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PI0025687 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0025687
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr10:5893453..5895881
RNA-Seq ExpressionPI0025687
SyntenyPI0025687
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]1.9e-4773.55Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPTQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP+GNTYN+GWRDNPNLRWGND Q+ TQA  +S+NQG+NLED++KALATNT+SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPTQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKQEGKGKLPAQPDHAN
        T AISK +GKGKLPAQPD+AN
Subjt:  TNAISKQEGKGKLPAQPDHAN

KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.3e-4773.55Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPTQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDPHGNTYN+GWRDNPNLRWGND Q+ TQA S+S+NQG+NLED++KALATNT+SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPTQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKQEGKGKLPAQPDHAN
        T AISK +GKGKL AQ ++AN
Subjt:  TNAISKQEGKGKLPAQPDHAN

KAA0051761.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.1e-4773.55Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPTQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPHGNTYN+GWRDNPNLRWGND Q+ TQA  +S+NQG+NLED++KALATNT+SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPTQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKQEGKGKLPAQPDHAN
        T  ISK +GKGKL AQPDHAN
Subjt:  TNAISKQEGKGKLPAQPDHAN

TYK10613.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.9e-4874.38Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPTQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G   KV KCGVCGL+GHPNDKCP+++E+ N++R+YDPHGNTYN GWRD PNLRWGND Q  TQA S+S+NQG+NLED++KAL TNT+SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPTQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKQEGKGKLPAQPDHAN
        T AISK +GKGKLPAQPDHAN
Subjt:  TNAISKQEGKGKLPAQPDHAN

XP_016902871.1 PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo]1.1e-4773.55Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPTQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPHGNTYN+GWRDNPNLRWGND Q+ TQA  +S+NQG+NLED++KALATNT+SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPTQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKQEGKGKLPAQPDHAN
        T  ISK +GKGKL AQPDHAN
Subjt:  TNAISKQEGKGKLPAQPDHAN

TrEMBL top hitse value%identityAlignment
A0A1S4E3R2 uncharacterized protein LOC1079919105.5e-4873.55Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPTQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPHGNTYN+GWRDNPNLRWGND Q+ TQA  +S+NQG+NLED++KALATNT+SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPTQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKQEGKGKLPAQPDHAN
        T  ISK +GKGKL AQPDHAN
Subjt:  TNAISKQEGKGKLPAQPDHAN

A0A5D3CFE7 Retrotransposon gag protein1.9e-4874.38Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPTQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G   KV KCGVCGL+GHPNDKCP+++E+ N++R+YDPHGNTYN GWRD PNLRWGND Q  TQA S+S+NQG+NLED++KAL TNT+SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPTQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKQEGKGKLPAQPDHAN
        T AISK +GKGKLPAQPDHAN
Subjt:  TNAISKQEGKGKLPAQPDHAN

A0A5D3CRR8 Retrotransposon gag protein1.6e-4773.55Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPTQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDPHGNTYN+GWRDNPNLRWGND Q+ TQA S+S+NQG+NLED++KALATNT+SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPTQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKQEGKGKLPAQPDHAN
        T AISK +GKGKL AQ ++AN
Subjt:  TNAISKQEGKGKLPAQPDHAN

A0A5D3DCG3 Retrotransposon gag protein5.5e-4873.55Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPTQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPHGNTYN+GWRDNPNLRWGND Q+ TQA  +S+NQG+NLED++KALATNT+SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPTQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKQEGKGKLPAQPDHAN
        T  ISK +GKGKL AQPDHAN
Subjt:  TNAISKQEGKGKLPAQPDHAN

E5GBZ4 Retrotransposon gag protein9.4e-4873.55Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPTQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP+GNTYN+GWRDNPNLRWGND Q+ TQA  +S+NQG+NLED++KALATNT+SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPTQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKQEGKGKLPAQPDHAN
        T AISK +GKGKLPAQPD+AN
Subjt:  TNAISKQEGKGKLPAQPDHAN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCCGTTGCCGGGGAGCGACGGTGGAAATGTGAAAGTTGCAAAATGTGGAGTTTGTGGTCTCATTGGACATCCTAATGACAAGTGTCCCGACCTTGTGGAAGAGGC
AAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTATAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAATGACGCCCAACGACCCACACAAGCGACTT
CATCCTCAAATAATCAAGGTAGTAATTTGGAAGATTTGGTAAAAGCTCTTGCTACCAATACAATTTCTTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTGACCAAT
GCAATAAGCAAACAAGAAGGTAAAGGTAAGCTTCCAGCTCAGCCCGATCACGCAAATAAATATCGATTCACTCCTCCTATCAATATTGAACCCATGGAAATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGCCGTTGCCGGGGAGCGACGGTGGAAATGTGAAAGTTGCAAAATGTGGAGTTTGTGGTCTCATTGGACATCCTAATGACAAGTGTCCCGACCTTGTGGAAGAGGC
AAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTATAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAATGACGCCCAACGACCCACACAAGCGACTT
CATCCTCAAATAATCAAGGTAGTAATTTGGAAGATTTGGTAAAAGCTCTTGCTACCAATACAATTTCTTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTGACCAAT
GCAATAAGCAAACAAGAAGGTAAAGGTAAGCTTCCAGCTCAGCCCGATCACGCAAATAAATATCGATTCACTCCTCCTATCAATATTGAACCCATGGAAATGTGA
Protein sequenceShow/hide protein sequence
MAPLPGSDGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPTQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTN
AISKQEGKGKLPAQPDHANKYRFTPPINIEPMEM