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PI0025628 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0025628
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionBeta-galactosidase
Genome locationchr11:18703925..18704359
RNA-Seq ExpressionPI0025628
SyntenyPI0025628
Gene Ontology termsGO:0000723 - telomere maintenance (biological process)
GO:0032508 - DNA duplex unwinding (biological process)
GO:0016310 - phosphorylation (biological process)
GO:0015074 - DNA integration (biological process)
GO:0006116 - NADH oxidation (biological process)
GO:0006303 - double-strand break repair via nonhomologous end joining (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0043564 - Ku70:Ku80 complex (cellular component)
GO:0005525 - GTP binding (molecular function)
GO:0016301 - kinase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
GO:0003954 - NADH dehydrogenase activity (molecular function)
GO:0042162 - telomeric DNA binding (molecular function)
GO:0003684 - damaged DNA binding (molecular function)
GO:0003678 - DNA helicase activity (molecular function)
InterPro domainsIPR029472 - Retrotransposon Copia-like, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034386.1 Beta-galactosidase [Cucumis melo var. makuwa]6.7e-3267.33Show/hide
Query:  TSYVTNIVTQSIGSFSGEKVNDNNYFSWSQSVRMVLEGQHKFGFLTGEIPRPSPGDLQERYWKGEDSLLRSTLINSMEPKAGKPLLYTATAKDICDTTRT
        ++Y+T  +  S G+FSGEK+N  NYFSWSQS++M LEG+++FGFLTGEI RP PGD  ER WKGEDSL+RS LINSMEP+ GKPLLY  TAKD+ DTT+T
Subjt:  TSYVTNIVTQSIGSFSGEKVNDNNYFSWSQSVRMVLEGQHKFGFLTGEIPRPSPGDLQERYWKGEDSLLRSTLINSMEPKAGKPLLYTATAKDICDTTRT

Query:  L
        L
Subjt:  L
KAA0059996.1 putative tRNA pseudouridine synthase [Cucumis melo var. makuwa]7.9e-3356.55Show/hide
Query:  PTSSSGVAHQQLEGLRQQIAAIEASLEATPN----------TSY---VTNIVTQSIGSFSGEKVNDNNYFSWSQSVRMVLEGQHKFGFLTGEIPRPSPGD
        P S +G+   Q    R  I A E+S  + P           TS+    +N  T S+G+FSGEK+N  NYFSWSQS++M LEG+H+FGFLTGE  RPSPGD
Subjt:  PTSSSGVAHQQLEGLRQQIAAIEASLEATPN----------TSY---VTNIVTQSIGSFSGEKVNDNNYFSWSQSVRMVLEGQHKFGFLTGEIPRPSPGD

Query:  LQERYWKGEDSLLRSTLINSMEPKAGKPLLYTATAKDICDTTRTL
          ER WKGEDSL+RS LINSMEP+ GKPLLY ATAKD+ DTT+TL
Subjt:  LQERYWKGEDSLLRSTLINSMEPKAGKPLLYTATAKDICDTTRTL
TYJ97256.1 Beta-galactosidase [Cucumis melo var. makuwa]6.7e-3267.33Show/hide
Query:  TSYVTNIVTQSIGSFSGEKVNDNNYFSWSQSVRMVLEGQHKFGFLTGEIPRPSPGDLQERYWKGEDSLLRSTLINSMEPKAGKPLLYTATAKDICDTTRT
        ++Y+T  +  S G+FSGEK+N  NYFSWSQS++M LEG+++FGFLTGEI RP PGD  ER WKGEDSL+RS LINSMEP+ GKPLLY  TAKD+ DTT+T
Subjt:  TSYVTNIVTQSIGSFSGEKVNDNNYFSWSQSVRMVLEGQHKFGFLTGEIPRPSPGDLQERYWKGEDSLLRSTLINSMEPKAGKPLLYTATAKDICDTTRT

Query:  L
        L
Subjt:  L
TYJ99952.1 Beta-galactosidase [Cucumis melo var. makuwa]6.7e-3267.33Show/hide
Query:  TSYVTNIVTQSIGSFSGEKVNDNNYFSWSQSVRMVLEGQHKFGFLTGEIPRPSPGDLQERYWKGEDSLLRSTLINSMEPKAGKPLLYTATAKDICDTTRT
        ++Y+T  +  S G+FSGEK+N  NYFSWSQS++M LEG+++FGFLTGEI RP PGD  ER WKGEDSL+RS LINSMEP+ GKPLLY  TAKD+ DTT+T
Subjt:  TSYVTNIVTQSIGSFSGEKVNDNNYFSWSQSVRMVLEGQHKFGFLTGEIPRPSPGDLQERYWKGEDSLLRSTLINSMEPKAGKPLLYTATAKDICDTTRT

Query:  L
        L
Subjt:  L
TYK08054.1 Beta-galactosidase [Cucumis melo var. makuwa]6.7e-3267.33Show/hide
Query:  TSYVTNIVTQSIGSFSGEKVNDNNYFSWSQSVRMVLEGQHKFGFLTGEIPRPSPGDLQERYWKGEDSLLRSTLINSMEPKAGKPLLYTATAKDICDTTRT
        ++Y+T  +  S G+FSGEK+N  NYFSWSQS++M LEG+++FGFLTGEI RP PGD  ER WKGEDSL+RS LINSMEP+ GKPLLY  TAKD+ DTT+T
Subjt:  TSYVTNIVTQSIGSFSGEKVNDNNYFSWSQSVRMVLEGQHKFGFLTGEIPRPSPGDLQERYWKGEDSLLRSTLINSMEPKAGKPLLYTATAKDICDTTRT

Query:  L
        L
Subjt:  L
TrEMBL top hitse value%identityAlignment
A0A5A7SM64 Beta-galactosidase3.3e-3267.33Show/hide
Query:  TSYVTNIVTQSIGSFSGEKVNDNNYFSWSQSVRMVLEGQHKFGFLTGEIPRPSPGDLQERYWKGEDSLLRSTLINSMEPKAGKPLLYTATAKDICDTTRT
        ++Y+T  +  S G+FSGEK+N  NYFSWSQS++M LEG+++FGFLTGEI RP PGD  ER WKGEDSL+RS LINSMEP+ GKPLLY  TAKD+ DTT+T
Subjt:  TSYVTNIVTQSIGSFSGEKVNDNNYFSWSQSVRMVLEGQHKFGFLTGEIPRPSPGDLQERYWKGEDSLLRSTLINSMEPKAGKPLLYTATAKDICDTTRT

Query:  L
        L
Subjt:  L
A0A5A7V0I4 Putative tRNA pseudouridine synthase3.8e-3356.55Show/hide
Query:  PTSSSGVAHQQLEGLRQQIAAIEASLEATPN----------TSY---VTNIVTQSIGSFSGEKVNDNNYFSWSQSVRMVLEGQHKFGFLTGEIPRPSPGD
        P S +G+   Q    R  I A E+S  + P           TS+    +N  T S+G+FSGEK+N  NYFSWSQS++M LEG+H+FGFLTGE  RPSPGD
Subjt:  PTSSSGVAHQQLEGLRQQIAAIEASLEATPN----------TSY---VTNIVTQSIGSFSGEKVNDNNYFSWSQSVRMVLEGQHKFGFLTGEIPRPSPGD

Query:  LQERYWKGEDSLLRSTLINSMEPKAGKPLLYTATAKDICDTTRTL
          ER WKGEDSL+RS LINSMEP+ GKPLLY ATAKD+ DTT+TL
Subjt:  LQERYWKGEDSLLRSTLINSMEPKAGKPLLYTATAKDICDTTRTL
A0A5A7V0Y9 Beta-galactosidase3.3e-3267.33Show/hide
Query:  TSYVTNIVTQSIGSFSGEKVNDNNYFSWSQSVRMVLEGQHKFGFLTGEIPRPSPGDLQERYWKGEDSLLRSTLINSMEPKAGKPLLYTATAKDICDTTRT
        ++Y+T  +  S G+FSGEK+N  NYFSWSQS++M LEG+++FGFLTGEI RP PGD  ER WKGEDSL+RS LINSMEP+ GKPLLY  TAKD+ DTT+T
Subjt:  TSYVTNIVTQSIGSFSGEKVNDNNYFSWSQSVRMVLEGQHKFGFLTGEIPRPSPGDLQERYWKGEDSLLRSTLINSMEPKAGKPLLYTATAKDICDTTRT

Query:  L
        L
Subjt:  L
A0A5D3BJK7 Beta-galactosidase3.3e-3267.33Show/hide
Query:  TSYVTNIVTQSIGSFSGEKVNDNNYFSWSQSVRMVLEGQHKFGFLTGEIPRPSPGDLQERYWKGEDSLLRSTLINSMEPKAGKPLLYTATAKDICDTTRT
        ++Y+T  +  S G+FSGEK+N  NYFSWSQS++M LEG+++FGFLTGEI RP PGD  ER WKGEDSL+RS LINSMEP+ GKPLLY  TAKD+ DTT+T
Subjt:  TSYVTNIVTQSIGSFSGEKVNDNNYFSWSQSVRMVLEGQHKFGFLTGEIPRPSPGDLQERYWKGEDSLLRSTLINSMEPKAGKPLLYTATAKDICDTTRT

Query:  L
        L
Subjt:  L
A0A5D3C4T4 Beta-galactosidase3.3e-3267.33Show/hide
Query:  TSYVTNIVTQSIGSFSGEKVNDNNYFSWSQSVRMVLEGQHKFGFLTGEIPRPSPGDLQERYWKGEDSLLRSTLINSMEPKAGKPLLYTATAKDICDTTRT
        ++Y+T  +  S G+FSGEK+N  NYFSWSQS++M LEG+++FGFLTGEI RP PGD  ER WKGEDSL+RS LINSMEP+ GKPLLY  TAKD+ DTT+T
Subjt:  TSYVTNIVTQSIGSFSGEKVNDNNYFSWSQSVRMVLEGQHKFGFLTGEIPRPSPGDLQERYWKGEDSLLRSTLINSMEPKAGKPLLYTATAKDICDTTRT

Query:  L
        L
Subjt:  L
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G21280.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).8.0e-0729.59Show/hide
Query:  FSGEKV--NDNNYFSWSQSVRMVLEGQHKFGFLTGEIPRPSPGDLQERYWKGEDSLLRSTLINSMEPKAGKPLLYTATAKDIC-DTTRTLIPSVKMPL
        FS +K+  +++NY +W    R  L    KFGF+ G +P+P P     + W+  ++++   L+NSM  K  + ++Y  TA  +  D  R  +P V + +
Subjt:  FSGEKV--NDNNYFSWSQSVRMVLEGQHKFGFLTGEIPRPSPGDLQERYWKGEDSLLRSTLINSMEPKAGKPLLYTATAKDIC-DTTRTLIPSVKMPL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGACCTCTTCTTCGGGAGTAGCTCACCAACAATTGGAGGGGCTTCGACAGCAGATCGCAGCAATTGAGGCTTCTTTAGAGGCAACACCCAACACTTCTTATGTGAC
TAATATAGTGACACAGTCTATAGGGTCTTTCTCAGGGGAAAAGGTAAACGACAATAACTATTTCTCATGGTCTCAATCAGTGAGAATGGTCCTTGAAGGGCAGCATAAGT
TTGGTTTTCTGACGGGAGAAATACCTCGTCCTTCACCTGGAGACCTACAGGAACGGTACTGGAAGGGTGAGGATTCTCTTCTTCGATCCACACTGATCAATAGCATGGAG
CCAAAGGCCGGAAAGCCTTTACTATACACTGCAACTGCTAAGGATATTTGTGACACAACCCGAACATTAATTCCAAGTGTTAAAATGCCTCTTGCTGATTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCGACCTCTTCTTCGGGAGTAGCTCACCAACAATTGGAGGGGCTTCGACAGCAGATCGCAGCAATTGAGGCTTCTTTAGAGGCAACACCCAACACTTCTTATGTGAC
TAATATAGTGACACAGTCTATAGGGTCTTTCTCAGGGGAAAAGGTAAACGACAATAACTATTTCTCATGGTCTCAATCAGTGAGAATGGTCCTTGAAGGGCAGCATAAGT
TTGGTTTTCTGACGGGAGAAATACCTCGTCCTTCACCTGGAGACCTACAGGAACGGTACTGGAAGGGTGAGGATTCTCTTCTTCGATCCACACTGATCAATAGCATGGAG
CCAAAGGCCGGAAAGCCTTTACTATACACTGCAACTGCTAAGGATATTTGTGACACAACCCGAACATTAATTCCAAGTGTTAAAATGCCTCTTGCTGATTCTTAA
Protein sequenceShow/hide protein sequence
MPTSSSGVAHQQLEGLRQQIAAIEASLEATPNTSYVTNIVTQSIGSFSGEKVNDNNYFSWSQSVRMVLEGQHKFGFLTGEIPRPSPGDLQERYWKGEDSLLRSTLINSME
PKAGKPLLYTATAKDICDTTRTLIPSVKMPLADS