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PI0025643 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0025643
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr11:21153752..21154237
RNA-Seq ExpressionPI0025643
SyntenyPI0025643
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033263.1 retrotransposon protein [Cucumis melo var. makuwa]1.1e-4671.88Show/hide
Query:  MTEKLPGCTIQGTTTIDCRIKTLKRTFQAISEMRGPTCSGFGWNDEVKCIIAKKELFDNWSHPTAKGLLNKPFPYYDELSYVFGKDRAIGQHAEMFANVC
        M EKLPGC ++ TT IDCRIKTLKRTFQAI+EM+GP CSGFGWNDE KCI+A+KELFDNWSHP AKGLLNK FPYYDEL+YVFG+DRA G+ AE FA+V 
Subjt:  MTEKLPGCTIQGTTTIDCRIKTLKRTFQAISEMRGPTCSGFGWNDEVKCIIAKKELFDNWSHPTAKGLLNKPFPYYDELSYVFGKDRAIGQHAEMFANVC

Query:  SNVP-GGFEPF-VGDDVSNMDIPCMYSQ
        SN P GG++ F +GD   N D P +YSQ
Subjt:  SNVP-GGFEPF-VGDDVSNMDIPCMYSQ

KAA0047166.1 retrotransposon protein [Cucumis melo var. makuwa]6.5e-4771.32Show/hide
Query:  MTEKLPGCTIQGTTTIDCRIKTLKRTFQAISEMRGPTCSGFGWNDEVKCIIAKKELFDNW--SHPTAKGLLNKPFPYYDELSYVFGKDRAIGQHAEMFAN
        M EKLPGC ++ TT IDCRIKTLKRTFQAI+EMRGPTCSGFGWNDE KCIIA+KELFDNW  SHP AKGLLNKPFPYYDEL+YVF +DRA+G+ AE F +
Subjt:  MTEKLPGCTIQGTTTIDCRIKTLKRTFQAISEMRGPTCSGFGWNDEVKCIIAKKELFDNW--SHPTAKGLLNKPFPYYDELSYVFGKDRAIGQHAEMFAN

Query:  VCSNVPGGFEPF-VGDDVSNMDIPCMYSQ
        V SN PGG++ F +GD   N + P +Y+Q
Subjt:  VCSNVPGGFEPF-VGDDVSNMDIPCMYSQ

KAA0066208.1 retrotransposon protein [Cucumis melo var. makuwa]1.1e-4673.08Show/hide
Query:  MTEKLPGCTIQGTTTIDCRIKTLKRTFQAISEMRGPTCSGFGWNDEVKCIIAKKELFDNW--SHPTAKGLLNKPFPYYDELSYVFGKDRAIGQHAEMFAN
        M EKLPGC ++ TT IDCRIKTLKRTFQAI+EMRGP CSGFGWNDE KCIIA+KELFDNW  SHP AKGLLNKPFPYYDEL+YVFG+DRA G+ AE FA+
Subjt:  MTEKLPGCTIQGTTTIDCRIKTLKRTFQAISEMRGPTCSGFGWNDEVKCIIAKKELFDNW--SHPTAKGLLNKPFPYYDELSYVFGKDRAIGQHAEMFAN

Query:  VCSNVP-GGFEPF-VGDDVSNMDIPCMYSQ
        V SN P GG++ F +GD   N D P +YSQ
Subjt:  VCSNVP-GGFEPF-VGDDVSNMDIPCMYSQ

TYJ96194.1 retrotransposon protein [Cucumis melo var. makuwa]1.4e-4672.31Show/hide
Query:  MTEKLPGCTIQGTTTIDCRIKTLKRTFQAISEMRGPTCSGFGWNDEVKCIIAKKELFDNW--SHPTAKGLLNKPFPYYDELSYVFGKDRAIGQHAEMFAN
        M EKLPGC ++ TT IDCRIKTLKRTFQAI+EMRGP CSGFGWNDE KCI+A+KELFDNW  SHP AKGLLNKPFPYYDEL+YVFG+DRA G+ AE FA+
Subjt:  MTEKLPGCTIQGTTTIDCRIKTLKRTFQAISEMRGPTCSGFGWNDEVKCIIAKKELFDNW--SHPTAKGLLNKPFPYYDELSYVFGKDRAIGQHAEMFAN

Query:  VCSNVP-GGFEPF-VGDDVSNMDIPCMYSQ
        V SN P GG++ F +GD   N D P +YSQ
Subjt:  VCSNVP-GGFEPF-VGDDVSNMDIPCMYSQ

XP_031744343.1 uncharacterized protein LOC116404989 [Cucumis sativus]4.9e-4770.08Show/hide
Query:  MTEKLPGCTIQGTTTIDCRIKTLKRTFQAISEMRGPTCSGFGWNDEVKCIIAKKELFDNW--SHPTAKGLLNKPFPYYDELSYVFGKDRAIGQHAEMFAN
        M  KLPGC +  TT IDCRIKTLKR++Q I+EMRGP+C GFGWND+VKCI+A+KELFDNW  SHP AKGLLNK FPYYDEL+YVFGKDRA+G HAE FA+
Subjt:  MTEKLPGCTIQGTTTIDCRIKTLKRTFQAISEMRGPTCSGFGWNDEVKCIIAKKELFDNW--SHPTAKGLLNKPFPYYDELSYVFGKDRAIGQHAEMFAN

Query:  VCSNVPGGFEPFVGDDVSNMDIPCMYS
        V SNVP GFE F   D+++M+ P M S
Subjt:  VCSNVPGGFEPFVGDDVSNMDIPCMYS

TrEMBL top hitse value%identityAlignment
A0A5A7SS54 Retrotransposon protein5.3e-4771.88Show/hide
Query:  MTEKLPGCTIQGTTTIDCRIKTLKRTFQAISEMRGPTCSGFGWNDEVKCIIAKKELFDNWSHPTAKGLLNKPFPYYDELSYVFGKDRAIGQHAEMFANVC
        M EKLPGC ++ TT IDCRIKTLKRTFQAI+EM+GP CSGFGWNDE KCI+A+KELFDNWSHP AKGLLNK FPYYDEL+YVFG+DRA G+ AE FA+V 
Subjt:  MTEKLPGCTIQGTTTIDCRIKTLKRTFQAISEMRGPTCSGFGWNDEVKCIIAKKELFDNWSHPTAKGLLNKPFPYYDELSYVFGKDRAIGQHAEMFANVC

Query:  SNVP-GGFEPF-VGDDVSNMDIPCMYSQ
        SN P GG++ F +GD   N D P +YSQ
Subjt:  SNVP-GGFEPF-VGDDVSNMDIPCMYSQ

A0A5A7TRV1 Retrotransposon protein7.0e-4772.31Show/hide
Query:  MTEKLPGCTIQGTTTIDCRIKTLKRTFQAISEMRGPTCSGFGWNDEVKCIIAKKELFDNW--SHPTAKGLLNKPFPYYDELSYVFGKDRAIGQHAEMFAN
        M EKLPGC ++ TT IDCRIKTLKRTFQAI+EMRGP CSGFGWNDE KCI+A+KELFDNW  SHP AKGLLNKPFPYYDEL+YVFG+DRA G+ AE FA+
Subjt:  MTEKLPGCTIQGTTTIDCRIKTLKRTFQAISEMRGPTCSGFGWNDEVKCIIAKKELFDNW--SHPTAKGLLNKPFPYYDELSYVFGKDRAIGQHAEMFAN

Query:  VCSNVP-GGFEPF-VGDDVSNMDIPCMYSQ
        V SN P GG++ F +GD   N D P +YSQ
Subjt:  VCSNVP-GGFEPF-VGDDVSNMDIPCMYSQ

A0A5A7TYW0 Retrotransposon protein3.1e-4771.32Show/hide
Query:  MTEKLPGCTIQGTTTIDCRIKTLKRTFQAISEMRGPTCSGFGWNDEVKCIIAKKELFDNW--SHPTAKGLLNKPFPYYDELSYVFGKDRAIGQHAEMFAN
        M EKLPGC ++ TT IDCRIKTLKRTFQAI+EMRGPTCSGFGWNDE KCIIA+KELFDNW  SHP AKGLLNKPFPYYDEL+YVF +DRA+G+ AE F +
Subjt:  MTEKLPGCTIQGTTTIDCRIKTLKRTFQAISEMRGPTCSGFGWNDEVKCIIAKKELFDNW--SHPTAKGLLNKPFPYYDELSYVFGKDRAIGQHAEMFAN

Query:  VCSNVPGGFEPF-VGDDVSNMDIPCMYSQ
        V SN PGG++ F +GD   N + P +Y+Q
Subjt:  VCSNVPGGFEPF-VGDDVSNMDIPCMYSQ

A0A5A7VES2 Retrotransposon protein5.3e-4773.08Show/hide
Query:  MTEKLPGCTIQGTTTIDCRIKTLKRTFQAISEMRGPTCSGFGWNDEVKCIIAKKELFDNW--SHPTAKGLLNKPFPYYDELSYVFGKDRAIGQHAEMFAN
        M EKLPGC ++ TT IDCRIKTLKRTFQAI+EMRGP CSGFGWNDE KCIIA+KELFDNW  SHP AKGLLNKPFPYYDEL+YVFG+DRA G+ AE FA+
Subjt:  MTEKLPGCTIQGTTTIDCRIKTLKRTFQAISEMRGPTCSGFGWNDEVKCIIAKKELFDNW--SHPTAKGLLNKPFPYYDELSYVFGKDRAIGQHAEMFAN

Query:  VCSNVP-GGFEPF-VGDDVSNMDIPCMYSQ
        V SN P GG++ F +GD   N D P +YSQ
Subjt:  VCSNVP-GGFEPF-VGDDVSNMDIPCMYSQ

A0A5D3CWL2 Retrotransposon protein7.0e-4772.31Show/hide
Query:  MTEKLPGCTIQGTTTIDCRIKTLKRTFQAISEMRGPTCSGFGWNDEVKCIIAKKELFDNW--SHPTAKGLLNKPFPYYDELSYVFGKDRAIGQHAEMFAN
        M EKLPGC ++ TT IDCRIKTLKRTFQAI+EMRGP CSGFGWNDE KCI+A+KELFDNW  SHP AKGLLNKPFPYYDEL+YVFG+DRA G+ AE FA+
Subjt:  MTEKLPGCTIQGTTTIDCRIKTLKRTFQAISEMRGPTCSGFGWNDEVKCIIAKKELFDNW--SHPTAKGLLNKPFPYYDELSYVFGKDRAIGQHAEMFAN

Query:  VCSNVP-GGFEPF-VGDDVSNMDIPCMYSQ
        V SN P GG++ F +GD   N D P +YSQ
Subjt:  VCSNVP-GGFEPF-VGDDVSNMDIPCMYSQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAGAAAAGCTCCCAGGGTGTACCATACAGGGGACTACTACTATTGACTGTCGGATCAAGACACTTAAGAGAACCTTTCAAGCCATATCGGAGATGCGGGGCCCTAC
CTGTAGTGGATTCGGTTGGAATGACGAGGTGAAATGCATAATTGCGAAAAAAGAGCTATTTGACAATTGGAGTCACCCCACAGCAAAGGGTCTTCTGAACAAGCCATTTC
CATACTATGACGAACTGTCATATGTCTTCGGGAAAGACCGCGCTATCGGACAACACGCGGAGATGTTCGCAAATGTCTGTTCCAATGTGCCAGGTGGTTTTGAGCCATTT
GTAGGTGACGATGTTTCGAATATGGACATCCCATGCATGTACAGCCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGACAGAAAAGCTCCCAGGGTGTACCATACAGGGGACTACTACTATTGACTGTCGGATCAAGACACTTAAGAGAACCTTTCAAGCCATATCGGAGATGCGGGGCCCTAC
CTGTAGTGGATTCGGTTGGAATGACGAGGTGAAATGCATAATTGCGAAAAAAGAGCTATTTGACAATTGGAGTCACCCCACAGCAAAGGGTCTTCTGAACAAGCCATTTC
CATACTATGACGAACTGTCATATGTCTTCGGGAAAGACCGCGCTATCGGACAACACGCGGAGATGTTCGCAAATGTCTGTTCCAATGTGCCAGGTGGTTTTGAGCCATTT
GTAGGTGACGATGTTTCGAATATGGACATCCCATGCATGTACAGCCAATGA
Protein sequenceShow/hide protein sequence
MTEKLPGCTIQGTTTIDCRIKTLKRTFQAISEMRGPTCSGFGWNDEVKCIIAKKELFDNWSHPTAKGLLNKPFPYYDELSYVFGKDRAIGQHAEMFANVCSNVPGGFEPF
VGDDVSNMDIPCMYSQ