CuGenDBv2

Gene ID	PI0025652
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Gag/pol protein
Genome location	chr02:20179645..20180382
RNA-Seq Expression	PI0025652
Synteny	PI0025652
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008234 - cysteine-type peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

6.4e-75

72.86

Show/hide

Query:  ILVIDDLRFVLMEECPSSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNTHIKEDQSV
        +L+IDDLRFVL+EECP  P  NA++TVR+ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ+S QI+H+A+KY+YN  + E  SV
Subjt:  ILVIDDLRFVLMEECPSSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNTHIKEDQSV

Query:  REHVLDMMVQFNVAETNGTVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTILNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPS
        REHVL+MMV FNVAE NG VIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TT+LNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PS
Subjt:  REHVLDMMVQFNVAETNGTVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTILNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPS

Query:  SYGTKRRRGK
        S G K+ + K
Subjt:  SYGTKRRRGK

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]

6.4e-75

72.86

Show/hide

Query:  ILVIDDLRFVLMEECPSSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNTHIKEDQSV
        +L+IDDLRFVL+EECP  P  NA++TVR+ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ+S QI+H+A+KY+YN  + E  SV
Subjt:  ILVIDDLRFVLMEECPSSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNTHIKEDQSV

Query:  REHVLDMMVQFNVAETNGTVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTILNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPS
        REHVL+MMV FNVAE NG VIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TT+LNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PS
Subjt:  REHVLDMMVQFNVAETNGTVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTILNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPS

Query:  SYGTKRRRGK
        S G K+ + K
Subjt:  SYGTKRRRGK

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

6.4e-75

72.86

Show/hide

Query:  ILVIDDLRFVLMEECPSSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNTHIKEDQSV
        +L+IDDLRFVL+EECP  P  NA++TVR+ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ+S QI+H+A+KY+YN  + E  SV
Subjt:  ILVIDDLRFVLMEECPSSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNTHIKEDQSV

Query:  REHVLDMMVQFNVAETNGTVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTILNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPS
        REHVL+MMV FNVAE NG VIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TT+LNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PS
Subjt:  REHVLDMMVQFNVAETNGTVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTILNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPS

Query:  SYGTKRRRGK
        S G K+ + K
Subjt:  SYGTKRRRGK

KAA0061339.1 gag/pol protein [Cucumis melo var. makuwa]

6.4e-75

72.86

Show/hide

Query:  ILVIDDLRFVLMEECPSSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNTHIKEDQSV
        +L+IDDLRFVL+EECP  P  NA+QTVR+ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ+S QI+H+A+KY+YN  + E  SV
Subjt:  ILVIDDLRFVLMEECPSSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNTHIKEDQSV

Query:  REHVLDMMVQFNVAETNGTVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTILNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPS
        REHVL++MV FNVAE NG VIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TT+LNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PS
Subjt:  REHVLDMMVQFNVAETNGTVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTILNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPS

Query:  SYGTKRRRGK
        S G K+ + K
Subjt:  SYGTKRRRGK

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

6.4e-75

72.86

Show/hide

Query:  ILVIDDLRFVLMEECPSSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNTHIKEDQSV
        +L+IDDLRFVL+EECP  P  NA++TVR+ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ+S QI+H+A+KY+YN  + E  SV
Subjt:  ILVIDDLRFVLMEECPSSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNTHIKEDQSV

Query:  REHVLDMMVQFNVAETNGTVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTILNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPS
        REHVL+MMV FNVAE NG VIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TT+LNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PS
Subjt:  REHVLDMMVQFNVAETNGTVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTILNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPS

Query:  SYGTKRRRGK
        S G K+ + K
Subjt:  SYGTKRRRGK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

3.1e-75

72.86

Show/hide

Query:  ILVIDDLRFVLMEECPSSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNTHIKEDQSV
        +L+IDDLRFVL+EECP  P  NA++TVR+ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ+S QI+H+A+KY+YN  + E  SV
Subjt:  ILVIDDLRFVLMEECPSSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNTHIKEDQSV

Query:  REHVLDMMVQFNVAETNGTVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTILNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPS
        REHVL+MMV FNVAE NG VIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TT+LNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PS
Subjt:  REHVLDMMVQFNVAETNGTVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTILNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPS

Query:  SYGTKRRRGK
        S G K+ + K
Subjt:  SYGTKRRRGK

A0A5A7TU93 Gag/pol protein

3.1e-75

72.86

Show/hide

Query:  ILVIDDLRFVLMEECPSSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNTHIKEDQSV
        +L+IDDLRFVL+EECP  P  NA++TVR+ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ+S QI+H+A+KY+YN  + E  SV
Subjt:  ILVIDDLRFVLMEECPSSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNTHIKEDQSV

Query:  REHVLDMMVQFNVAETNGTVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTILNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPS
        REHVL+MMV FNVAE NG VIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TT+LNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PS
Subjt:  REHVLDMMVQFNVAETNGTVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTILNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPS

Query:  SYGTKRRRGK
        S G K+ + K
Subjt:  SYGTKRRRGK

A0A5A7TWB9 Gag/pol protein

3.1e-75

72.86

Show/hide

Query:  ILVIDDLRFVLMEECPSSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNTHIKEDQSV
        +L+IDDLRFVL+EECP  P  NA++TVR+ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ+S QI+H+A+KY+YN  + E  SV
Subjt:  ILVIDDLRFVLMEECPSSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNTHIKEDQSV

Query:  REHVLDMMVQFNVAETNGTVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTILNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPS
        REHVL+MMV FNVAE NG VIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TT+LNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PS
Subjt:  REHVLDMMVQFNVAETNGTVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTILNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPS

Query:  SYGTKRRRGK
        S G K+ + K
Subjt:  SYGTKRRRGK

A0A5A7V6N0 Gag/pol protein

3.1e-75

72.86

Show/hide

Query:  ILVIDDLRFVLMEECPSSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNTHIKEDQSV
        +L+IDDLRFVL+EECP  P  NA+QTVR+ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ+S QI+H+A+KY+YN  + E  SV
Subjt:  ILVIDDLRFVLMEECPSSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNTHIKEDQSV

Query:  REHVLDMMVQFNVAETNGTVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTILNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPS
        REHVL++MV FNVAE NG VIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TT+LNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PS
Subjt:  REHVLDMMVQFNVAETNGTVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTILNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPS

Query:  SYGTKRRRGK
        S G K+ + K
Subjt:  SYGTKRRRGK

A0A5D3CPJ6 Gag/pol protein

3.1e-75

72.86

Show/hide

Query:  ILVIDDLRFVLMEECPSSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNTHIKEDQSV
        +L+IDDLRFVL+EECP  P  NA++TVR+ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ+S QI+H+A+KY+YN  + E  SV
Subjt:  ILVIDDLRFVLMEECPSSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNTHIKEDQSV

Query:  REHVLDMMVQFNVAETNGTVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTILNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPS
        REHVL+MMV FNVAE NG VIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TT+LNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PS
Subjt:  REHVLDMMVQFNVAETNGTVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTILNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPS

Query:  SYGTKRRRGK
        S G K+ + K
Subjt:  SYGTKRRRGK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

Show/hide CDS sequence

ATGATTCTTGTAATCGATGATCTACGCTTCGTCTTAATGGAGGAATGTCCTTCTTCCCCTGTTCGAAATGCATCCCAGACCGTTAGGGATGCATATGACCGCTGGACAAA
GGCCAATGAAAAGGCCCGAGTCTACATCTTGGCCAGTATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATTATGGACTCCCTCCAGGAGA
TGTTTGGACAATCGTCCATTCAAATCCGGCACGAGGCTATTAAATACGTTTATAATACCCATATAAAGGAAGACCAATCTGTTAGAGAACATGTTCTCGACATGATGGTC
CAATTCAACGTGGCAGAAACAAACGGGACGGTCATTGACGAGCAAAGTCAGGTATCCTTTATCTTAGAATCTCTTCCGAAGAGTTTCCTTCAATTTCGTAGCAATGCGGT
TATGAACAAGATAGAGTATACCATGACTACCATCCTTAACGAGTTGCAGACTTTTCAGTCTCTTATGAAAAATAAGGGACAAAAGGAAGGAGAGGCAAATGTTGCCCATT
CCAAGAGGTTTCAGAAGGGTTCATCCTCTGGAACCAAGTCTGCACCTTCATCTTATGGGACAAAAAGAAGGAGAGGCAAGTGGGAGTTTGTTGGGTTTTATGTCCTAAAA
CTCGTGGATAGTAAATGTAATCCATTGACTGTGATTAATAAAAGTGTTATTATTATAATTTCAATAAAGCGTTATTGA

mRNA sequence

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Protein sequence

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MILVIDDLRFVLMEECPSSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNTHIKEDQSVREHVLDMMV
QFNVAETNGTVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTILNELQTFQSLMKNKGQKEGEANVAHSKRFQKGSSSGTKSAPSSYGTKRRRGKWEFVGFYVLK
LVDSKCNPLTVINKSVIIIISIKRY

PI0025652 (gene) of Melon (PI 482460) v1 genome