CuGenDBv2

Gene ID	PI0025620
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	protein LOW PSII ACCUMULATION 1, chloroplastic
Genome location	chr07:635129..640557
RNA-Seq Expression	PI0025620
Synteny	PI0025620
Gene Ontology terms	GO:0010270 - photosystem II oxygen evolving complex assembly (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR011990 - Tetratricopeptide-like helical domain superfamily IPR019734 - Tetratricopeptide repeat IPR021883 - Protein LOW PSII ACCUMULATION 1-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004152258.2 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucumis sativus]

2.8e-235

97.24

Show/hide

Query:  MAMPTLPLFHHLPTLSNPKSPTFLRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA
        MAM TLPLFHHLPTLSNPKS T LRPRLPTSQRTF LSILSCSSTSQSPEANLQSAESCVN GLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA
Subjt:  MAMPTLPLFHHLPTLSNPKSPTFLRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA

Query:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI
        CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVR+FFYVALSAAAGISLLFNI
Subjt:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI

Query:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
        PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
Subjt:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER

Query:  FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPAT-AAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIIL
        FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAP T AAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIR+QQ+SEGVTPGEDVYIIL
Subjt:  FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPAT-AAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIIL

Query:  RLDGRVRRSGRGMPDWQKIIEELPPIEALLSKLER
        RLDGRVRRSGRGMPDWQKIIEELPP+EALLSKLE+
Subjt:  RLDGRVRRSGRGMPDWQKIIEELPPIEALLSKLER

XP_008454363.1 PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1 [Cucumis melo]

1.9e-239

98.16

Show/hide

Query:  MAMPTLPLFHHLPTLSNPKSPTFLRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA
        MAM TLPLFHHLPTLSNPKSPT LRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAA YNKA
Subjt:  MAMPTLPLFHHLPTLSNPKSPTFLRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA

Query:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI
        CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI
Subjt:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI

Query:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
        PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
Subjt:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER

Query:  FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPATAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILR
        FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPA AA ALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILR
Subjt:  FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPATAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILR

Query:  LDGRVRRSGRGMPDWQKIIEELPPIEALLSKLER
        LDGR+RRSGRGMPDWQKIIEELPP+EALLSKLE+
Subjt:  LDGRVRRSGRGMPDWQKIIEELPPIEALLSKLER

XP_022143429.1 protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1 [Momordica charantia]

2.5e-223

91.1

Show/hide

Query:  MAMPTLPLFHHLPTLSNPKSPTFLRPRLPTS----QRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAAL
        MA+ TLPL+HHL   SNPKS T LRPRLPTS     + FHLSI  CSSTSQSPEAN+++AESCVNLGLQLFSKGRVKEALVQF+AALN+DPNP+EAQAA 
Subjt:  MAMPTLPLFHHLPTLSNPKSPTFLRPRLPTS----QRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAAL

Query:  YNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISL
        YNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEAR+GGEDIGYGFRRDLKLISEVQAPFRGVR+FFYVALSAAAGISL
Subjt:  YNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISL

Query:  LFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQ
        LF IPRLFRAIQGGD APDVWETAGNLAVN+GGIIV VALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQ
Subjt:  LFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQ

Query:  KAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPATAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVY
        KAERFRTELLRRGVLLVPV+WGEGREPQIEK+GFGAP  A A LPSIGEDFEKRAQSITAKSKLKAEIRFRAEV+SPAEWESWIRDQQKSEGVTPGEDVY
Subjt:  KAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPATAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVY

Query:  IILRLDGRVRRSGRGMPDWQKIIEELPPIEALLSKLER
        IILRLDGRVRRSGRGMPDW KIIEELPP+EALLSKLER
Subjt:  IILRLDGRVRRSGRGMPDWQKIIEELPPIEALLSKLER

XP_022983449.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita maxima]

1.6e-222

91.99

Show/hide

Query:  MAMPTLPLFHHLPTLSNPKSPTFLRPRLPT--SQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYN
        + M TLP+FH L TLSNPKS T LR RLPT  SQR FH+SIL CSSTSQSPE N++SAES VNLGLQLFSKGRVKEALVQFEAAL+M+PNPMEAQAALYN
Subjt:  MAMPTLPLFHHLPTLSNPKSPTFLRPRLPT--SQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYN

Query:  KACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLF
        KACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLF
Subjt:  KACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLF

Query:  NIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKA
        N+PRLFRAIQGG+ APDVWET GNLAVNVGGI+VFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNR+VELVQLRDTVRPVILAGKKETVSSAIQKA
Subjt:  NIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKA

Query:  ERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPATA-AAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYI
        ERFRTELLRRGVLLVPVIW EGREP++EKKGFGAPA A +AALPSIGEDFEKRAQSITAKSKLKAEIRFRA+VISPAEWESWIRDQQKSEGVTPGEDVYI
Subjt:  ERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPATA-AAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYI

Query:  ILRLDGRVRRSGRGMPDWQKIIEELPPIEALLSKLER
        ILRLDGRVRRSGRGMPDWQKIIEELPP++ALLSKLER
Subjt:  ILRLDGRVRRSGRGMPDWQKIIEELPPIEALLSKLER

XP_038905239.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Benincasa hispida]

7.3e-231

95.62

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Query:  MAMPTLPLFHHLPTLSNPKSPTFLRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA
        MAM TLPLFHHL T S+PKS T LRPRL TSQR FH+SIL  SSTSQSPEANL+SAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA
Subjt:  MAMPTLPLFHHLPTLSNPKSPTFLRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA

Query:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI
        CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFF VALSAAAGISLLFNI
Subjt:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI

Query:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
        PRLFRAIQGGDGAPDVWETAGNLAVNVGGI+VFVALFLWDNKKEEEQL+QISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
Subjt:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER

Query:  FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPATAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILR
        FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPAT AAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEV+SPAEWESWIRDQQKSE VTPGEDVYIILR
Subjt:  FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPATAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILR

Query:  LDGRVRRSGRGMPDWQKIIEELPPIEALLSKLER
        LDGRVRRSGRGMPDWQKIIEELPP+EALLSKLER
Subjt:  LDGRVRRSGRGMPDWQKIIEELPPIEALLSKLER

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KT96 TPR_REGION domain-containing protein

1.4e-235

97.24

Show/hide

Query:  MAMPTLPLFHHLPTLSNPKSPTFLRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA
        MAM TLPLFHHLPTLSNPKS T LRPRLPTSQRTF LSILSCSSTSQSPEANLQSAESCVN GLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA
Subjt:  MAMPTLPLFHHLPTLSNPKSPTFLRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA

Query:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI
        CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVR+FFYVALSAAAGISLLFNI
Subjt:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI

Query:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
        PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
Subjt:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER

Query:  FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPAT-AAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIIL
        FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAP T AAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIR+QQ+SEGVTPGEDVYIIL
Subjt:  FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPAT-AAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIIL

Query:  RLDGRVRRSGRGMPDWQKIIEELPPIEALLSKLER
        RLDGRVRRSGRGMPDWQKIIEELPP+EALLSKLE+
Subjt:  RLDGRVRRSGRGMPDWQKIIEELPPIEALLSKLER

A0A1S3BYE8 protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1

9.2e-240

98.16

Show/hide

Query:  MAMPTLPLFHHLPTLSNPKSPTFLRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA
        MAM TLPLFHHLPTLSNPKSPT LRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAA YNKA
Subjt:  MAMPTLPLFHHLPTLSNPKSPTFLRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA

Query:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI
        CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI
Subjt:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI

Query:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
        PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
Subjt:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER

Query:  FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPATAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILR
        FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPA AA ALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILR
Subjt:  FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPATAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILR

Query:  LDGRVRRSGRGMPDWQKIIEELPPIEALLSKLER
        LDGR+RRSGRGMPDWQKIIEELPP+EALLSKLE+
Subjt:  LDGRVRRSGRGMPDWQKIIEELPPIEALLSKLER

A0A5A7TR76 Protein LOW PSII ACCUMULATION 1

9.2e-240

98.16

Show/hide

Query:  MAMPTLPLFHHLPTLSNPKSPTFLRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA
        MAM TLPLFHHLPTLSNPKSPT LRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAA YNKA
Subjt:  MAMPTLPLFHHLPTLSNPKSPTFLRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA

Query:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI
        CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI
Subjt:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI

Query:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
        PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
Subjt:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER

Query:  FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPATAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILR
        FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPA AA ALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILR
Subjt:  FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPATAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILR

Query:  LDGRVRRSGRGMPDWQKIIEELPPIEALLSKLER
        LDGR+RRSGRGMPDWQKIIEELPP+EALLSKLE+
Subjt:  LDGRVRRSGRGMPDWQKIIEELPPIEALLSKLER

A0A6J1CPA1 protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1

1.2e-223

91.1

Show/hide

Query:  MAMPTLPLFHHLPTLSNPKSPTFLRPRLPTS----QRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAAL
        MA+ TLPL+HHL   SNPKS T LRPRLPTS     + FHLSI  CSSTSQSPEAN+++AESCVNLGLQLFSKGRVKEALVQF+AALN+DPNP+EAQAA 
Subjt:  MAMPTLPLFHHLPTLSNPKSPTFLRPRLPTS----QRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAAL

Query:  YNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISL
        YNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEAR+GGEDIGYGFRRDLKLISEVQAPFRGVR+FFYVALSAAAGISL
Subjt:  YNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISL

Query:  LFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQ
        LF IPRLFRAIQGGD APDVWETAGNLAVN+GGIIV VALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQ
Subjt:  LFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQ

Query:  KAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPATAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVY
        KAERFRTELLRRGVLLVPV+WGEGREPQIEK+GFGAP  A A LPSIGEDFEKRAQSITAKSKLKAEIRFRAEV+SPAEWESWIRDQQKSEGVTPGEDVY
Subjt:  KAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPATAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVY

Query:  IILRLDGRVRRSGRGMPDWQKIIEELPPIEALLSKLER
        IILRLDGRVRRSGRGMPDW KIIEELPP+EALLSKLER
Subjt:  IILRLDGRVRRSGRGMPDWQKIIEELPPIEALLSKLER

A0A6J1J7F4 protein LOW PSII ACCUMULATION 1, chloroplastic

7.8e-223

91.99

Show/hide

Query:  MAMPTLPLFHHLPTLSNPKSPTFLRPRLPT--SQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYN
        + M TLP+FH L TLSNPKS T LR RLPT  SQR FH+SIL CSSTSQSPE N++SAES VNLGLQLFSKGRVKEALVQFEAAL+M+PNPMEAQAALYN
Subjt:  MAMPTLPLFHHLPTLSNPKSPTFLRPRLPT--SQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYN

Query:  KACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLF
        KACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLF
Subjt:  KACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLF

Query:  NIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKA
        N+PRLFRAIQGG+ APDVWET GNLAVNVGGI+VFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNR+VELVQLRDTVRPVILAGKKETVSSAIQKA
Subjt:  NIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKA

Query:  ERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPATA-AAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYI
        ERFRTELLRRGVLLVPVIW EGREP++EKKGFGAPA A +AALPSIGEDFEKRAQSITAKSKLKAEIRFRA+VISPAEWESWIRDQQKSEGVTPGEDVYI
Subjt:  ERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPATA-AAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYI

Query:  ILRLDGRVRRSGRGMPDWQKIIEELPPIEALLSKLER
        ILRLDGRVRRSGRGMPDWQKIIEELPP++ALLSKLER
Subjt:  ILRLDGRVRRSGRGMPDWQKIIEELPPIEALLSKLER

SwissProt top hits

e value

%identity

Alignment

Q9SRY4 Protein LOW PSII ACCUMULATION 1, chloroplastic

3.8e-174

70.2

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Query:  MAMPTLP-LFHHLP-TLSNPKSPT-FLRPRLPTSQRTF---------HLSILSCSSTSQS---PEANLQ----SAESCVNLGLQLFSKGRVKEALVQFEA
        MA+ T P L  H P  +SN  S     RP LP    T          HL + + SS+S S   P  N      +AE CVN GL LF +GRVK+ALVQFE 
Subjt:  MAMPTLP-LFHHLP-TLSNPKSPT-FLRPRLPTSQRTF---------HLSILSCSSTSQS---PEANLQ----SAESCVNLGLQLFSKGRVKEALVQFEA

Query:  ALNMDPNPMEAQAALYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVR
        AL++ PNP+E+QAA YNKACCHAYRGEGKKA DCLR+ALR+YNLKF TILNDPDLASFRALPEFKELQEEAR+GGEDIG  FRRDLKLISEV+APFRGVR
Subjt:  ALNMDPNPMEAQAALYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVR

Query:  RFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRP
        +FFY A +AAAGIS+ F +PRL +AI+GGDGAP++ ET GN A+N+GGI+V V+LFLW+NKKEEEQ+ QI+R+ETLSRLPLRLSTNR+VELVQLRDTVRP
Subjt:  RFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRP

Query:  VILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPATAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIR
        VILAGKKETV+ A+QKA+RFRTELLRRGVLLVPV+WGE + P+IEKKGFGA + AA +LPSIGEDF+ RAQS+ A+SKLK EIRF+AE +SP EWE WIR
Subjt:  VILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPATAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIR

Query:  DQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPIEALLSKLER
        DQQ SEGV PG+DVYIILRLDGRVRRSGRGMPDW +I +ELPP++ +LSKLER
Subjt:  DQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPIEALLSKLER

Arabidopsis top hits

e value

%identity

Alignment

AT1G02910.1 tetratricopeptide repeat (TPR)-containing protein

2.7e-175

70.2

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Query:  MAMPTLP-LFHHLP-TLSNPKSPT-FLRPRLPTSQRTF---------HLSILSCSSTSQS---PEANLQ----SAESCVNLGLQLFSKGRVKEALVQFEA
        MA+ T P L  H P  +SN  S     RP LP    T          HL + + SS+S S   P  N      +AE CVN GL LF +GRVK+ALVQFE 
Subjt:  MAMPTLP-LFHHLP-TLSNPKSPT-FLRPRLPTSQRTF---------HLSILSCSSTSQS---PEANLQ----SAESCVNLGLQLFSKGRVKEALVQFEA

Query:  ALNMDPNPMEAQAALYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVR
        AL++ PNP+E+QAA YNKACCHAYRGEGKKA DCLR+ALR+YNLKF TILNDPDLASFRALPEFKELQEEAR+GGEDIG  FRRDLKLISEV+APFRGVR
Subjt:  ALNMDPNPMEAQAALYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVR

Query:  RFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRP
        +FFY A +AAAGIS+ F +PRL +AI+GGDGAP++ ET GN A+N+GGI+V V+LFLW+NKKEEEQ+ QI+R+ETLSRLPLRLSTNR+VELVQLRDTVRP
Subjt:  RFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRP

Query:  VILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPATAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIR
        VILAGKKETV+ A+QKA+RFRTELLRRGVLLVPV+WGE + P+IEKKGFGA + AA +LPSIGEDF+ RAQS+ A+SKLK EIRF+AE +SP EWE WIR
Subjt:  VILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPATAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIR

Query:  DQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPIEALLSKLER
        DQQ SEGV PG+DVYIILRLDGRVRRSGRGMPDW +I +ELPP++ +LSKLER
Subjt:  DQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPIEALLSKLER

AT4G28740.1 FUNCTIONS IN: molecular_function unknown

2.3e-33

31.72

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Query:  DLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRL-
        D ++ SEV +PFR VR FFY+A  A+  +  L    RL  A+     + +V E    L V++G   +F  L+  +NK +  Q+A++SR E L +L +R+ 
Subjt:  DLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRL-

Query:  STNRIVELVQLRDTVRPVILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPATAAAALPSIGEDFEKRAQSITAKSKLKAEI
          N+++ +  LR   R VI AG  E +  A ++++ +   L+ RGV++V     +G  P +E   F     A        E+  +R + +          
Subjt:  STNRIVELVQLRDTVRPVILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPATAAAALPSIGEDFEKRAQSITAKSKLKAEI

Query:  RFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPIEALLSKL
         +R   +   EWE W+ +Q+K   V+    VY+ LRLDGRVR SG G P WQ  + +LPP++ + + L
Subjt:  RFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPIEALLSKL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCTATGCCTACTCTTCCCCTGTTCCACCACCTCCCCACCCTTTCAAACCCCAAATCACCCACCTTTCTCAGGCCCCGGTTACCCACTTCTCAAAGAACTTTCCATCT
CTCTATTCTCTCTTGCTCTTCTACTTCCCAGTCCCCTGAAGCTAATCTCCAATCTGCAGAGTCCTGTGTCAATCTCGGTCTCCAGCTCTTCTCTAAAGGACGGGTCAAAG
AAGCTTTGGTCCAGTTTGAAGCAGCTCTGAATATGGATCCCAACCCAATGGAGGCTCAAGCTGCTTTGTACAATAAAGCATGTTGTCATGCCTATCGTGGGGAAGGAAAG
AAAGCTGCTGACTGTCTGCGTGTCGCATTAAGAGAATATAACCTGAAATTTGGCACGATTCTGAATGATCCTGACTTGGCCTCATTCAGAGCTCTTCCTGAATTCAAGGA
ATTGCAAGAAGAGGCTAGGATGGGAGGAGAGGATATAGGATACGGTTTTCGAAGAGATCTTAAACTCATTAGTGAAGTTCAAGCACCTTTTCGTGGGGTTCGGAGGTTCT
TTTATGTGGCACTATCTGCAGCAGCTGGAATTTCATTGCTGTTTAACATACCCAGGTTATTTCGTGCTATTCAAGGTGGTGATGGAGCTCCTGATGTTTGGGAAACTGCT
GGAAATTTAGCTGTTAATGTTGGAGGTATTATTGTTTTTGTGGCATTATTTTTATGGGACAACAAGAAAGAAGAGGAACAGCTTGCACAAATATCAAGAAATGAAACATT
ATCGAGGTTGCCTCTACGTCTTTCCACCAATCGGATTGTTGAACTTGTACAGCTTCGAGATACTGTAAGACCGGTCATTTTAGCTGGGAAAAAGGAGACTGTTTCTTCAG
CCATTCAGAAGGCAGAAAGGTTCAGAACTGAGCTCCTTAGACGAGGTGTGCTCTTAGTTCCTGTCATATGGGGTGAAGGTAGGGAACCCCAAATAGAAAAGAAAGGGTTT
GGTGCTCCAGCCACCGCTGCTGCTGCTCTGCCATCTATTGGGGAAGATTTTGAGAAACGAGCTCAGTCTATAACTGCAAAATCGAAGTTGAAAGCTGAAATTCGATTCAG
GGCTGAGGTTATATCACCTGCAGAATGGGAAAGTTGGATAAGAGACCAGCAGAAATCCGAAGGGGTTACCCCTGGTGAGGATGTCTACATAATATTGCGATTGGATGGTC
GAGTTCGAAGATCAGGGAGAGGGATGCCTGACTGGCAAAAAATTATTGAAGAGTTACCACCAATTGAAGCTCTTCTAAGCAAGCTAGAAAGATGA

mRNA sequence

Show/hide mRNA sequence

TTTTTATTTTCGGCCATGTGAGCGTGAGGTCTCCAAACTCCCCAGCTAAACTCTCCAATGGCTATGCCTACTCTTCCCCTGTTCCACCACCTCCCCACCCTTTCAAACCC
CAAATCACCCACCTTTCTCAGGCCCCGGTTACCCACTTCTCAAAGAACTTTCCATCTCTCTATTCTCTCTTGCTCTTCTACTTCCCAGTCCCCTGAAGCTAATCTCCAAT
CTGCAGAGTCCTGTGTCAATCTCGGTCTCCAGCTCTTCTCTAAAGGACGGGTCAAAGAAGCTTTGGTCCAGTTTGAAGCAGCTCTGAATATGGATCCCAACCCAATGGAG
GCTCAAGCTGCTTTGTACAATAAAGCATGTTGTCATGCCTATCGTGGGGAAGGAAAGAAAGCTGCTGACTGTCTGCGTGTCGCATTAAGAGAATATAACCTGAAATTTGG
CACGATTCTGAATGATCCTGACTTGGCCTCATTCAGAGCTCTTCCTGAATTCAAGGAATTGCAAGAAGAGGCTAGGATGGGAGGAGAGGATATAGGATACGGTTTTCGAA
GAGATCTTAAACTCATTAGTGAAGTTCAAGCACCTTTTCGTGGGGTTCGGAGGTTCTTTTATGTGGCACTATCTGCAGCAGCTGGAATTTCATTGCTGTTTAACATACCC
AGGTTATTTCGTGCTATTCAAGGTGGTGATGGAGCTCCTGATGTTTGGGAAACTGCTGGAAATTTAGCTGTTAATGTTGGAGGTATTATTGTTTTTGTGGCATTATTTTT
ATGGGACAACAAGAAAGAAGAGGAACAGCTTGCACAAATATCAAGAAATGAAACATTATCGAGGTTGCCTCTACGTCTTTCCACCAATCGGATTGTTGAACTTGTACAGC
TTCGAGATACTGTAAGACCGGTCATTTTAGCTGGGAAAAAGGAGACTGTTTCTTCAGCCATTCAGAAGGCAGAAAGGTTCAGAACTGAGCTCCTTAGACGAGGTGTGCTC
TTAGTTCCTGTCATATGGGGTGAAGGTAGGGAACCCCAAATAGAAAAGAAAGGGTTTGGTGCTCCAGCCACCGCTGCTGCTGCTCTGCCATCTATTGGGGAAGATTTTGA
GAAACGAGCTCAGTCTATAACTGCAAAATCGAAGTTGAAAGCTGAAATTCGATTCAGGGCTGAGGTTATATCACCTGCAGAATGGGAAAGTTGGATAAGAGACCAGCAGA
AATCCGAAGGGGTTACCCCTGGTGAGGATGTCTACATAATATTGCGATTGGATGGTCGAGTTCGAAGATCAGGGAGAGGGATGCCTGACTGGCAAAAAATTATTGAAGAG
TTACCACCAATTGAAGCTCTTCTAAGCAAGCTAGAAAGATGAGATAAACAGAATTGACATACATACACCGTGGCAACTATCGATGGCATCACTTTTGCTACCCGTTCAAC
TTCCACACCAATATCCAGAAGAGTAAACTGTCTAGTAATACATAGTCTTAGCTAGTTGTTTTTGTAACTATAAATGTGTTTGGAGGATGGGTGATTGATCCAAACCTGAG
ACCATTCTGTTCTATTTAAATTCATGTTCCCATCTCTTTAGAGTCCAAAAGAAGATAATCTTTATGGGAATTCAATTGATTTATTTGGATTAGAGTTCGTTGTTTCTTCT
ACAATTTCTTGTTCTTTATCTATACAAATTGATTTGGATGGTTGACTCTAAAAGTATAGATAATAGCCTTGAAAGATTCAAAGAGATTAGATGGGTCATCGGGGCAATAG
ATTTTGAGTTTAAAGTAATCA

Protein sequence

Show/hide protein sequence

MAMPTLPLFHHLPTLSNPKSPTFLRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKACCHAYRGEGK
KAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETA
GNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGF
GAPATAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPIEALLSKLER

PI0025620 (gene) of Melon (PI 482460) v1 genome