 [Cucumis melo var. makuwa]

9.1e-85

92.71

Show/hide

Query:  MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQTLRSRPSSTTAAVPRNPRSSHPHIHSDSSSR-LPPIENHVVDGE
        MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKL++DSHMSRVSPNYL SDLDRRFQ LRSRPSST AAVPRNPRSSHPHI SDSSSR  PPIEN VVDGE
Subjt:  MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQTLRSRPSSTTAAVPRNPRSSHPHIHSDSSSR-LPPIENHVVDGE

Query:  SQSILGDDLAARFAALKASLPSSTTPPSSSVPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSEEDDEEEEFISSDEDVDYRIKERRKKKAG
        SQSIL DDLAARFAALKASLPSSTTPPSSS+PNDVDS DEEDEVEKLIQWAKDAARLDPSPPSEEDDEEEEFISSDEDV+ RIKERRKKKAG
Subjt:  SQSILGDDLAARFAALKASLPSSTTPPSSSVPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSEEDDEEEEFISSDEDVDYRIKERRKKKAG

KAG7016610.1 hypothetical protein SDJN02_21720, partial [Cucurbita argyrosperma subsp. argyrosperma]

4.0e-72

82.81

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Query:  KKTGRGNDDEQEQIEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQTLRSRPSSTTAAVPRNPRSSHPHIHSDSSSRLPPIENHVVDGESQSIL
        +K G GN+D  EQ+EQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQ LRSRPSS+ AA  RNPR S PH  SDSSSR PPIEN VVDGESQSIL
Subjt:  KKTGRGNDDEQEQIEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQTLRSRPSSTTAAVPRNPRSSHPHIHSDSSSRLPPIENHVVDGESQSIL

Query:  GDDLAARFAALKASLPSSTTPPSSSVPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSEEDDE------EEEFISSDEDVDYRIKERRKKKA
        GDDLAARFAALKASLPSS TPP SS+PNDVDS+DEEDEVEKLIQWAKDAARLDPSPPSEEDDE      +EEF SSDED+D R KERRKKKA
Subjt:  GDDLAARFAALKASLPSSTTPPSSSVPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSEEDDE------EEEFISSDEDVDYRIKERRKKKA

TYK15177.1 transcription initiation factor TFIID subunit 11 isoform X3 [Cucumis melo var. makuwa]

1.4e-85

93.23

Show/hide

Query:  MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQTLRSRPSSTTAAVPRNPRSSHPHIHSDSSSR-LPPIENHVVDGE
        MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKL++DSHMSRVSPNYL SDLDRRFQ LRSRPSST AAVPRNPRSSHPHI SDSSSR  PPIEN VVDGE
Subjt:  MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQTLRSRPSSTTAAVPRNPRSSHPHIHSDSSSR-LPPIENHVVDGE

Query:  SQSILGDDLAARFAALKASLPSSTTPPSSSVPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSEEDDEEEEFISSDEDVDYRIKERRKKKAG
        SQSILGDDLAARFAALKASLPSSTTPPSSS+PNDVDS DEEDEVEKLIQWAKDAARLDPSPPSEEDDEEEEFISSDEDV+ RIKERRKKKAG
Subjt:  SQSILGDDLAARFAALKASLPSSTTPPSSSVPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSEEDDEEEEFISSDEDVDYRIKERRKKKAG

XP_004150191.1 uncharacterized protein LOC101219995 [Cucumis sativus]

5.0e-75

85.94

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Query:  MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQTLRSRPSSTTAAVPRNPRSSHPHIHSDSSSR-LPPIENHVVDGE
        MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLS+DSHMSRVSPNYLDSDLDRRFQ LRSRP          PRSSHPHI SDSS +  PPIEN VVDGE
Subjt:  MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQTLRSRPSSTTAAVPRNPRSSHPHIHSDSSSR-LPPIENHVVDGE

Query:  SQSILGDDLAARFAALKASLPSSTTPPSSSVPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSEEDDEEEEFISSDEDVDYRIKERRKKKAG
        SQSILGDDLAARFAALKASLPSS  P SSS+PND DSEDEEDEVEKLIQWAKDAARLDPSPPSEE DEEEEF SSDEDVD RIKERRKKK G
Subjt:  SQSILGDDLAARFAALKASLPSSTTPPSSSVPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSEEDDEEEEFISSDEDVDYRIKERRKKKAG

XP_016903615.1 PREDICTED: uncharacterized protein LOC103502866 [Cucumis melo]

9.1e-85

92.19

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Query:  MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQTLRSRPSSTTAAVPRNPRSSHPHIHSDSSSR-LPPIENHVVDGE
        MDSRKKTGRGNDDEQEQIEQLLQAAQDDL+LKL++DSHMSRVSPNYL SDLDRRFQ LRSRPSST AAVPRNPRSSHPHI SDSSSR  PPIEN VVDGE
Subjt:  MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQTLRSRPSSTTAAVPRNPRSSHPHIHSDSSSR-LPPIENHVVDGE

Query:  SQSILGDDLAARFAALKASLPSSTTPPSSSVPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSEEDDEEEEFISSDEDVDYRIKERRKKKAG
        SQSILGDDLAARFAALKASLPSSTTPPSSS+PNDVDS DEEDEVEKLIQWAKDAARLDPSPPSEEDDEEEEFISSDEDV+ R+KERRKKKAG
Subjt:  SQSILGDDLAARFAALKASLPSSTTPPSSSVPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSEEDDEEEEFISSDEDVDYRIKERRKKKAG

TrEMBL top hits

e value

%identity

Alignment

A0A1S4E6L5 uncharacterized protein LOC103502866

4.4e-85

92.19

Show/hide

Query:  MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQTLRSRPSSTTAAVPRNPRSSHPHIHSDSSSR-LPPIENHVVDGE
        MDSRKKTGRGNDDEQEQIEQLLQAAQDDL+LKL++DSHMSRVSPNYL SDLDRRFQ LRSRPSST AAVPRNPRSSHPHI SDSSSR  PPIEN VVDGE
Subjt:  MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQTLRSRPSSTTAAVPRNPRSSHPHIHSDSSSR-LPPIENHVVDGE

Query:  SQSILGDDLAARFAALKASLPSSTTPPSSSVPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSEEDDEEEEFISSDEDVDYRIKERRKKKAG
        SQSILGDDLAARFAALKASLPSSTTPPSSS+PNDVDS DEEDEVEKLIQWAKDAARLDPSPPSEEDDEEEEFISSDEDV+ R+KERRKKKAG
Subjt:  SQSILGDDLAARFAALKASLPSSTTPPSSSVPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSEEDDEEEEFISSDEDVDYRIKERRKKKAG

A0A5A7VFP6 Transcription initiation factor TFIID subunit 11 isoform X3

4.4e-85

92.71

Show/hide

Query:  MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQTLRSRPSSTTAAVPRNPRSSHPHIHSDSSSR-LPPIENHVVDGE
        MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKL++DSHMSRVSPNYL SDLDRRFQ LRSRPSST AAVPRNPRSSHPHI SDSSSR  PPIEN VVDGE
Subjt:  MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQTLRSRPSSTTAAVPRNPRSSHPHIHSDSSSR-LPPIENHVVDGE

Query:  SQSILGDDLAARFAALKASLPSSTTPPSSSVPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSEEDDEEEEFISSDEDVDYRIKERRKKKAG
        SQSIL DDLAARFAALKASLPSSTTPPSSS+PNDVDS DEEDEVEKLIQWAKDAARLDPSPPSEEDDEEEEFISSDEDV+ RIKERRKKKAG
Subjt:  SQSILGDDLAARFAALKASLPSSTTPPSSSVPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSEEDDEEEEFISSDEDVDYRIKERRKKKAG

A0A5D3CTC3 Transcription initiation factor TFIID subunit 11 isoform X3

6.8e-86

93.23

Show/hide

Query:  MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQTLRSRPSSTTAAVPRNPRSSHPHIHSDSSSR-LPPIENHVVDGE
        MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKL++DSHMSRVSPNYL SDLDRRFQ LRSRPSST AAVPRNPRSSHPHI SDSSSR  PPIEN VVDGE
Subjt:  MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQTLRSRPSSTTAAVPRNPRSSHPHIHSDSSSR-LPPIENHVVDGE

Query:  SQSILGDDLAARFAALKASLPSSTTPPSSSVPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSEEDDEEEEFISSDEDVDYRIKERRKKKAG
        SQSILGDDLAARFAALKASLPSSTTPPSSS+PNDVDS DEEDEVEKLIQWAKDAARLDPSPPSEEDDEEEEFISSDEDV+ RIKERRKKKAG
Subjt:  SQSILGDDLAARFAALKASLPSSTTPPSSSVPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSEEDDEEEEFISSDEDVDYRIKERRKKKAG

A0A6J1FGM0 nucleolin

1.8e-70

83.42

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Query:  MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQTLRSRPSSTTAAVPRNPRSSHPHIHSDSSSRLPPIENHVVDGES
        MD RK    GN+D  EQ+EQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQ LRSRPSS  AA  RNPR S PH  SDSSSR PPIEN VVDGES
Subjt:  MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQTLRSRPSSTTAAVPRNPRSSHPHIHSDSSSRLPPIENHVVDGES

Query:  QSILGDDLAARFAALKASLPSSTTPPSSSVPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSEEDDE---EEEFISSDEDVDYRIKERRKKKA
        QSILGDDLAARFAALKASLPSS TPP SS+PNDVDS+DEEDEVEKLIQWAKDAARLDPSPPSEEDDE   +EEF SSDED+D R KERRKKKA
Subjt:  QSILGDDLAARFAALKASLPSSTTPPSSSVPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSEEDDE---EEEFISSDEDVDYRIKERRKKKA

A0A6J1JTW4 glucosidase 2 subunit beta

2.3e-70

82.29

Show/hide

Query:  KKTGRGNDDEQEQIEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQTLRSRPSSTTAAVPRNPRSSHPHIHSDSSSRLPPIENHVVDGESQSIL
        +K G GN+D  EQ+EQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQ LRSRPSS  AA  RNPR+S PH  SDSSSR PPIEN VVDGESQSIL
Subjt:  KKTGRGNDDEQEQIEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQTLRSRPSSTTAAVPRNPRSSHPHIHSDSSSRLPPIENHVVDGESQSIL

Query:  GDDLAARFAALKASLPSSTTPPSSSVPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSEEDDE------EEEFISSDEDVDYRIKERRKKKA
        GDDLAARFAALKASLPSS TPP SS+PNDVDS+DEEDEVEKLIQWAKDA RLDPSPPSEEDDE      +EEF SSDED+D R KERRKKKA
Subjt:  GDDLAARFAALKASLPSSTTPPSSSVPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSEEDDE------EEEFISSDEDVDYRIKERRKKKA

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G24370.1 unknown protein

5.2e-22

42.86

Show/hide

Query:  RGNDDEQEQIEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQTLRSRPSSTTAAVPRNPRSSHPHIHSDSSSRLPPIENHVVDGESQSILGDDL
        R    E++++EQLLQAAQD+++LKLSVDSH SR S +YLD DL  RF  L+S+            +            R+ P    VV+        +DL
Subjt:  RGNDDEQEQIEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQTLRSRPSSTTAAVPRNPRSSHPHIHSDSSSRLPPIENHVVDGESQSILGDDL

Query:  AARFAALKASLPSSTTPPS----SSVPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSEEDDEEEEFISSDEDVD
          RFAALK SLPS+++  S      +  D D   E+ EV+KLIQWA DAARLDPSP S  DDE+ +   SD++ D
Subjt:  AARFAALKASLPSSTTPPS----SSVPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSEEDDEEEEFISSDEDVD

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGATTCGAGAAAGAAGACGGGAAGAGGCAACGACGACGAACAAGAACAAATCGAACAATTGTTACAAGCAGCTCAAGACGATCTAATGCTGAAATTGAGTGTCGATTC
TCACATGTCCCGTGTTTCCCCAAACTATCTCGATTCCGATCTCGATCGCCGTTTCCAAACCCTAAGATCGCGTCCTTCCTCCACCACCGCCGCCGTTCCCCGCAATCCTC
GGTCTTCTCACCCGCATATTCACTCCGATTCCTCATCCCGACTGCCGCCGATTGAAAATCACGTCGTCGATGGCGAATCTCAGTCCATTCTCGGCGACGATCTTGCTGCT
AGATTCGCTGCTCTGAAGGCGTCTTTGCCTTCCTCGACTACTCCGCCTTCATCCTCGGTACCTAATGATGTTGATAGCGAGGACGAAGAAGATGAGGTTGAGAAGCTGAT
TCAGTGGGCTAAGGATGCCGCTCGACTCGATCCTTCGCCTCCATCTGAGGAAGACGATGAAGAAGAGGAGTTCATTAGTTCCGATGAAGATGTCGACTATCGGATAAAAG
AGCGGCGGAAAAAGAAGGCCGGATGA

mRNA sequence

Show/hide mRNA sequence

GGGAAATTCAAAATTTTGAAAAAGTGGGCCAATAACCATTTTAAACTTCGAAATTGAGTTTTTACTTTTTATACCATTATCTATAGAAAAAGGGTATTTTTAACAAAATT
GCTAAAAATCAACCCAAAAAAAAGGGAAGAATGGATTCGAGAAAGAAGACGGGAAGAGGCAACGACGACGAACAAGAACAAATCGAACAATTGTTACAAGCAGCTCAAGA
CGATCTAATGCTGAAATTGAGTGTCGATTCTCACATGTCCCGTGTTTCCCCAAACTATCTCGATTCCGATCTCGATCGCCGTTTCCAAACCCTAAGATCGCGTCCTTCCT
CCACCACCGCCGCCGTTCCCCGCAATCCTCGGTCTTCTCACCCGCATATTCACTCCGATTCCTCATCCCGACTGCCGCCGATTGAAAATCACGTCGTCGATGGCGAATCT
CAGTCCATTCTCGGCGACGATCTTGCTGCTAGATTCGCTGCTCTGAAGGCGTCTTTGCCTTCCTCGACTACTCCGCCTTCATCCTCGGTACCTAATGATGTTGATAGCGA
GGACGAAGAAGATGAGGTTGAGAAGCTGATTCAGTGGGCTAAGGATGCCGCTCGACTCGATCCTTCGCCTCCATCTGAGGAAGACGATGAAGAAGAGGAGTTCATTAGTT
CCGATGAAGATGTCGACTATCGGATAAAAGAGCGGCGGAAAAAGAAGGCCGGATGAGCGTTGATTGAAACTGCTGTCTGTTTGTGCATTATTCGATTCACTGATTTTGGG
GGATTTAGAAACTGGAGATTCGCTCATTGGATAGATACAGTCCGGATTTTGGTTGAACTAGATCGTGATTCATGATAACGTAAGCCTCTCCGGCGCGGCGTTGAAACGCT
GAATCTTCAAATTACAGGTTAAAGTAAGTACGTTGTCTGTTCTTCACTCAATCAATTTAGTATTATTTGATACAATAATTAATAAGTTTTATTTGAAATGAAAAGAAAAC
TTAAATATTTATTTTACAATGAATCTGTTCTGTTGCCATCTCAATGCTTAATGGTAAAAATCAAACTTTTGAAGTAGGAAAATTTACCTAAACATATTCACGATATTTCA
TATAATCTAATCTTTATTATATTTGCGATAACCAAGATCGTTGAAAATCATATTAATTAATTTTTTAATTTTTAATTTTATGTTTTTTATTACACTATGTTGAGTATATA
AATATATATTGTATTTAAGATGATTCCATGATTTGAACTTTGGAAGTTCATTAAAAGCTATAAGTCTTTTAGTGGGGCGTTGCAAATATGCTCCGATTCACTTGTAAACT
AACAAAACCCTAACTTTCTCTCTCTTTTTTTTTTTTAGAGATAAATCAGATCTCATTCAAAAAATAAATAAGTGATCTTAAATTTGATTTAACAAACCTAAACTAATTTA
AAACTTTTATAAAATTCCTATAGGAATATTTTTTAATAATGTATTTTTAAAAAATAATTACAAAAATAGGGTAAGAGGGAAAAAAATGGTCAAAAATAGAGTAGAAAAAA
ATTCCTATAGGTACACGATTATGCTAAATCGTGGACCTGATTCACGTGTGATTAGAGTCGTGGACTGGGTACCCGACTCCGCTCACATGTATCCCTACTGGCAATCAACG
CTACAGTTGACTGCCACATTTGTTCGACATGATGGAAGTTGTGTACCAGTACACGACTTCGACCTAGCCGCCGATCCTTCTACCTTCCATCTTGCCTTCTACCTTCCTTC
AATCTTCACGAAAACCTTCCATCCTTCATAAAAATTTAGCAATCCTTCCATCCTTCACGAAAAATCAACGACCAAGAGCCTCCATTCCAGTCGGCCTTCACGAAAAAAGT
CTCCCTTCCTTTTTGTTTTGCCCTCCAATTTTGTCGTCACAAGGTATATTTTATTTCCTTGTATGGTTTTATTATTTAACTAAGTCGTAAACCTGATACATGATTTTGTT
GTAAAAATAATTTAATTTAGGTTTGTTATTTGATTTTAGCAAAAATTATTTGATTTTGTTGTAAAAATAATCGAAATTAAGGTTTGTTATTTGATTTTAGTTATATTATT
TTATTTTAGGGCTAAAAATTATTTGATTTTAGGTATGTTATTGTATTAATTAGGCATTATACAGATGTAATTTAGGCATACGTAGAGTTTGAATTTGGGTATTGAATTAT
TAGACTTTGTTTAATTAGAGTAATCCCTTATGGTGGTTTTAGATATTTAACAACTAAT

Protein sequence

Show/hide protein sequence

MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQTLRSRPSSTTAAVPRNPRSSHPHIHSDSSSRLPPIENHVVDGESQSILGDDLAA
RFAALKASLPSSTTPPSSSVPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSEEDDEEEEFISSDEDVDYRIKERRKKKAG

PI0025607 (gene) of Melon (PI 482460) v1 genome